RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 ARHGEF16Q5VV41 709 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 PPIL6Q8IXY8 311 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 RNF148Q8N7C7 305 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 ARHGEF26Q96DR7 871 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 HES6Q96HZ4 224 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 VPS33BQ9H267 617 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 OGDHLQ9ULD0 1010 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 ALG6Q9Y672 507 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 SYNJ1O43426 1573 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 CLDN25C9JDP6 229 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 I3L521 148 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 K7ERI5 159 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 TK2O00142 265 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 NPTX2P47972 431 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 GNG2P59768 71 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 SH3D19Q5HYK7 790 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 LDLRAP1Q5SW96 308 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 CAMKK1Q8N5S9 505 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 C1orf131Q8NDD1 294 aaKnown RBP9.05□□□□□ -0.96
YBX3-208ENST00000540447 ACAD9Q9H845 621 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 RAB6BQ9NRW1 208 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 KLHL11Q9NVR0 708 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 ATAD2BQ9ULI0 1458 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 FAM92AA1XBS5 289 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 PLEKP08567 350 aaPredicted RBP9.05□□□□□ -0.96
YBX3-208ENST00000540447 GRSF1Q12849 480 aaKnown RBP eCLIP9.05□□□□□ -0.96
YBX3-208ENST00000540447 COBLL1Q53SF7 1204 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 AMIGO2Q86SJ2 522 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 ZBTB8OSQ8IWT0 167 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 ENGASEQ8NFI3 743 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 UCMAQ8WVF2 138 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 ACSBG1Q96GR2 724 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 SEPHS2Q99611 448 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 LACRTQ9GZZ8 138 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 ARHGEF33A8MVX0 844 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 KCNN4O15554 427 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 PENKP01210 267 aaPredicted RBP9.05□□□□□ -0.96
YBX3-208ENST00000540447 PCP11498 1178 aaKnown RBP9.05□□□□□ -0.96
YBX3-208ENST00000540447 FCER1AP12319 257 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 LIFRP42702 1097 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 MAGEA2P43356 314 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 ERVK-9P63128 1117 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 AMPD2Q01433 879 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 GARNL3Q5VVW2 1013 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 BHLHB9Q6PI77 547 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 SLC13A5Q86YT5 568 aaPredicted RBP9.05□□□□□ -0.96
YBX3-208ENST00000540447 SMYD1Q8NB12 490 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 MCFD2Q8NI22 146 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 SDR42E1Q8WUS8 393 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 EYA3Q99504 573 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 KCTD14Q9BQ13 255 aaPredicted RBP9.05□□□□□ -0.96
YBX3-208ENST00000540447 THUMPD3Q9BV44 507 aaKnown RBP9.05□□□□□ -0.96
YBX3-208ENST00000540447 TIPINQ9BVW5 301 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 TTYH1Q9H313 450 aaPredicted RBP9.05□□□□□ -0.96
YBX3-208ENST00000540447 SNX8Q9Y5X2 465 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 GAPVD1Q14C86 1478 aa9.05□□□□□ -0.96
YBX3-208ENST00000540447 NPHP3-ACAD11A0A0J9YXS1 232 aa9.04□□□□□ -0.96
YBX3-208ENST00000540447 E5RI56 91 aa9.04□□□□□ -0.96
YBX3-208ENST00000540447 F8W810 466 aa9.04□□□□□ -0.96
YBX3-208ENST00000540447 H7C0S8 307 aa9.04□□□□□ -0.96
YBX3-208ENST00000540447 TMCC2O75069 709 aa9.04□□□□□ -0.96
YBX3-208ENST00000540447 PRKD3O94806 890 aa9.04□□□□□ -0.96
YBX3-208ENST00000540447 ATG7O95352 703 aa9.04□□□□□ -0.96
YBX3-208ENST00000540447 TFRCP02786 760 aaKnown RBP9.04□□□□□ -0.96
YBX3-208ENST00000540447 PRKAR1AP10644 381 aa9.04□□□□□ -0.96
YBX3-208ENST00000540447 VCLP18206 1134 aa9.04□□□□□ -0.96
YBX3-208ENST00000540447 RAP1GAPP47736 663 aa9.04□□□□□ -0.96
YBX3-208ENST00000540447 LPCAT4Q643R3 524 aa9.04□□□□□ -0.96
YBX3-208ENST00000540447 NIPAL1Q6NVV3 410 aa9.04□□□□□ -0.96
YBX3-208ENST00000540447 CYP2R1Q6VVX0 501 aa9.04□□□□□ -0.96
YBX3-208ENST00000540447 DSTYKQ6XUX3 929 aa9.04□□□□□ -0.96
YBX3-208ENST00000540447 FASTKD5Q7L8L6 764 aaKnown RBP9.04□□□□□ -0.96
YBX3-208ENST00000540447 ATG16L2Q8NAA4 619 aa9.04□□□□□ -0.96
YBX3-208ENST00000540447 PAFAH2Q99487 392 aa9.04□□□□□ -0.96
YBX3-208ENST00000540447 FSD1LQ9BXM9 530 aa9.04□□□□□ -0.96
YBX3-208ENST00000540447 MRPL9Q9BYD2 267 aaKnown RBP9.04□□□□□ -0.96
YBX3-208ENST00000540447 EBF2Q9HAK2 575 aa9.04□□□□□ -0.96
YBX3-208ENST00000540447 TOR4AQ9NXH8 423 aa9.04□□□□□ -0.96
YBX3-208ENST00000540447 EDARQ9UNE0 448 aa9.04□□□□□ -0.96
YBX3-208ENST00000540447 INO80B-WBP1J3KQ70 363 aa9.04□□□□□ -0.96
YBX3-208ENST00000540447 CCNT2O60583 730 aaKnown RBP9.04□□□□□ -0.96
YBX3-208ENST00000540447 SHBGP04278 402 aa9.04□□□□□ -0.96
YBX3-208ENST00000540447 WARSP23381 471 aaKnown RBP9.04□□□□□ -0.96
YBX3-208ENST00000540447 GCLMP48507 274 aa9.04□□□□□ -0.96
YBX3-208ENST00000540447 PKN2Q16513 984 aaKnown RBP9.04□□□□□ -0.96
YBX3-208ENST00000540447 FAM98BQ52LJ0 330 aaKnown RBP9.04□□□□□ -0.96
YBX3-208ENST00000540447 RAD54LQ92698 747 aa9.04□□□□□ -0.96
YBX3-208ENST00000540447 SYN2Q92777 582 aaPredicted RBP9.04□□□□□ -0.96
YBX3-208ENST00000540447 TADA1Q96BN2 335 aa9.04□□□□□ -0.96
YBX3-208ENST00000540447 TSEN34Q9BSV6 310 aaKnown RBP9.04□□□□□ -0.96
YBX3-208ENST00000540447 PAGR1Q9BTK6 254 aa9.04□□□□□ -0.96
YBX3-208ENST00000540447 ZNF717Q9BY31 904 aaPredicted RBP9.04□□□□□ -0.96
YBX3-208ENST00000540447 MAF1Q9H063 256 aa9.04□□□□□ -0.96
YBX3-208ENST00000540447 CDH19Q9H159 772 aa9.04□□□□□ -0.96
YBX3-208ENST00000540447 GNPTGQ9UJJ9 305 aa9.04□□□□□ -0.96
YBX3-208ENST00000540447 KIF14Q15058 1648 aa9.04□□□□□ -0.96
YBX3-208ENST00000540447 LOC110117498-PIK3R3F6TDL0 507 aa9.04□□□□□ -0.96
YBX3-208ENST00000540447 GARTP22102 1010 aa9.04□□□□□ -0.96
YBX3-208ENST00000540447 NFYCQ13952 458 aa9.04□□□□□ -0.96
YBX3-208ENST00000540447 RABL6Q3YEC7 729 aaPredicted RBP9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms