RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 CALN1Q9BXU9 219 aa6.94□□□□□ -1.3
USP28-206ENST00000538224 SLC4A5Q9BY07 1137 aa6.94□□□□□ -1.3
USP28-206ENST00000538224 FAM49AQ9H0Q0 323 aaPredicted RBP6.94□□□□□ -1.3
USP28-206ENST00000538224 SNX25Q9H3E2 840 aa6.94□□□□□ -1.3
USP28-206ENST00000538224 SAYSD1Q9NPB0 183 aa6.94□□□□□ -1.3
USP28-206ENST00000538224 SETD4Q9NVD3 440 aa6.94□□□□□ -1.3
USP28-206ENST00000538224 GDAP2Q9NXN4 497 aa6.94□□□□□ -1.3
USP28-206ENST00000538224 SNTG2Q9NY99 539 aa6.94□□□□□ -1.3
USP28-206ENST00000538224 PAK5Q9P286 719 aa6.94□□□□□ -1.3
USP28-206ENST00000538224 SMG5Q9UPR3 1016 aaKnown RBP6.94□□□□□ -1.3
USP28-206ENST00000538224 GNEQ9Y223 722 aaKnown RBP6.94□□□□□ -1.3
USP28-206ENST00000538224 SNX9Q9Y5X1 595 aa6.94□□□□□ -1.3
USP28-206ENST00000538224 TSC2P49815 1807 aa6.94□□□□□ -1.3
USP28-206ENST00000538224 TRIP12Q14669 1992 aaPredicted RBP6.93□□□□□ -1.3
USP28-206ENST00000538224 C17orf102A2RUQ5 167 aa6.93□□□□□ -1.3
USP28-206ENST00000538224 A8MXQ7 604 aa6.93□□□□□ -1.3
USP28-206ENST00000538224 E7ESA3 106 aa6.93□□□□□ -1.3
USP28-206ENST00000538224 APOL1O14791 398 aa6.93□□□□□ -1.3
USP28-206ENST00000538224 PRPF4O43172 522 aaKnown RBP eCLIP6.93□□□□□ -1.3
USP28-206ENST00000538224 HUS1O60921 280 aa6.93□□□□□ -1.3
USP28-206ENST00000538224 CSDE1O75534 798 aaKnown RBP6.93□□□□□ -1.3
USP28-206ENST00000538224 FSBPO95073 299 aa6.93□□□□□ -1.3
USP28-206ENST00000538224 CPP00450 1065 aa6.93□□□□□ -1.3
USP28-206ENST00000538224 IFNB1P01574 187 aa6.93□□□□□ -1.3
USP28-206ENST00000538224 RBP3P10745 1247 aa6.93□□□□□ -1.3
USP28-206ENST00000538224 GHRP10912 638 aa6.93□□□□□ -1.3
USP28-206ENST00000538224 BRAFP15056 766 aa6.93□□□□□ -1.3
USP28-206ENST00000538224 TCF4P15884 667 aa6.93□□□□□ -1.3
USP28-206ENST00000538224 DRD4P21917 467 aa6.93□□□□□ -1.3
USP28-206ENST00000538224 PAX3P23760 479 aa6.93□□□□□ -1.3
USP28-206ENST00000538224 IL1R2P27930 398 aa6.93□□□□□ -1.3
USP28-206ENST00000538224 HOXA11P31270 313 aaPredicted RBP6.93□□□□□ -1.3
USP28-206ENST00000538224 GBP2P32456 591 aaPredicted RBP6.93□□□□□ -1.3
USP28-206ENST00000538224 SLCO1A2P46721 670 aa6.93□□□□□ -1.3
USP28-206ENST00000538224 CTCFP49711 727 aaPredicted RBP6.93□□□□□ -1.3
USP28-206ENST00000538224 SEC24CP53992 1094 aa6.93□□□□□ -1.3
USP28-206ENST00000538224 INHBEP58166 350 aa6.93□□□□□ -1.3
USP28-206ENST00000538224 DYNLT1P63172 113 aa6.93□□□□□ -1.3
USP28-206ENST00000538224 ADAM17P78536 824 aa6.93□□□□□ -1.3
USP28-206ENST00000538224 IL9RQ01113 521 aa6.93□□□□□ -1.3
USP28-206ENST00000538224 RNASELQ05823 741 aaKnown RBP6.93□□□□□ -1.3
USP28-206ENST00000538224 ORC1Q13415 861 aa6.93□□□□□ -1.3
USP28-206ENST00000538224 SNX17Q15036 470 aa6.93□□□□□ -1.3
USP28-206ENST00000538224 TAF1CQ15572 869 aaPredicted RBP6.93□□□□□ -1.3
USP28-206ENST00000538224 SMTNL2Q2TAL5 461 aa6.93□□□□□ -1.3
USP28-206ENST00000538224 XKR4Q5GH76 650 aa6.93□□□□□ -1.3
USP28-206ENST00000538224 EFHC1Q5JVL4 640 aa6.93□□□□□ -1.3
USP28-206ENST00000538224 TXNRD3NBQ6F5E7 133 aa6.93□□□□□ -1.3
USP28-206ENST00000538224 OLFML1Q6UWY5 402 aa6.93□□□□□ -1.3
USP28-206ENST00000538224 ALKAL1Q6UXT8 129 aa6.93□□□□□ -1.3
USP28-206ENST00000538224 BZW1Q7L1Q6 419 aaKnown RBP6.93□□□□□ -1.3
USP28-206ENST00000538224 SLC26A9Q7LBE3 791 aa6.93□□□□□ -1.3
USP28-206ENST00000538224 STRADAQ7RTN6 431 aa6.93□□□□□ -1.3
USP28-206ENST00000538224 EXOC3L1Q86VI1 746 aa6.93□□□□□ -1.3
USP28-206ENST00000538224 PSTKQ8IV42 348 aaKnown RBP6.93□□□□□ -1.3
USP28-206ENST00000538224 CDKL3Q8IVW4 592 aaPredicted RBP6.93□□□□□ -1.3
USP28-206ENST00000538224 CCDC13Q8IYE1 715 aa6.93□□□□□ -1.3
USP28-206ENST00000538224 PDIK1LQ8N165 341 aa6.93□□□□□ -1.3
USP28-206ENST00000538224 CRYBG2Q8N1P7 616 aa6.93□□□□□ -1.3
USP28-206ENST00000538224 TOP6BLQ8N6T0 577 aa6.93□□□□□ -1.3
USP28-206ENST00000538224 EMC1Q8N766 993 aa6.93□□□□□ -1.3
USP28-206ENST00000538224 ANKRD52Q8NB46 1076 aa6.93□□□□□ -1.3
USP28-206ENST00000538224 APPL2Q8NEU8 664 aa6.93□□□□□ -1.3
USP28-206ENST00000538224 OR6B3Q8NGW1 331 aa6.93□□□□□ -1.3
USP28-206ENST00000538224 UHMK1Q8TAS1 419 aaKnown RBP6.93□□□□□ -1.3
USP28-206ENST00000538224 SPATA18Q8TC71 538 aa6.93□□□□□ -1.3
USP28-206ENST00000538224 SLC35F5Q8WV83 523 aa6.93□□□□□ -1.3
USP28-206ENST00000538224 RXFP2Q8WXD0 754 aa6.93□□□□□ -1.3
USP28-206ENST00000538224 GRAMD1AQ96CP6 724 aa6.93□□□□□ -1.3
USP28-206ENST00000538224 SEC16BQ96JE7 1060 aa6.93□□□□□ -1.3
USP28-206ENST00000538224 C9orf72Q96LT7 481 aa6.93□□□□□ -1.3
USP28-206ENST00000538224 OSMRQ99650 979 aa6.93□□□□□ -1.3
USP28-206ENST00000538224 FERMT1Q9BQL6 677 aa6.93□□□□□ -1.3
USP28-206ENST00000538224 TMEM121Q9BTD3 319 aa6.93□□□□□ -1.3
USP28-206ENST00000538224 ADAM7Q9H2U9 754 aa6.93□□□□□ -1.3
USP28-206ENST00000538224 SSU72Q9NP77 194 aaKnown RBP6.93□□□□□ -1.3
USP28-206ENST00000538224 STAU2Q9NUL3 570 aaKnown RBP eCLIP6.93□□□□□ -1.3
USP28-206ENST00000538224 SLC38A7Q9NVC3 462 aa6.93□□□□□ -1.3
USP28-206ENST00000538224 RCOR3Q9P2K3 495 aaPredicted RBP6.93□□□□□ -1.3
USP28-206ENST00000538224 PSMC3IPQ9P2W1 217 aaPredicted RBP6.93□□□□□ -1.3
USP28-206ENST00000538224 PIN4Q9Y237 131 aaKnown RBP6.93□□□□□ -1.3
USP28-206ENST00000538224 FARP1Q9Y4F1 1045 aaPredicted RBP6.93□□□□□ -1.3
USP28-206ENST00000538224 CLUHO75153 1309 aa6.93□□□□□ -1.3
USP28-206ENST00000538224 TDRD15B5MCY1 1934 aaKnown RBP6.93□□□□□ -1.3
USP28-206ENST00000538224 SCN10AQ9Y5Y9 1956 aa6.93□□□□□ -1.3
USP28-206ENST00000538224 PATJQ8NI35 1801 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 TMEM120BA0PK00 339 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 BCLAF3A2AJT9 711 aaKnown RBP6.92□□□□□ -1.3
USP28-206ENST00000538224 FAM47DPA6NHR8 397 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 KPNA7A9QM74 516 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 HACD1B0YJ81 288 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 RASA4BC9J798 803 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 PIRO00625 290 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 XPO1O14980 1071 aaKnown RBP6.92□□□□□ -1.3
USP28-206ENST00000538224 CHADO15335 359 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 RASA4O43374 803 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 ZBED1O96006 694 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 PFKMP08237 780 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 GSTA1P08263 222 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 MYL3P08590 195 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms