RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 PCDHB4Q9Y5E5 795 aa15.91■□□□□ 0.14
CPSF1-208ENST00000532560 MYH10P35580 1976 aa15.91■□□□□ 0.14
CPSF1-208ENST00000532560 TRAV19A0A0A6YYK7 116 aa15.9■□□□□ 0.14
CPSF1-208ENST00000532560 ZNF840PA6NDX5 716 aa15.9■□□□□ 0.14
CPSF1-208ENST00000532560 DPYSL4O14531 572 aa15.9■□□□□ 0.14
CPSF1-208ENST00000532560 VDRP11473 427 aa15.9■□□□□ 0.14
CPSF1-208ENST00000532560 PON1P27169 355 aa15.9■□□□□ 0.14
CPSF1-208ENST00000532560 ZNF132P52740 706 aa15.9■□□□□ 0.14
CPSF1-208ENST00000532560 IFRD2Q12894 506 aaPredicted RBP15.9■□□□□ 0.14
CPSF1-208ENST00000532560 GRM2Q14416 872 aa15.9■□□□□ 0.14
CPSF1-208ENST00000532560 SGO2Q562F6 1265 aa15.9■□□□□ 0.14
CPSF1-208ENST00000532560 SMYD5Q6GMV2 418 aa15.9■□□□□ 0.14
CPSF1-208ENST00000532560 SIX5Q8N196 739 aa15.9■□□□□ 0.14
CPSF1-208ENST00000532560 CELF5Q8N6W0 485 aaKnown RBP15.9■□□□□ 0.14
CPSF1-208ENST00000532560 SCAMP5Q8TAC9 235 aa15.9■□□□□ 0.14
CPSF1-208ENST00000532560 DNASE1L2Q92874 299 aa15.9■□□□□ 0.14
CPSF1-208ENST00000532560 USP13Q92995 863 aaPredicted RBP15.9■□□□□ 0.14
CPSF1-208ENST00000532560 PBXIP1Q96AQ6 731 aa15.9■□□□□ 0.14
CPSF1-208ENST00000532560 FBXO44Q9H4M3 255 aa15.9■□□□□ 0.14
CPSF1-208ENST00000532560 TRPC7Q9HCX4 862 aa15.9■□□□□ 0.14
CPSF1-208ENST00000532560 ARHGEF3Q9NR81 526 aa15.9■□□□□ 0.14
CPSF1-208ENST00000532560 KIAA1257Q9ULG3 409 aa15.9■□□□□ 0.14
CPSF1-208ENST00000532560 CNTN6Q9UQ52 1028 aa15.9■□□□□ 0.14
CPSF1-208ENST00000532560 COL4A2P08572 1712 aa15.9■□□□□ 0.14
CPSF1-208ENST00000532560 C2orf78A6NCI8 922 aa15.89■□□□□ 0.13
CPSF1-208ENST00000532560 O00370 1275 aa15.89■□□□□ 0.13
CPSF1-208ENST00000532560 LETM1O95202 739 aaPredicted RBP15.89■□□□□ 0.13
CPSF1-208ENST00000532560 USP17L7P0C7H9 530 aa15.89■□□□□ 0.13
CPSF1-208ENST00000532560 CD19P15391 556 aa15.89■□□□□ 0.13
CPSF1-208ENST00000532560 SLC9A1P19634 815 aa15.89■□□□□ 0.13
CPSF1-208ENST00000532560 BCAT1P54687 386 aa15.89■□□□□ 0.13
CPSF1-208ENST00000532560 GOLGA7BQ2TAP0 167 aa15.89■□□□□ 0.13
CPSF1-208ENST00000532560 SNX30Q5VWJ9 437 aa15.89■□□□□ 0.13
CPSF1-208ENST00000532560 GPRIN1Q7Z2K8 1008 aa15.89■□□□□ 0.13
CPSF1-208ENST00000532560 FBXL6Q8N531 539 aa15.89■□□□□ 0.13
CPSF1-208ENST00000532560 ANKRD52Q8NB46 1076 aa15.89■□□□□ 0.13
CPSF1-208ENST00000532560 RBBP8NLQ8NC74 664 aaPredicted RBP15.89■□□□□ 0.13
CPSF1-208ENST00000532560 LRRC3BQ96PB8 259 aa15.89■□□□□ 0.13
CPSF1-208ENST00000532560 NAT10Q9H0A0 1025 aaKnown RBP15.89■□□□□ 0.13
CPSF1-208ENST00000532560 SMG9Q9H0W8 520 aaKnown RBP15.89■□□□□ 0.13
CPSF1-208ENST00000532560 BRD9Q9H8M2 597 aa15.89■□□□□ 0.13
CPSF1-208ENST00000532560 UBE2TQ9NPD8 197 aaPredicted RBP15.89■□□□□ 0.13
CPSF1-208ENST00000532560 TRPV5Q9NQA5 729 aa15.89■□□□□ 0.13
CPSF1-208ENST00000532560 TDP1Q9NUW8 608 aa15.89■□□□□ 0.13
CPSF1-208ENST00000532560 FANCLQ9NW38 375 aa15.89■□□□□ 0.13
CPSF1-208ENST00000532560 TSPAN16Q9UKR8 245 aa15.89■□□□□ 0.13
CPSF1-208ENST00000532560 MYO16Q9Y6X6 1858 aa15.88■□□□□ 0.13
CPSF1-208ENST00000532560 HELZP42694 1942 aaKnown RBP15.88■□□□□ 0.13
CPSF1-208ENST00000532560 KRBA1A5PL33 1030 aa15.88■□□□□ 0.13
CPSF1-208ENST00000532560 ARNTLO00327 626 aa15.88■□□□□ 0.13
CPSF1-208ENST00000532560 CHADO15335 359 aa15.88■□□□□ 0.13
CPSF1-208ENST00000532560 OLFM2O95897 454 aa15.88■□□□□ 0.13
CPSF1-208ENST00000532560 OAS1P00973 400 aaKnown RBP15.88■□□□□ 0.13
CPSF1-208ENST00000532560 PDGFBP01127 241 aaPredicted RBP15.88■□□□□ 0.13
CPSF1-208ENST00000532560 CKMP06732 381 aa15.88■□□□□ 0.13
CPSF1-208ENST00000532560 ZDHHC11BP0C7U3 371 aa15.88■□□□□ 0.13
CPSF1-208ENST00000532560 GDI1P31150 447 aa15.88■□□□□ 0.13
CPSF1-208ENST00000532560 TUBP50607 506 aa15.88■□□□□ 0.13
CPSF1-208ENST00000532560 MFAP3P55082 362 aa15.88■□□□□ 0.13
CPSF1-208ENST00000532560 SLC8A3P57103 927 aa15.88■□□□□ 0.13
CPSF1-208ENST00000532560 USP4Q13107 963 aa15.88■□□□□ 0.13
CPSF1-208ENST00000532560 KRT31Q15323 416 aa15.88■□□□□ 0.13
CPSF1-208ENST00000532560 STILQ15468 1287 aa15.88■□□□□ 0.13
CPSF1-208ENST00000532560 ANO6Q4KMQ2 910 aa15.88■□□□□ 0.13
CPSF1-208ENST00000532560 TTC30AQ86WT1 665 aa15.88■□□□□ 0.13
CPSF1-208ENST00000532560 YAF2Q8IY57 180 aa15.88■□□□□ 0.13
CPSF1-208ENST00000532560 BPIFB1Q8TDL5 484 aa15.88■□□□□ 0.13
CPSF1-208ENST00000532560 IRF7Q92985 503 aa15.88■□□□□ 0.13
CPSF1-208ENST00000532560 SLC22A12Q96S37 553 aa15.88■□□□□ 0.13
CPSF1-208ENST00000532560 BPIFA3Q9BQP9 254 aa15.88■□□□□ 0.13
CPSF1-208ENST00000532560 UBXN6Q9BZV1 441 aa15.88■□□□□ 0.13
CPSF1-208ENST00000532560 MFSD1Q9H3U5 465 aa15.88■□□□□ 0.13
CPSF1-208ENST00000532560 SIX2Q9NPC8 291 aa15.88■□□□□ 0.13
CPSF1-208ENST00000532560 TAB2Q9NYJ8 693 aa15.88■□□□□ 0.13
CPSF1-208ENST00000532560 GMIPQ9P107 970 aa15.88■□□□□ 0.13
CPSF1-208ENST00000532560 HESX1Q9UBX0 185 aa15.88■□□□□ 0.13
CPSF1-208ENST00000532560 CA14Q9ULX7 337 aa15.88■□□□□ 0.13
CPSF1-208ENST00000532560 ARHGAP26Q9UNA1 814 aa15.88■□□□□ 0.13
CPSF1-208ENST00000532560 SCML2Q9UQR0 700 aa15.88■□□□□ 0.13
CPSF1-208ENST00000532560 CCL26Q9Y258 94 aa15.88■□□□□ 0.13
CPSF1-208ENST00000532560 RNF225M0QZC1 329 aaPredicted RBP15.87■□□□□ 0.13
CPSF1-208ENST00000532560 ZNF263O14978 683 aa15.87■□□□□ 0.13
CPSF1-208ENST00000532560 XPO1O14980 1071 aaKnown RBP15.87■□□□□ 0.13
CPSF1-208ENST00000532560 SETSIPP0DME0 302 aa15.87■□□□□ 0.13
CPSF1-208ENST00000532560 TCF3P15923 654 aa15.87■□□□□ 0.13
CPSF1-208ENST00000532560 ZNF18P17022 549 aa15.87■□□□□ 0.13
CPSF1-208ENST00000532560 HDCP19113 662 aa15.87■□□□□ 0.13
CPSF1-208ENST00000532560 KIF11P52732 1056 aa15.87■□□□□ 0.13
CPSF1-208ENST00000532560 SLC7A9P82251 487 aa15.87■□□□□ 0.13
CPSF1-208ENST00000532560 PLCB2Q00722 1185 aa15.87■□□□□ 0.13
CPSF1-208ENST00000532560 APBA1Q02410 837 aa15.87■□□□□ 0.13
CPSF1-208ENST00000532560 PRKCQQ04759 706 aa15.87■□□□□ 0.13
CPSF1-208ENST00000532560 BST2Q10589 180 aaKnown RBP15.87■□□□□ 0.13
CPSF1-208ENST00000532560 NCAPHQ15003 741 aa15.87■□□□□ 0.13
CPSF1-208ENST00000532560 MLF2Q15773 248 aaPredicted RBP15.87■□□□□ 0.13
CPSF1-208ENST00000532560 ARHGAP29Q52LW3 1261 aa15.87■□□□□ 0.13
CPSF1-208ENST00000532560 CWF19L1Q69YN2 538 aaKnown RBP15.87■□□□□ 0.13
CPSF1-208ENST00000532560 GJB7Q6PEY0 223 aa15.87■□□□□ 0.13
CPSF1-208ENST00000532560 LCLAT1Q6UWP7 414 aa15.87■□□□□ 0.13
CPSF1-208ENST00000532560 GPIHBP1Q8IV16 184 aa15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms