RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 SLC26A4O43511 780 aa9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 ATP9BO43861 1147 aa9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 IGKV5-2P06315 115 aa9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 PTPN4P29074 926 aa9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 ZSWIM7Q19AV6 140 aa9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 AARS2Q5JTZ9 985 aaKnown RBP9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 PGBD2Q6P3X8 592 aa9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 DSTYKQ6XUX3 929 aa9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 CATSPER4Q7RTX7 472 aa9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 REXO1L1PQ8IX06 675 aa9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 ADSSL1Q8N142 457 aa9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 PDCD6IPQ8WUM4 868 aaKnown RBP9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 RFT1Q96AA3 541 aa9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 ZNF184Q99676 751 aaPredicted RBP9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 GCOM2Q9BZD3 368 aaPredicted RBP9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 SLC7A5P2Q9GIP4 190 aa9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 RBMX2Q9Y388 322 aaKnown RBP9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 SSU72P8A0A1W2PR75 194 aa9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 TBC1D12O60347 775 aa9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 PHF2O75151 1096 aa9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 EPN2O95208 641 aa9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 APRTP07741 180 aa9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 ALOX15P16050 662 aaPredicted RBP9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 ITGA1P56199 1179 aa9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 ADAM17P78536 824 aa9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 ZNF699Q32M78 642 aa9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 TKFCQ3LXA3 575 aa9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 C5orf22Q49AR2 442 aa9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 MZT2BQ6NZ67 158 aa9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 MARK2Q7KZI7 788 aaKnown RBP9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 FAM9CQ8IZT9 166 aa9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 PCSK9Q8NBP7 692 aaKnown RBP9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 GRPEL2Q8TAA5 225 aa9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 STK32AQ8WU08 396 aa9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 KCTD4Q8WVF5 259 aa9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 RHOBTB2Q9BYZ6 727 aa9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 ENTPD7Q9NQZ7 604 aa9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 L1RE1Q9UN81 338 aa9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 NEU2Q9Y3R4 380 aa9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 H3BQF6 201 aa9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 APOL1O14791 398 aa9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 HOXA2O43364 376 aa9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 ITIH2P19823 946 aa9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 FLT3P36888 993 aa9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 HSD17B3P37058 310 aa9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 NOGQ13253 232 aa9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 KRT33BQ14525 404 aa9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 CRELD2Q6UXH1 353 aaPredicted RBP9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 DEFB132Q7Z7B7 95 aa9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 CCDC33Q8N5R6 958 aa9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 WDR36Q8NI36 951 aaKnown RBP9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 DHX35Q9H5Z1 703 aaKnown RBP9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 PFDN2Q9UHV9 154 aa9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 TRMT6Q9UJA5 497 aaKnown RBP9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 FEM1BQ9UK73 627 aa9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 UBOX5O94941 541 aa9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 SLC25A27O95847 323 aa9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 CALB2P22676 271 aa9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 KLRC1P26715 233 aa9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 STARP49675 285 aa9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 OVGP1Q12889 678 aa9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 STX5Q13190 355 aa9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 LLGL2Q6P1M3 1020 aa9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 ERICH5Q6P6B1 374 aa9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 TXNDC11Q6PKC3 985 aa9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 LRRC74BQ6ZQY2 392 aa9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 MINDY2Q8NBR6 621 aa9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 RORBQ92753 470 aa9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 TUBE1Q9UJT0 475 aa9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 VAV3Q9UKW4 847 aa9.03□□□□□ -0.96
LIMCH1-218ENST00000513024 DGKIO75912 1065 aa9.02□□□□□ -0.96
LIMCH1-218ENST00000513024 PRDX5P30044 214 aa9.02□□□□□ -0.96
LIMCH1-218ENST00000513024 CASP4P49662 377 aa9.02□□□□□ -0.96
LIMCH1-218ENST00000513024 KLK7P49862 253 aa9.02□□□□□ -0.96
LIMCH1-218ENST00000513024 EIF3EP60228 445 aaKnown RBP9.02□□□□□ -0.96
LIMCH1-218ENST00000513024 PID1Q7Z2X4 250 aa9.02□□□□□ -0.96
LIMCH1-218ENST00000513024 SVOPQ8N4V2 548 aa9.02□□□□□ -0.96
LIMCH1-218ENST00000513024 USP38Q8NB14 1042 aa9.02□□□□□ -0.96
LIMCH1-218ENST00000513024 PIGBQ92521 554 aa9.02□□□□□ -0.96
LIMCH1-218ENST00000513024 ZC3H10Q96K80 434 aaKnown RBP9.02□□□□□ -0.96
LIMCH1-218ENST00000513024 ERP44Q9BS26 406 aa9.02□□□□□ -0.96
LIMCH1-218ENST00000513024 ELP3Q9H9T3 547 aa9.02□□□□□ -0.96
LIMCH1-218ENST00000513024 RRAGCQ9HB90 399 aa9.02□□□□□ -0.96
LIMCH1-218ENST00000513024 DYRK4Q9NR20 520 aa9.02□□□□□ -0.96
LIMCH1-218ENST00000513024 FKBP14Q9NWM8 211 aa9.02□□□□□ -0.96
LIMCH1-218ENST00000513024 E2F8A0AVK6 867 aa9.02□□□□□ -0.97
LIMCH1-218ENST00000513024 A8MXQ7 604 aa9.02□□□□□ -0.97
LIMCH1-218ENST00000513024 M0QYV0 167 aa9.02□□□□□ -0.97
LIMCH1-218ENST00000513024 ZBTB5O15062 677 aa9.02□□□□□ -0.97
LIMCH1-218ENST00000513024 ATF6P18850 670 aa9.02□□□□□ -0.97
LIMCH1-218ENST00000513024 CRKP46108 304 aa9.02□□□□□ -0.97
LIMCH1-218ENST00000513024 C2CD6Q53TS8 623 aa9.02□□□□□ -0.97
LIMCH1-218ENST00000513024 EFHC1Q5JVL4 640 aa9.02□□□□□ -0.97
LIMCH1-218ENST00000513024 FAM102AQ5T9C2 384 aaPredicted RBP9.02□□□□□ -0.97
LIMCH1-218ENST00000513024 BTBD8Q5XKL5 378 aa9.02□□□□□ -0.97
LIMCH1-218ENST00000513024 MMGT1Q8N4V1 131 aa9.02□□□□□ -0.97
LIMCH1-218ENST00000513024 LRRC17Q8N6Y2 441 aa9.02□□□□□ -0.97
LIMCH1-218ENST00000513024 BORCS5Q969J3 196 aa9.02□□□□□ -0.97
LIMCH1-218ENST00000513024 CCSER1Q9C0I3 900 aa9.02□□□□□ -0.97
LIMCH1-218ENST00000513024 ISCUQ9H1K1 167 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms