RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 ARID3BQ8IVW6 561 aaPredicted RBP15.61■□□□□ 0.09
CUX1-214ENST00000550008 MYH13Q9UKX3 1938 aa15.61■□□□□ 0.09
CUX1-214ENST00000550008 RPS6KL1Q9Y6S9 549 aa15.61■□□□□ 0.09
CUX1-214ENST00000550008 C3orf70A6NLC5 250 aaPredicted RBP15.6■□□□□ 0.09
CUX1-214ENST00000550008 GRIN3BO60391 1043 aa15.6■□□□□ 0.09
CUX1-214ENST00000550008 AMPD1P23109 780 aa15.6■□□□□ 0.09
CUX1-214ENST00000550008 MMRN1Q13201 1228 aa15.6■□□□□ 0.09
CUX1-214ENST00000550008 NEUROG2Q9H2A3 272 aa15.6■□□□□ 0.09
CUX1-214ENST00000550008 RNPEPQ9H4A4 650 aa15.6■□□□□ 0.09
CUX1-214ENST00000550008 R3HDM2Q9Y2K5 976 aaKnown RBP15.6■□□□□ 0.09
CUX1-214ENST00000550008 A0A0B4J269 797 aa15.6■□□□□ 0.09
CUX1-214ENST00000550008 CYP1A2P05177 515 aa15.6■□□□□ 0.09
CUX1-214ENST00000550008 CHKAP35790 457 aa15.6■□□□□ 0.09
CUX1-214ENST00000550008 ELK3P41970 407 aa15.6■□□□□ 0.09
CUX1-214ENST00000550008 ACADSBP45954 432 aa15.6■□□□□ 0.09
CUX1-214ENST00000550008 N4BP2L2Q92802 583 aaPredicted RBP15.6■□□□□ 0.09
CUX1-214ENST00000550008 MFSD14AQ96MC6 490 aa15.6■□□□□ 0.09
CUX1-214ENST00000550008 FOXR2Q6PJQ5 311 aa15.6■□□□□ 0.09
CUX1-214ENST00000550008 GTF3C2Q8WUA4 911 aaPredicted RBP15.6■□□□□ 0.09
CUX1-214ENST00000550008 RMDN1Q96DB5 314 aa15.6■□□□□ 0.09
CUX1-214ENST00000550008 CELF6Q96J87 481 aaKnown RBP15.6■□□□□ 0.09
CUX1-214ENST00000550008 LOC100653049A0A140TA62 436 aa15.59■□□□□ 0.09
CUX1-214ENST00000550008 CES2O00748 559 aa15.59■□□□□ 0.09
CUX1-214ENST00000550008 KRT34O76011 436 aa15.59■□□□□ 0.09
CUX1-214ENST00000550008 MMP14P50281 582 aa15.59■□□□□ 0.09
CUX1-214ENST00000550008 BCAT1P54687 386 aa15.59■□□□□ 0.09
CUX1-214ENST00000550008 PDK1Q15118 436 aa15.59■□□□□ 0.09
CUX1-214ENST00000550008 GRAMD1BQ3KR37 738 aa15.59■□□□□ 0.09
CUX1-214ENST00000550008 CES3Q6UWW8 571 aa15.59■□□□□ 0.09
CUX1-214ENST00000550008 PPP1R3FQ6ZSY5 799 aaPredicted RBP15.59■□□□□ 0.09
CUX1-214ENST00000550008 ATPAF2Q8N5M1 289 aa15.59■□□□□ 0.09
CUX1-214ENST00000550008 C3orf20Q8ND61 904 aa15.59■□□□□ 0.09
CUX1-214ENST00000550008 TFB1MQ8WVM0 346 aaKnown RBP15.59■□□□□ 0.09
CUX1-214ENST00000550008 STAMBPL1Q96FJ0 436 aa15.59■□□□□ 0.09
CUX1-214ENST00000550008 GAD1Q99259 594 aa15.59■□□□□ 0.09
CUX1-214ENST00000550008 FOXP3Q9BZS1 431 aa15.59■□□□□ 0.09
CUX1-214ENST00000550008 CYP3A43Q9HB55 503 aa15.59■□□□□ 0.09
CUX1-214ENST00000550008 C20orf96Q9NUD7 363 aaPredicted RBP15.59■□□□□ 0.09
CUX1-214ENST00000550008 FAM8A1Q9UBU6 413 aa15.59■□□□□ 0.09
CUX1-214ENST00000550008 ANGPTL3Q9Y5C1 460 aa15.59■□□□□ 0.09
CUX1-214ENST00000550008 NCANO14594 1321 aa15.59■□□□□ 0.09
CUX1-214ENST00000550008 NFASCO94856 1347 aa15.59■□□□□ 0.09
CUX1-214ENST00000550008 STX1BP61266 288 aa15.59■□□□□ 0.09
CUX1-214ENST00000550008 DBN1Q16643 649 aa15.59■□□□□ 0.09
CUX1-214ENST00000550008 C1orf146Q5VVC0 180 aa15.59■□□□□ 0.09
CUX1-214ENST00000550008 CXCL17Q6UXB2 119 aa15.59■□□□□ 0.09
CUX1-214ENST00000550008 ALKBH8Q96BT7 664 aaKnown RBP15.59■□□□□ 0.09
CUX1-214ENST00000550008 ASB7Q9H672 318 aa15.59■□□□□ 0.09
CUX1-214ENST00000550008 WDCPQ9H6R7 721 aa15.59■□□□□ 0.09
CUX1-214ENST00000550008 SUDS3Q9H7L9 328 aaPredicted RBP15.59■□□□□ 0.09
CUX1-214ENST00000550008 NUP98P52948 1817 aa15.59■□□□□ 0.09
CUX1-214ENST00000550008 FOXO6A8MYZ6 492 aa15.59■□□□□ 0.09
CUX1-214ENST00000550008 CYP2F1P24903 491 aa15.59■□□□□ 0.09
CUX1-214ENST00000550008 TARSP26639 723 aaKnown RBP15.59■□□□□ 0.09
CUX1-214ENST00000550008 TKTL1P51854 596 aa15.59■□□□□ 0.09
CUX1-214ENST00000550008 STX3Q13277 289 aa15.59■□□□□ 0.09
CUX1-214ENST00000550008 RBBP5Q15291 538 aaKnown RBP15.59■□□□□ 0.09
CUX1-214ENST00000550008 PKN2Q16513 984 aaKnown RBP15.59■□□□□ 0.09
CUX1-214ENST00000550008 SLC27A1Q6PCB7 646 aa15.59■□□□□ 0.09
CUX1-214ENST00000550008 FAM136AQ96C01 138 aa15.59■□□□□ 0.09
CUX1-214ENST00000550008 VCXQ9H320 206 aa15.59■□□□□ 0.09
CUX1-214ENST00000550008 TMEM134Q9H6X4 195 aa15.59■□□□□ 0.09
CUX1-214ENST00000550008 SLC38A7Q9NVC3 462 aa15.59■□□□□ 0.09
CUX1-214ENST00000550008 DMAC2Q9NW81 257 aa15.59■□□□□ 0.09
CUX1-214ENST00000550008 NOP53Q9NZM5 478 aaKnown RBP15.59■□□□□ 0.09
CUX1-214ENST00000550008 USH1CQ9Y6N9 552 aa15.59■□□□□ 0.09
CUX1-214ENST00000550008 USP12O75317 370 aa15.59■□□□□ 0.09
CUX1-214ENST00000550008 PDHA1P08559 390 aa15.59■□□□□ 0.09
CUX1-214ENST00000550008 ARF4P18085 180 aaPredicted RBP15.59■□□□□ 0.09
CUX1-214ENST00000550008 ATXN3P54252 364 aaPredicted RBP15.59■□□□□ 0.09
CUX1-214ENST00000550008 USP10Q14694 798 aaKnown RBP15.59■□□□□ 0.09
CUX1-214ENST00000550008 RAB44Q7Z6P3 723 aaPredicted RBP15.59■□□□□ 0.09
CUX1-214ENST00000550008 LRRC57Q8N9N7 239 aa15.59■□□□□ 0.09
CUX1-214ENST00000550008 JOSD2Q8TAC2 188 aa15.59■□□□□ 0.09
CUX1-214ENST00000550008 VCPIP1Q96JH7 1222 aa15.59■□□□□ 0.09
CUX1-214ENST00000550008 FAM129AQ9BZQ8 928 aa15.59■□□□□ 0.09
CUX1-214ENST00000550008 UNKQ9C0B0 810 aaKnown RBP15.59■□□□□ 0.09
CUX1-214ENST00000550008 DDX43Q9NXZ2 648 aaKnown RBP15.59■□□□□ 0.09
CUX1-214ENST00000550008 ATRNL1Q5VV63 1379 aa15.58■□□□□ 0.09
CUX1-214ENST00000550008 ZNF536O15090 1300 aa15.58■□□□□ 0.09
CUX1-214ENST00000550008 IGF2BP3O00425 579 aaKnown RBP eCLIP15.58■□□□□ 0.09
CUX1-214ENST00000550008 PFDN6O15212 129 aa15.58■□□□□ 0.09
CUX1-214ENST00000550008 ASS1P00966 412 aaKnown RBP15.58■□□□□ 0.09
CUX1-214ENST00000550008 THP07101 528 aa15.58■□□□□ 0.09
CUX1-214ENST00000550008 PAMP19021 973 aa15.58■□□□□ 0.09
CUX1-214ENST00000550008 MORF4L2Q15014 288 aa15.58■□□□□ 0.09
CUX1-214ENST00000550008 CHI3L2Q15782 390 aa15.58■□□□□ 0.09
CUX1-214ENST00000550008 KLC3Q6P597 504 aa15.58■□□□□ 0.09
CUX1-214ENST00000550008 NUF2Q9BZD4 464 aa15.58■□□□□ 0.09
CUX1-214ENST00000550008 ARHGAP28Q9P2N2 729 aa15.58■□□□□ 0.09
CUX1-214ENST00000550008 DDX20Q9UHI6 824 aaKnown RBP15.58■□□□□ 0.09
CUX1-214ENST00000550008 PHTF1Q9UMS5 762 aa15.58■□□□□ 0.09
CUX1-214ENST00000550008 TRPM3Q9HCF6 1732 aaPredicted RBP15.58■□□□□ 0.09
CUX1-214ENST00000550008 DNALI1O14645 258 aaPredicted RBP15.58■□□□□ 0.08
CUX1-214ENST00000550008 DHX15O43143 795 aaKnown RBP15.58■□□□□ 0.08
CUX1-214ENST00000550008 PGK1P00558 417 aa15.58■□□□□ 0.08
CUX1-214ENST00000550008 FECHP22830 423 aa15.58■□□□□ 0.08
CUX1-214ENST00000550008 EIF4BP23588 611 aaKnown RBP15.58■□□□□ 0.08
CUX1-214ENST00000550008 RGS2P41220 211 aa15.58■□□□□ 0.08
CUX1-214ENST00000550008 ZNF235Q14590 738 aa15.58■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms