RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 PLA2G4AP47712 749 aa13.73□□□□□ -0.21
CCDC42-202ENST00000539522 ALDH1A3P47895 512 aa13.73□□□□□ -0.21
CCDC42-202ENST00000539522 SLC5A3P53794 718 aa13.73□□□□□ -0.21
CCDC42-202ENST00000539522 RPL10AP62906 217 aaKnown RBP13.73□□□□□ -0.21
CCDC42-202ENST00000539522 PLD1Q13393 1074 aa13.73□□□□□ -0.21
CCDC42-202ENST00000539522 CBX2Q14781 532 aaPredicted RBP13.73□□□□□ -0.21
CCDC42-202ENST00000539522 SMAD2Q15796 467 aaKnown RBP13.73□□□□□ -0.21
CCDC42-202ENST00000539522 WDR59Q6PJI9 974 aa13.73□□□□□ -0.21
CCDC42-202ENST00000539522 PASD1Q8IV76 773 aa13.73□□□□□ -0.21
CCDC42-202ENST00000539522 CPLX3Q8WVH0 158 aa13.73□□□□□ -0.21
CCDC42-202ENST00000539522 NDRG1Q92597 394 aaKnown RBP13.73□□□□□ -0.21
CCDC42-202ENST00000539522 TRMT2BQ96GJ1 504 aaKnown RBP13.73□□□□□ -0.21
CCDC42-202ENST00000539522 AVENQ9NQS1 362 aaPredicted RBP13.73□□□□□ -0.21
CCDC42-202ENST00000539522 DPP7Q9UHL4 492 aa13.73□□□□□ -0.21
CCDC42-202ENST00000539522 USP3Q9Y6I4 520 aa13.73□□□□□ -0.21
CCDC42-202ENST00000539522 NUP210Q8TEM1 1887 aaPredicted RBP13.73□□□□□ -0.21
CCDC42-202ENST00000539522 CLUHO75153 1309 aa13.72□□□□□ -0.21
CCDC42-202ENST00000539522 M0QYV0 167 aa13.72□□□□□ -0.21
CCDC42-202ENST00000539522 XPO1O14980 1071 aaKnown RBP13.72□□□□□ -0.21
CCDC42-202ENST00000539522 PLEKP08567 350 aaPredicted RBP13.72□□□□□ -0.21
CCDC42-202ENST00000539522 SRGAP2BP0DMP2 458 aa13.72□□□□□ -0.21
CCDC42-202ENST00000539522 CEBPBP17676 345 aa13.72□□□□□ -0.21
CCDC42-202ENST00000539522 PTPN2P17706 415 aa13.72□□□□□ -0.21
CCDC42-202ENST00000539522 CDH5P33151 784 aaPredicted RBP13.72□□□□□ -0.21
CCDC42-202ENST00000539522 KIF11P52732 1056 aa13.72□□□□□ -0.21
CCDC42-202ENST00000539522 BCAT1P54687 386 aa13.72□□□□□ -0.21
CCDC42-202ENST00000539522 EPHB3P54753 998 aa13.72□□□□□ -0.21
CCDC42-202ENST00000539522 ARID5AQ03989 594 aa13.72□□□□□ -0.21
CCDC42-202ENST00000539522 BST2Q10589 180 aaKnown RBP13.72□□□□□ -0.21
CCDC42-202ENST00000539522 TAF3Q5VWG9 929 aa13.72□□□□□ -0.21
CCDC42-202ENST00000539522 PTCRAQ6ISU1 281 aaPredicted RBP13.72□□□□□ -0.21
CCDC42-202ENST00000539522 CYP26C1Q6V0L0 522 aa13.72□□□□□ -0.21
CCDC42-202ENST00000539522 DENND5BQ6ZUT9 1274 aa13.72□□□□□ -0.21
CCDC42-202ENST00000539522 CNGA4Q8IV77 575 aa13.72□□□□□ -0.21
CCDC42-202ENST00000539522 ZNF397Q8NF99 534 aaPredicted RBP13.72□□□□□ -0.21
CCDC42-202ENST00000539522 CLEC4CQ8WTT0 213 aa13.72□□□□□ -0.21
CCDC42-202ENST00000539522 ZSWIM3Q96MP5 696 aa13.72□□□□□ -0.21
CCDC42-202ENST00000539522 SPAG5Q96R06 1193 aa13.72□□□□□ -0.21
CCDC42-202ENST00000539522 MYADMQ96S97 322 aa13.72□□□□□ -0.21
CCDC42-202ENST00000539522 UBXN6Q9BZV1 441 aa13.72□□□□□ -0.21
CCDC42-202ENST00000539522 PNPLA8Q9NP80 782 aa13.72□□□□□ -0.21
CCDC42-202ENST00000539522 OSER1Q9NX31 292 aa13.72□□□□□ -0.21
CCDC42-202ENST00000539522 THEGQ9P2T0 379 aa13.72□□□□□ -0.21
CCDC42-202ENST00000539522 MYO6Q9UM54 1294 aa13.72□□□□□ -0.21
CCDC42-202ENST00000539522 LUC7L2Q9Y383 392 aaKnown RBP13.72□□□□□ -0.21
CCDC42-202ENST00000539522 ASB3Q9Y575 518 aa13.72□□□□□ -0.21
CCDC42-202ENST00000539522 KIF26AQ9ULI4 1882 aaPredicted RBP13.72□□□□□ -0.21
CCDC42-202ENST00000539522 A0A1W2PRU2 124 aa13.71□□□□□ -0.21
CCDC42-202ENST00000539522 PIK3R2O00459 728 aa13.71□□□□□ -0.21
CCDC42-202ENST00000539522 CYP1A1P04798 512 aaPredicted RBP13.71□□□□□ -0.21
CCDC42-202ENST00000539522 ZDHHC11BP0C7U3 371 aa13.71□□□□□ -0.21
CCDC42-202ENST00000539522 SKILP12757 684 aa13.71□□□□□ -0.21
CCDC42-202ENST00000539522 HNRNPH3P31942 346 aaKnown RBP13.71□□□□□ -0.21
CCDC42-202ENST00000539522 PRKCIP41743 596 aa13.71□□□□□ -0.21
CCDC42-202ENST00000539522 RGS7P49802 495 aa13.71□□□□□ -0.21
CCDC42-202ENST00000539522 ZBED6P86452 979 aa13.71□□□□□ -0.21
CCDC42-202ENST00000539522 CDR2Q01850 454 aa13.71□□□□□ -0.21
CCDC42-202ENST00000539522 PTK2Q05397 1052 aa13.71□□□□□ -0.21
CCDC42-202ENST00000539522 MEA1Q16626 185 aa13.71□□□□□ -0.21
CCDC42-202ENST00000539522 TSR1Q2NL82 804 aaKnown RBP13.71□□□□□ -0.21
CCDC42-202ENST00000539522 PABPC1LQ4VXU2 614 aaKnown RBP13.71□□□□□ -0.21
CCDC42-202ENST00000539522 CACNA2D4Q7Z3S7 1137 aa13.71□□□□□ -0.21
CCDC42-202ENST00000539522 ZNF571Q7Z3V5 609 aaPredicted RBP13.71□□□□□ -0.21
CCDC42-202ENST00000539522 SCD5Q86SK9 330 aa13.71□□□□□ -0.21
CCDC42-202ENST00000539522 NUP93Q8N1F7 819 aa13.71□□□□□ -0.21
CCDC42-202ENST00000539522 C1orf131Q8NDD1 294 aaKnown RBP13.71□□□□□ -0.21
CCDC42-202ENST00000539522 ST13P5Q8NFI4 369 aaPredicted RBP13.71□□□□□ -0.21
CCDC42-202ENST00000539522 ING5Q8WYH8 240 aa13.71□□□□□ -0.21
CCDC42-202ENST00000539522 KCTD13Q8WZ19 329 aa13.71□□□□□ -0.21
CCDC42-202ENST00000539522 PIWIL1Q96J94 861 aaKnown RBP13.71□□□□□ -0.21
CCDC42-202ENST00000539522 CEP295NLQ96MC4 621 aa13.71□□□□□ -0.21
CCDC42-202ENST00000539522 ZNF512Q96ME7 567 aaPredicted RBP13.71□□□□□ -0.21
CCDC42-202ENST00000539522 ZNF830Q96NB3 372 aaPredicted RBP13.71□□□□□ -0.21
CCDC42-202ENST00000539522 PANX2Q96RD6 677 aa13.71□□□□□ -0.21
CCDC42-202ENST00000539522 SLC22A12Q96S37 553 aa13.71□□□□□ -0.21
CCDC42-202ENST00000539522 CPXM1Q96SM3 734 aa13.71□□□□□ -0.21
CCDC42-202ENST00000539522 SLC4A5Q9BY07 1137 aa13.71□□□□□ -0.21
CCDC42-202ENST00000539522 LHX5Q9H2C1 402 aa13.71□□□□□ -0.21
CCDC42-202ENST00000539522 NMUR1Q9HB89 426 aa13.71□□□□□ -0.21
CCDC42-202ENST00000539522 MAGED2Q9UNF1 606 aaPredicted RBP13.71□□□□□ -0.21
CCDC42-202ENST00000539522 TRIOO75962 3097 aa13.71□□□□□ -0.22
CCDC42-202ENST00000539522 ATP8B3O60423 1300 aa13.7□□□□□ -0.22
CCDC42-202ENST00000539522 XYLBO75191 536 aa13.7□□□□□ -0.22
CCDC42-202ENST00000539522 SETSIPP0DME0 302 aa13.7□□□□□ -0.22
CCDC42-202ENST00000539522 CSH1P0DML2 217 aa13.7□□□□□ -0.22
CCDC42-202ENST00000539522 CSH2P0DML3 217 aa13.7□□□□□ -0.22
CCDC42-202ENST00000539522 MYL4P12829 197 aa13.7□□□□□ -0.22
CCDC42-202ENST00000539522 UNGP13051 313 aaPredicted RBP13.7□□□□□ -0.22
CCDC42-202ENST00000539522 GABRR2P28476 465 aa13.7□□□□□ -0.22
CCDC42-202ENST00000539522 MTHFRP42898 656 aa13.7□□□□□ -0.22
CCDC42-202ENST00000539522 ADKP55263 362 aaKnown RBP13.7□□□□□ -0.22
CCDC42-202ENST00000539522 NOMO3P69849 1222 aa13.7□□□□□ -0.22
CCDC42-202ENST00000539522 ZXDBP98169 803 aa13.7□□□□□ -0.22
CCDC42-202ENST00000539522 CYP4F8P98187 520 aa13.7□□□□□ -0.22
CCDC42-202ENST00000539522 TAF10Q12962 218 aa13.7□□□□□ -0.22
CCDC42-202ENST00000539522 PTP4A2Q12974 167 aa13.7□□□□□ -0.22
CCDC42-202ENST00000539522 STILQ15468 1287 aa13.7□□□□□ -0.22
CCDC42-202ENST00000539522 TEAD2Q15562 447 aa13.7□□□□□ -0.22
CCDC42-202ENST00000539522 PTPN20Q4JDL3 420 aa13.7□□□□□ -0.22
CCDC42-202ENST00000539522 ATAT1Q5SQI0 421 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms