RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 WDTC1Q8N5D0 677 aa16.19■□□□□ 0.18
LSM1-203ENST00000520755 ZMIZ2Q8NF64 920 aa16.19■□□□□ 0.18
LSM1-203ENST00000520755 BAG1Q99933 345 aaPredicted RBP16.19■□□□□ 0.18
LSM1-203ENST00000520755 CORO1BQ9BR76 489 aa16.19■□□□□ 0.18
LSM1-203ENST00000520755 NHEJ1Q9H9Q4 299 aaPredicted RBP16.19■□□□□ 0.18
LSM1-203ENST00000520755 ZNHIT6Q9NWK9 470 aaKnown RBP16.19■□□□□ 0.18
LSM1-203ENST00000520755 BZW2Q9Y6E2 419 aaKnown RBP16.19■□□□□ 0.18
LSM1-203ENST00000520755 C5orf42Q9H799 3197 aa16.19■□□□□ 0.18
LSM1-203ENST00000520755 A0A087X0T9 212 aa16.18■□□□□ 0.18
LSM1-203ENST00000520755 F8VP50 259 aa16.18■□□□□ 0.18
LSM1-203ENST00000520755 ZNF263O14978 683 aa16.18■□□□□ 0.18
LSM1-203ENST00000520755 TRIM66O15016 1216 aa16.18■□□□□ 0.18
LSM1-203ENST00000520755 MED7O43513 233 aa16.18■□□□□ 0.18
LSM1-203ENST00000520755 PAPLNO95428 1278 aa16.18■□□□□ 0.18
LSM1-203ENST00000520755 POU2F2P09086 479 aa16.18■□□□□ 0.18
LSM1-203ENST00000520755 FAM228BP0C875 321 aa16.18■□□□□ 0.18
LSM1-203ENST00000520755 FAM200BP0CF97 657 aa16.18■□□□□ 0.18
LSM1-203ENST00000520755 CDH5P33151 784 aaPredicted RBP16.18■□□□□ 0.18
LSM1-203ENST00000520755 NTHL1P78549 312 aa16.18■□□□□ 0.18
LSM1-203ENST00000520755 CBX2Q14781 532 aaPredicted RBP16.18■□□□□ 0.18
LSM1-203ENST00000520755 STILQ15468 1287 aa16.18■□□□□ 0.18
LSM1-203ENST00000520755 TAF12Q16514 161 aa16.18■□□□□ 0.18
LSM1-203ENST00000520755 TSR1Q2NL82 804 aaKnown RBP16.18■□□□□ 0.18
LSM1-203ENST00000520755 CYP26C1Q6V0L0 522 aa16.18■□□□□ 0.18
LSM1-203ENST00000520755 CLEC20AQ6ZU45 233 aa16.18■□□□□ 0.18
LSM1-203ENST00000520755 ITIH5Q86UX2 942 aa16.18■□□□□ 0.18
LSM1-203ENST00000520755 C1orf131Q8NDD1 294 aaKnown RBP16.18■□□□□ 0.18
LSM1-203ENST00000520755 UBA3Q8TBC4 463 aa16.18■□□□□ 0.18
LSM1-203ENST00000520755 SUSD6Q92537 303 aa16.18■□□□□ 0.18
LSM1-203ENST00000520755 KCNK16Q96T55 309 aa16.18■□□□□ 0.18
LSM1-203ENST00000520755 SMOQ99835 787 aa16.18■□□□□ 0.18
LSM1-203ENST00000520755 TAS2R14Q9NYV8 317 aa16.18■□□□□ 0.18
LSM1-203ENST00000520755 DNMT3BQ9UBC3 853 aaKnown RBP16.18■□□□□ 0.18
LSM1-203ENST00000520755 PTMAP06454 111 aaKnown RBP16.17■□□□□ 0.18
LSM1-203ENST00000520755 UNGP13051 313 aaPredicted RBP16.17■□□□□ 0.18
LSM1-203ENST00000520755 IL9P15248 144 aa16.17■□□□□ 0.18
LSM1-203ENST00000520755 NPR3P17342 541 aa16.17■□□□□ 0.18
LSM1-203ENST00000520755 PTPN2P17706 415 aa16.17■□□□□ 0.18
LSM1-203ENST00000520755 GPD2P43304 727 aa16.17■□□□□ 0.18
LSM1-203ENST00000520755 KIF11P52732 1056 aa16.17■□□□□ 0.18
LSM1-203ENST00000520755 BCAT1P54687 386 aa16.17■□□□□ 0.18
LSM1-203ENST00000520755 MAP3K7CLP57077 242 aa16.17■□□□□ 0.18
LSM1-203ENST00000520755 MRPS5P82675 430 aaKnown RBP16.17■□□□□ 0.18
LSM1-203ENST00000520755 PDE4CQ08493 712 aa16.17■□□□□ 0.18
LSM1-203ENST00000520755 CLEC16AQ2KHT3 1053 aa16.17■□□□□ 0.18
LSM1-203ENST00000520755 PUS10Q3MIT2 529 aaKnown RBP16.17■□□□□ 0.18
LSM1-203ENST00000520755 DNAJB7Q7Z6W7 309 aaPredicted RBP16.17■□□□□ 0.18
LSM1-203ENST00000520755 DNAAF5Q86Y56 855 aa16.17■□□□□ 0.18
LSM1-203ENST00000520755 TMTC1Q8IUR5 882 aa16.17■□□□□ 0.18
LSM1-203ENST00000520755 HS6ST3Q8IZP7 471 aa16.17■□□□□ 0.18
LSM1-203ENST00000520755 ANKRD52Q8NB46 1076 aa16.17■□□□□ 0.18
LSM1-203ENST00000520755 ATXN2LQ8WWM7 1075 aaKnown RBP16.17■□□□□ 0.18
LSM1-203ENST00000520755 SECISBP2LQ93073 1101 aaKnown RBP16.17■□□□□ 0.18
LSM1-203ENST00000520755 PSMG2Q969U7 264 aa16.17■□□□□ 0.18
LSM1-203ENST00000520755 C8orf48Q96LL4 319 aa16.17■□□□□ 0.18
LSM1-203ENST00000520755 ZNF830Q96NB3 372 aaPredicted RBP16.17■□□□□ 0.18
LSM1-203ENST00000520755 NECTIN4Q96NY8 510 aa16.17■□□□□ 0.18
LSM1-203ENST00000520755 DUSP16Q9BY84 665 aa16.17■□□□□ 0.18
LSM1-203ENST00000520755 LHX5Q9H2C1 402 aa16.17■□□□□ 0.18
LSM1-203ENST00000520755 POMKQ9H5K3 350 aa16.17■□□□□ 0.18
LSM1-203ENST00000520755 CSNK1G1Q9HCP0 422 aa16.17■□□□□ 0.18
LSM1-203ENST00000520755 DMAP1Q9NPF5 467 aaPredicted RBP16.17■□□□□ 0.18
LSM1-203ENST00000520755 SPTLC3Q9NUV7 552 aa16.17■□□□□ 0.18
LSM1-203ENST00000520755 ADAMTS1Q9UHI8 967 aa16.17■□□□□ 0.18
LSM1-203ENST00000520755 MAGED2Q9UNF1 606 aaPredicted RBP16.17■□□□□ 0.18
LSM1-203ENST00000520755 FAM50BQ9Y247 325 aa16.17■□□□□ 0.18
LSM1-203ENST00000520755 ASB3Q9Y575 518 aa16.17■□□□□ 0.18
LSM1-203ENST00000520755 CLUHO75153 1309 aa16.17■□□□□ 0.18
LSM1-203ENST00000520755 SLC38A8A6NNN8 435 aa16.16■□□□□ 0.18
LSM1-203ENST00000520755 HHLA1C9JL84 531 aa16.16■□□□□ 0.18
LSM1-203ENST00000520755 GABBR2O75899 941 aa16.16■□□□□ 0.18
LSM1-203ENST00000520755 RHOP08100 348 aa16.16■□□□□ 0.18
LSM1-203ENST00000520755 MYL4P12829 197 aa16.16■□□□□ 0.18
LSM1-203ENST00000520755 CENPCQ03188 943 aa16.16■□□□□ 0.18
LSM1-203ENST00000520755 GFPT1Q06210 699 aaPredicted RBP16.16■□□□□ 0.18
LSM1-203ENST00000520755 BST2Q10589 180 aaKnown RBP16.16■□□□□ 0.18
LSM1-203ENST00000520755 IFRD2Q12894 506 aaPredicted RBP16.16■□□□□ 0.18
LSM1-203ENST00000520755 MTMR3Q13615 1198 aa16.16■□□□□ 0.18
LSM1-203ENST00000520755 SMAD2Q15796 467 aaKnown RBP16.16■□□□□ 0.18
LSM1-203ENST00000520755 SLC18A3Q16572 532 aa16.16■□□□□ 0.18
LSM1-203ENST00000520755 PABPC1LQ4VXU2 614 aaKnown RBP16.16■□□□□ 0.18
LSM1-203ENST00000520755 NAA35Q5VZE5 725 aa16.16■□□□□ 0.18
LSM1-203ENST00000520755 CCDC112Q8NEF3 446 aa16.16■□□□□ 0.18
LSM1-203ENST00000520755 SLC35F5Q8WV83 523 aa16.16■□□□□ 0.18
LSM1-203ENST00000520755 WDR6Q9NNW5 1121 aaKnown RBP16.16■□□□□ 0.18
LSM1-203ENST00000520755 ASAH2Q9NR71 780 aa16.16■□□□□ 0.18
LSM1-203ENST00000520755 SEPT11Q9NVA2 429 aaKnown RBP16.16■□□□□ 0.18
LSM1-203ENST00000520755 HESX1Q9UBX0 185 aa16.16■□□□□ 0.18
LSM1-203ENST00000520755 TJP2Q9UDY2 1190 aa16.16■□□□□ 0.18
LSM1-203ENST00000520755 REXO2Q9Y3B8 237 aaKnown RBP16.16■□□□□ 0.18
LSM1-203ENST00000520755 LCA5LO95447 670 aa16.15■□□□□ 0.18
LSM1-203ENST00000520755 LSM8O95777 96 aaKnown RBP16.15■□□□□ 0.18
LSM1-203ENST00000520755 SETSIPP0DME0 302 aa16.15■□□□□ 0.18
LSM1-203ENST00000520755 CSH1P0DML2 217 aa16.15■□□□□ 0.18
LSM1-203ENST00000520755 CSH2P0DML3 217 aa16.15■□□□□ 0.18
LSM1-203ENST00000520755 TNFAIP3P21580 790 aa16.15■□□□□ 0.18
LSM1-203ENST00000520755 SP100P23497 879 aaPredicted RBP16.15■□□□□ 0.18
LSM1-203ENST00000520755 FSHRP23945 695 aa16.15■□□□□ 0.18
LSM1-203ENST00000520755 PLA2G4AP47712 749 aa16.15■□□□□ 0.18
LSM1-203ENST00000520755 PDCLQ13371 301 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms