RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 POMCP01189 267 aa15.23■□□□□ 0.03
CLIP1-216ENST00000541410 SLCO1A2P46721 670 aa15.23■□□□□ 0.03
CLIP1-216ENST00000541410 OTUD4Q01804 1114 aaKnown RBP15.23■□□□□ 0.03
CLIP1-216ENST00000541410 ZC3H12AQ5D1E8 599 aaKnown RBP15.23■□□□□ 0.03
CLIP1-216ENST00000541410 HP1BP3Q5SSJ5 553 aaPredicted RBP15.23■□□□□ 0.03
CLIP1-216ENST00000541410 KIAA0319Q5VV43 1072 aa15.23■□□□□ 0.03
CLIP1-216ENST00000541410 NPNTQ6UXI9 565 aa15.23■□□□□ 0.03
CLIP1-216ENST00000541410 AGMOQ6ZNB7 445 aa15.23■□□□□ 0.03
CLIP1-216ENST00000541410 CYP4V2Q6ZWL3 525 aaPredicted RBP15.23■□□□□ 0.03
CLIP1-216ENST00000541410 POLNQ7Z5Q5 900 aa15.23■□□□□ 0.03
CLIP1-216ENST00000541410 UNC93AQ86WB7 457 aa15.23■□□□□ 0.03
CLIP1-216ENST00000541410 HASPINQ8TF76 798 aa15.23■□□□□ 0.03
CLIP1-216ENST00000541410 LRRN4Q8WUT4 740 aa15.23■□□□□ 0.03
CLIP1-216ENST00000541410 SLC4A5Q9BY07 1137 aa15.23■□□□□ 0.03
CLIP1-216ENST00000541410 ADAM33Q9BZ11 813 aa15.23■□□□□ 0.03
CLIP1-216ENST00000541410 GDAP2Q9NXN4 497 aa15.23■□□□□ 0.03
CLIP1-216ENST00000541410 ANAPC5Q9UJX4 755 aa15.23■□□□□ 0.03
CLIP1-216ENST00000541410 NOD1Q9Y239 953 aa15.23■□□□□ 0.03
CLIP1-216ENST00000541410 MKI67P46013 3256 aaKnown RBP15.23■□□□□ 0.03
CLIP1-216ENST00000541410 SGK1O00141 431 aa15.22■□□□□ 0.03
CLIP1-216ENST00000541410 PECAM1P16284 738 aaPredicted RBP15.22■□□□□ 0.03
CLIP1-216ENST00000541410 CDH6P55285 790 aa15.22■□□□□ 0.03
CLIP1-216ENST00000541410 SLC6A3Q01959 620 aa15.22■□□□□ 0.03
CLIP1-216ENST00000541410 NOGQ13253 232 aa15.22■□□□□ 0.03
CLIP1-216ENST00000541410 IZUMO3Q5VZ72 239 aa15.22■□□□□ 0.03
CLIP1-216ENST00000541410 DENND2CQ68D51 928 aa15.22■□□□□ 0.03
CLIP1-216ENST00000541410 FAM172AQ8WUF8 416 aa15.22■□□□□ 0.03
CLIP1-216ENST00000541410 CNPY3Q9BT09 278 aa15.22■□□□□ 0.03
CLIP1-216ENST00000541410 HOMER3Q9NSC5 361 aa15.22■□□□□ 0.03
CLIP1-216ENST00000541410 WHRNQ9P202 907 aa15.22■□□□□ 0.03
CLIP1-216ENST00000541410 INPP5FQ9Y2H2 1132 aa15.22■□□□□ 0.03
CLIP1-216ENST00000541410 ALDH1A1P00352 501 aa15.22■□□□□ 0.03
CLIP1-216ENST00000541410 PNPLA4P41247 253 aa15.22■□□□□ 0.03
CLIP1-216ENST00000541410 ARSEP51690 589 aa15.22■□□□□ 0.03
CLIP1-216ENST00000541410 GDF10P55107 478 aa15.22■□□□□ 0.03
CLIP1-216ENST00000541410 MGAT3Q09327 533 aa15.22■□□□□ 0.03
CLIP1-216ENST00000541410 STILQ15468 1287 aa15.22■□□□□ 0.03
CLIP1-216ENST00000541410 LRIG3Q6UXM1 1119 aa15.22■□□□□ 0.03
CLIP1-216ENST00000541410 TMEM110Q86TL2 294 aa15.22■□□□□ 0.03
CLIP1-216ENST00000541410 B3GALNT2Q8NCR0 500 aa15.22■□□□□ 0.03
CLIP1-216ENST00000541410 NOVA2Q9UNW9 492 aaKnown RBP15.22■□□□□ 0.03
CLIP1-216ENST00000541410 ZNF638Q14966 1978 aaKnown RBP15.21■□□□□ 0.03
CLIP1-216ENST00000541410 CAND2O75155 1236 aa15.21■□□□□ 0.03
CLIP1-216ENST00000541410 THP07101 528 aa15.21■□□□□ 0.03
CLIP1-216ENST00000541410 ITIH2P19823 946 aa15.21■□□□□ 0.03
CLIP1-216ENST00000541410 KLRC2P26717 231 aa15.21■□□□□ 0.03
CLIP1-216ENST00000541410 COPS2P61201 443 aa15.21■□□□□ 0.03
CLIP1-216ENST00000541410 BST2Q10589 180 aaKnown RBP15.21■□□□□ 0.03
CLIP1-216ENST00000541410 MTM1Q13496 603 aa15.21■□□□□ 0.03
CLIP1-216ENST00000541410 ITGA7Q13683 1181 aa15.21■□□□□ 0.03
CLIP1-216ENST00000541410 CA9Q16790 459 aa15.21■□□□□ 0.03
CLIP1-216ENST00000541410 CCSAPQ6IQ19 270 aaPredicted RBP15.21■□□□□ 0.03
CLIP1-216ENST00000541410 CRYBG2Q8N1P7 616 aa15.21■□□□□ 0.03
CLIP1-216ENST00000541410 ANKRD52Q8NB46 1076 aa15.21■□□□□ 0.03
CLIP1-216ENST00000541410 KLHDC9Q8NEP7 349 aa15.21■□□□□ 0.03
CLIP1-216ENST00000541410 CDC42EP4Q9H3Q1 356 aaKnown RBP15.21■□□□□ 0.03
CLIP1-216ENST00000541410 FEZ2Q9UHY8 353 aaPredicted RBP15.21■□□□□ 0.03
CLIP1-216ENST00000541410 RIPK2O43353 540 aa15.21■□□□□ 0.03
CLIP1-216ENST00000541410 PRPSAP2O60256 369 aa15.21■□□□□ 0.03
CLIP1-216ENST00000541410 MYCP01106 439 aaPredicted RBP15.21■□□□□ 0.03
CLIP1-216ENST00000541410 NR1D1P20393 614 aa15.21■□□□□ 0.03
CLIP1-216ENST00000541410 SDC4P31431 198 aa15.21■□□□□ 0.03
CLIP1-216ENST00000541410 BCAT1P54687 386 aa15.21■□□□□ 0.03
CLIP1-216ENST00000541410 GUCY1A3Q02108 690 aa15.21■□□□□ 0.03
CLIP1-216ENST00000541410 GPS1Q13098 491 aa15.21■□□□□ 0.03
CLIP1-216ENST00000541410 DEFB115Q30KQ5 88 aa15.21■□□□□ 0.03
CLIP1-216ENST00000541410 MDH1BQ5I0G3 518 aa15.21■□□□□ 0.03
CLIP1-216ENST00000541410 ARHGAP17Q68EM7 881 aa15.21■□□□□ 0.03
CLIP1-216ENST00000541410 RHBDF2Q6PJF5 856 aa15.21■□□□□ 0.03
CLIP1-216ENST00000541410 CTU1Q7Z7A3 348 aaKnown RBP15.21■□□□□ 0.03
CLIP1-216ENST00000541410 FUKQ8N0W3 1084 aa15.21■□□□□ 0.03
CLIP1-216ENST00000541410 EPS8L3Q8TE67 593 aaKnown RBP15.21■□□□□ 0.03
CLIP1-216ENST00000541410 SENP8Q96LD8 212 aa15.21■□□□□ 0.03
CLIP1-216ENST00000541410 LCMT1Q9UIC8 334 aa15.21■□□□□ 0.03
CLIP1-216ENST00000541410 TDRD15B5MCY1 1934 aaKnown RBP15.2■□□□□ 0.02
CLIP1-216ENST00000541410 CASP8AP2Q9UKL3 1982 aa15.2■□□□□ 0.02
CLIP1-216ENST00000541410 NDUFV1P49821 464 aa15.2■□□□□ 0.02
CLIP1-216ENST00000541410 VCPP55072 806 aaKnown RBP15.2■□□□□ 0.02
CLIP1-216ENST00000541410 LPIN1Q14693 890 aa15.2■□□□□ 0.02
CLIP1-216ENST00000541410 OASLQ15646 514 aaKnown RBP15.2■□□□□ 0.02
CLIP1-216ENST00000541410 KYNUQ16719 465 aa15.2■□□□□ 0.02
CLIP1-216ENST00000541410 PPP6R3Q5H9R7 873 aaPredicted RBP15.2■□□□□ 0.02
CLIP1-216ENST00000541410 PIGZQ86VD9 579 aa15.2■□□□□ 0.02
CLIP1-216ENST00000541410 ZC3H18Q86VM9 953 aaKnown RBP15.2■□□□□ 0.02
CLIP1-216ENST00000541410 CCDC33Q8N5R6 958 aa15.2■□□□□ 0.02
CLIP1-216ENST00000541410 ALLCQ8N6M5 410 aa15.2■□□□□ 0.02
CLIP1-216ENST00000541410 CCDC89Q8N998 374 aa15.2■□□□□ 0.02
CLIP1-216ENST00000541410 CMASQ8NFW8 434 aaPredicted RBP15.2■□□□□ 0.02
CLIP1-216ENST00000541410 ADAM2Q99965 735 aa15.2■□□□□ 0.02
CLIP1-216ENST00000541410 TRAIPQ9BWF2 469 aa15.2■□□□□ 0.02
CLIP1-216ENST00000541410 DDX43Q9NXZ2 648 aaKnown RBP15.2■□□□□ 0.02
CLIP1-216ENST00000541410 PSD3Q9NYI0 1048 aa15.2■□□□□ 0.02
CLIP1-216ENST00000541410 SYNJ2BP-COX16A0A087WUM0 186 aa15.2■□□□□ 0.02
CLIP1-216ENST00000541410 F8W810 466 aa15.2■□□□□ 0.02
CLIP1-216ENST00000541410 GOLGA8MH3BSY2 632 aa15.2■□□□□ 0.02
CLIP1-216ENST00000541410 GPR182O15218 404 aa15.2■□□□□ 0.02
CLIP1-216ENST00000541410 RARGP13631 454 aa15.2■□□□□ 0.02
CLIP1-216ENST00000541410 LRPAP1P30533 357 aa15.2■□□□□ 0.02
CLIP1-216ENST00000541410 GBP1P32455 592 aa15.2■□□□□ 0.02
CLIP1-216ENST00000541410 MAGOHP61326 146 aaKnown RBP15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms