RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 DPYSL3Q14195 570 aa18.85■□□□□ 0.61
VIM-209ENST00000544301 STILQ15468 1287 aa18.85■□□□□ 0.61
VIM-209ENST00000544301 DUSP28Q4G0W2 176 aa18.85■□□□□ 0.61
VIM-209ENST00000544301 EFHC2Q5JST6 749 aa18.85■□□□□ 0.61
VIM-209ENST00000544301 PPP1R26Q5T8A7 1209 aaPredicted RBP18.85■□□□□ 0.61
VIM-209ENST00000544301 DENND1AQ8TEH3 1009 aa18.85■□□□□ 0.61
VIM-209ENST00000544301 MS4A4AQ96JQ5 239 aa18.85■□□□□ 0.61
VIM-209ENST00000544301 MRPL45Q9BRJ2 306 aaKnown RBP18.85■□□□□ 0.61
VIM-209ENST00000544301 WDR83Q9BRX9 315 aaKnown RBP18.85■□□□□ 0.61
VIM-209ENST00000544301 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP18.85■□□□□ 0.61
VIM-209ENST00000544301 RABGEF1Q9UJ41 708 aa18.85■□□□□ 0.61
VIM-209ENST00000544301 PPEF2O14830 753 aa18.84■□□□□ 0.61
VIM-209ENST00000544301 TMEM63AO94886 807 aa18.84■□□□□ 0.61
VIM-209ENST00000544301 SUN1O94901 812 aa18.84■□□□□ 0.61
VIM-209ENST00000544301 GSTA1P08263 222 aa18.84■□□□□ 0.61
VIM-209ENST00000544301 KRT15P19012 456 aa18.84■□□□□ 0.61
VIM-209ENST00000544301 TAC1P20366 129 aa18.84■□□□□ 0.61
VIM-209ENST00000544301 HOXA11P31270 313 aaPredicted RBP18.84■□□□□ 0.61
VIM-209ENST00000544301 NOMO1Q15155 1222 aa18.84■□□□□ 0.61
VIM-209ENST00000544301 ZKSCAN8Q15776 578 aaPredicted RBP18.84■□□□□ 0.61
VIM-209ENST00000544301 CCDC14Q49A88 953 aa18.84■□□□□ 0.61
VIM-209ENST00000544301 PKDCCQ504Y2 493 aa18.84■□□□□ 0.61
VIM-209ENST00000544301 PMF1Q6P1K2 205 aa18.84■□□□□ 0.61
VIM-209ENST00000544301 SPATA21Q7Z572 469 aa18.84■□□□□ 0.61
VIM-209ENST00000544301 MRRFQ96E11 262 aaKnown RBP18.84■□□□□ 0.61
VIM-209ENST00000544301 ZMAT2Q96NC0 199 aaKnown RBP18.84■□□□□ 0.61
VIM-209ENST00000544301 ADAMTS10Q9H324 1103 aa18.84■□□□□ 0.61
VIM-209ENST00000544301 KIF9Q9HAQ2 790 aa18.84■□□□□ 0.61
VIM-209ENST00000544301 PLEKHA5Q9HAU0 1116 aa18.84■□□□□ 0.61
VIM-209ENST00000544301 SETD4Q9NVD3 440 aa18.84■□□□□ 0.61
VIM-209ENST00000544301 HAUS2Q9NVX0 235 aa18.84■□□□□ 0.61
VIM-209ENST00000544301 SNTG2Q9NY99 539 aa18.84■□□□□ 0.61
VIM-209ENST00000544301 SENP1Q9P0U3 644 aa18.84■□□□□ 0.61
VIM-209ENST00000544301 PSMC3IPQ9P2W1 217 aaPredicted RBP18.84■□□□□ 0.61
VIM-209ENST00000544301 MORF4L1Q9UBU8 362 aa18.84■□□□□ 0.61
VIM-209ENST00000544301 XPO7Q9UIA9 1087 aaKnown RBP18.84■□□□□ 0.61
VIM-209ENST00000544301 SLC45A1Q9Y2W3 748 aa18.84■□□□□ 0.61
VIM-209ENST00000544301 DERAQ9Y315 318 aa18.84■□□□□ 0.61
VIM-209ENST00000544301 PRPSAP2O60256 369 aa18.83■□□□□ 0.61
VIM-209ENST00000544301 ASMTLO95671 621 aa18.83■□□□□ 0.61
VIM-209ENST00000544301 SSTR1P30872 391 aa18.83■□□□□ 0.61
VIM-209ENST00000544301 PHBP35232 272 aa18.83■□□□□ 0.61
VIM-209ENST00000544301 SLC18A1P54219 525 aa18.83■□□□□ 0.61
VIM-209ENST00000544301 NRLP54845 237 aa18.83■□□□□ 0.61
VIM-209ENST00000544301 ROR1Q01973 937 aa18.83■□□□□ 0.61
VIM-209ENST00000544301 XRCC4Q13426 336 aa18.83■□□□□ 0.61
VIM-209ENST00000544301 CDO1Q16878 200 aa18.83■□□□□ 0.61
VIM-209ENST00000544301 OLFML1Q6UWY5 402 aa18.83■□□□□ 0.61
VIM-209ENST00000544301 DPP9Q86TI2 863 aa18.83■□□□□ 0.61
VIM-209ENST00000544301 TTC30AQ86WT1 665 aa18.83■□□□□ 0.61
VIM-209ENST00000544301 SUGP1Q8IWZ8 645 aaKnown RBP18.83■□□□□ 0.61
VIM-209ENST00000544301 ATP11CQ8NB49 1132 aa18.83■□□□□ 0.61
VIM-209ENST00000544301 OR6J1Q8NGC5 347 aa18.83■□□□□ 0.61
VIM-209ENST00000544301 FBXO41Q8TF61 875 aa18.83■□□□□ 0.61
VIM-209ENST00000544301 SNX9Q9Y5X1 595 aa18.83■□□□□ 0.61
VIM-209ENST00000544301 SMAPO00193 183 aa18.83■□□□□ 0.6
VIM-209ENST00000544301 GEMIN4P57678 1058 aaKnown RBP18.83■□□□□ 0.6
VIM-209ENST00000544301 DGKDQ16760 1214 aa18.83■□□□□ 0.6
VIM-209ENST00000544301 FAM47CQ5HY64 1035 aa18.83■□□□□ 0.6
VIM-209ENST00000544301 CGB2Q6NT52 195 aa18.83■□□□□ 0.6
VIM-209ENST00000544301 DARS2Q6PI48 645 aaKnown RBP18.83■□□□□ 0.6
VIM-209ENST00000544301 ACOT1Q86TX2 421 aa18.83■□□□□ 0.6
VIM-209ENST00000544301 FBXO36Q8NEA4 188 aa18.83■□□□□ 0.6
VIM-209ENST00000544301 MAML3Q96JK9 1138 aa18.83■□□□□ 0.6
VIM-209ENST00000544301 SNX27Q96L92 541 aa18.83■□□□□ 0.6
VIM-209ENST00000544301 SMC6Q96SB8 1091 aa18.83■□□□□ 0.6
VIM-209ENST00000544301 PAIP2Q9BPZ3 127 aaKnown RBP18.83■□□□□ 0.6
VIM-209ENST00000544301 KLC4Q9NSK0 619 aa18.83■□□□□ 0.6
VIM-209ENST00000544301 PRKAG3Q9UGI9 489 aa18.83■□□□□ 0.6
VIM-209ENST00000544301 FETUBQ9UGM5 382 aa18.83■□□□□ 0.6
VIM-209ENST00000544301 SMG5Q9UPR3 1016 aaKnown RBP18.83■□□□□ 0.6
VIM-209ENST00000544301 NME7Q9Y5B8 376 aa18.83■□□□□ 0.6
VIM-209ENST00000544301 CCL15-CCL14A0A0B4J2E2 113 aa18.82■□□□□ 0.6
VIM-209ENST00000544301 DPYSL4O14531 572 aa18.82■□□□□ 0.6
VIM-209ENST00000544301 STIP1P31948 543 aaKnown RBP18.82■□□□□ 0.6
VIM-209ENST00000544301 GCLCP48506 637 aaPredicted RBP18.82■□□□□ 0.6
VIM-209ENST00000544301 TMEM62Q0P6H9 643 aa18.82■□□□□ 0.6
VIM-209ENST00000544301 TFDP2Q14188 446 aa18.82■□□□□ 0.6
VIM-209ENST00000544301 CCL15Q16663 113 aa18.82■□□□□ 0.6
VIM-209ENST00000544301 C3orf62Q6ZUJ4 267 aa18.82■□□□□ 0.6
VIM-209ENST00000544301 GPR142Q7Z601 462 aa18.82■□□□□ 0.6
VIM-209ENST00000544301 ZC3H18Q86VM9 953 aaKnown RBP18.82■□□□□ 0.6
VIM-209ENST00000544301 C4orf33Q8N1A6 199 aa18.82■□□□□ 0.6
VIM-209ENST00000544301 RNF157Q96PX1 679 aa18.82■□□□□ 0.6
VIM-209ENST00000544301 SLC4A5Q9BY07 1137 aa18.82■□□□□ 0.6
VIM-209ENST00000544301 EIF2AQ9BY44 585 aaKnown RBP18.82■□□□□ 0.6
VIM-209ENST00000544301 GINS2Q9Y248 185 aa18.82■□□□□ 0.6
VIM-209ENST00000544301 ARL2BPQ9Y2Y0 163 aa18.82■□□□□ 0.6
VIM-209ENST00000544301 TRIP11Q15643 1979 aa18.82■□□□□ 0.6
VIM-209ENST00000544301 SCN1AP35498 2009 aa18.82■□□□□ 0.6
VIM-209ENST00000544301 A0A1W2PPM1 405 aa18.82■□□□□ 0.6
VIM-209ENST00000544301 BASP1P80723 227 aaKnown RBP18.82■□□□□ 0.6
VIM-209ENST00000544301 ATP11AP98196 1134 aa18.82■□□□□ 0.6
VIM-209ENST00000544301 ACVR2BQ13705 512 aa18.82■□□□□ 0.6
VIM-209ENST00000544301 GRB14Q14449 540 aa18.82■□□□□ 0.6
VIM-209ENST00000544301 EFTUD2Q15029 972 aaKnown RBP eCLIP18.82■□□□□ 0.61e-6■■■■■ 65.9
VIM-209ENST00000544301 MTFR1Q15390 333 aa18.82■□□□□ 0.6
VIM-209ENST00000544301 ZBTB6Q15916 424 aa18.82■□□□□ 0.6
VIM-209ENST00000544301 BBS9Q3SYG4 887 aa18.82■□□□□ 0.6
VIM-209ENST00000544301 FAM133BQ5BKY9 247 aaKnown RBP18.82■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms