RNA–Protein interactions for RNA: ENST00000511081.5

CLDND1-223, Transcript of claudin domain containing 1, human

TSL 2 BASIC

Gene CLDND1, Length 642 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLDND1-223	ENST00000511081	KCNK16	Q96T55	309 aa		12.9	□□□□□ -0.34
CLDND1-223	ENST00000511081	FAM126A	Q9BYI3	521 aa	Predicted RBP	12.9	□□□□□ -0.34
CLDND1-223	ENST00000511081	APOBEC3G	Q9HC16	384 aa	Known RBP	12.9	□□□□□ -0.34
CLDND1-223	ENST00000511081	TMEM8A	Q9HCN3	771 aa		12.9	□□□□□ -0.34
CLDND1-223	ENST00000511081	COMMD8	Q9NX08	183 aa		12.9	□□□□□ -0.34
CLDND1-223	ENST00000511081	TRPM5	Q9NZQ8	1165 aa		12.9	□□□□□ -0.34
CLDND1-223	ENST00000511081	ARHGAP26	Q9UNA1	814 aa		12.9	□□□□□ -0.34
CLDND1-223	ENST00000511081		R4GN57	208 aa		12.9	□□□□□ -0.34
CLDND1-223	ENST00000511081	GPR179	Q6PRD1	2367 aa		12.89	□□□□□ -0.35
CLDND1-223	ENST00000511081	TRDMT1	O14717	391 aa	Known RBP	12.89	□□□□□ -0.35
CLDND1-223	ENST00000511081	CETN3	O15182	167 aa		12.89	□□□□□ -0.35
CLDND1-223	ENST00000511081	RTN3	O95197	1032 aa	Predicted RBP	12.89	□□□□□ -0.35
CLDND1-223	ENST00000511081	PAPSS2	O95340	614 aa	Predicted RBP	12.89	□□□□□ -0.35
CLDND1-223	ENST00000511081	SMC2	O95347	1197 aa		12.89	□□□□□ -0.35
CLDND1-223	ENST00000511081	OAS1	P00973	400 aa	Known RBP	12.89	□□□□□ -0.35
CLDND1-223	ENST00000511081	ZDHHC11B	P0C7U3	371 aa		12.89	□□□□□ -0.35
CLDND1-223	ENST00000511081	TRIM49	P0CI25	452 aa		12.89	□□□□□ -0.35
CLDND1-223	ENST00000511081	TRIM49C	P0CI26	452 aa		12.89	□□□□□ -0.35
CLDND1-223	ENST00000511081	PDE6C	P51160	858 aa		12.89	□□□□□ -0.35
CLDND1-223	ENST00000511081	NDST1	P52848	882 aa		12.89	□□□□□ -0.35
CLDND1-223	ENST00000511081	SLC7A9	P82251	487 aa		12.89	□□□□□ -0.35
CLDND1-223	ENST00000511081	FKBP3	Q00688	224 aa	Known RBP	12.89	□□□□□ -0.35
CLDND1-223	ENST00000511081	TAF10	Q12962	218 aa		12.89	□□□□□ -0.35
CLDND1-223	ENST00000511081	USP4	Q13107	963 aa		12.89	□□□□□ -0.35
CLDND1-223	ENST00000511081	KRT39	Q6A163	491 aa		12.89	□□□□□ -0.35
CLDND1-223	ENST00000511081	ANKRD40	Q6AI12	368 aa		12.89	□□□□□ -0.35
CLDND1-223	ENST00000511081	FOXR2	Q6PJQ5	311 aa		12.89	□□□□□ -0.35
CLDND1-223	ENST00000511081	ACOT1	Q86TX2	421 aa		12.89	□□□□□ -0.35
CLDND1-223	ENST00000511081	FAM35A	Q86V20	835 aa		12.89	□□□□□ -0.35
CLDND1-223	ENST00000511081	SPEM1	Q8N4L4	309 aa		12.89	□□□□□ -0.35
CLDND1-223	ENST00000511081	SUMF1	Q8NBK3	374 aa		12.89	□□□□□ -0.35
CLDND1-223	ENST00000511081	ZMIZ2	Q8NF64	920 aa		12.89	□□□□□ -0.35
CLDND1-223	ENST00000511081	WHAMM	Q8TF30	809 aa		12.89	□□□□□ -0.35
CLDND1-223	ENST00000511081	OVCA2	Q8WZ82	227 aa		12.89	□□□□□ -0.35
CLDND1-223	ENST00000511081	SMARCE1	Q969G3	411 aa		12.89	□□□□□ -0.35
CLDND1-223	ENST00000511081	RNF38	Q9H0F5	515 aa		12.89	□□□□□ -0.35
CLDND1-223	ENST00000511081	CIZ1	Q9ULV3	898 aa	Predicted RBP	12.89	□□□□□ -0.35
CLDND1-223	ENST00000511081	COQ4	Q9Y3A0	265 aa		12.89	□□□□□ -0.35
CLDND1-223	ENST00000511081	PCDHGA2	Q9Y5H1	932 aa		12.89	□□□□□ -0.35
CLDND1-223	ENST00000511081	DCHS1	Q96JQ0	3298 aa		12.89	□□□□□ -0.35
CLDND1-223	ENST00000511081	LMNA	P02545	664 aa	Known RBP	12.88	□□□□□ -0.35
CLDND1-223	ENST00000511081	CKM	P06732	381 aa		12.88	□□□□□ -0.35
CLDND1-223	ENST00000511081	YWHAQ	P27348	245 aa		12.88	□□□□□ -0.35
CLDND1-223	ENST00000511081	PIK3CA	P42336	1068 aa		12.88	□□□□□ -0.35
CLDND1-223	ENST00000511081	PMS1	P54277	932 aa	Known RBP	12.88	□□□□□ -0.35
CLDND1-223	ENST00000511081	CSTF1	Q05048	431 aa	Known RBP	12.88	□□□□□ -0.35
CLDND1-223	ENST00000511081	LRRC63	Q05C16	580 aa		12.88	□□□□□ -0.35
CLDND1-223	ENST00000511081	LRRC32	Q14392	662 aa		12.88	□□□□□ -0.35
CLDND1-223	ENST00000511081	MTF1	Q14872	753 aa		12.88	□□□□□ -0.35
CLDND1-223	ENST00000511081	EML3	Q32P44	896 aa		12.88	□□□□□ -0.35
CLDND1-223	ENST00000511081	TMEM196	Q5HYL7	178 aa		12.88	□□□□□ -0.35
CLDND1-223	ENST00000511081	TRIM68	Q6AZZ1	485 aa		12.88	□□□□□ -0.35
CLDND1-223	ENST00000511081	ZC3H14	Q6PJT7	736 aa	Known RBP	12.88	□□□□□ -0.35
CLDND1-223	ENST00000511081	SCARA5	Q6ZMJ2	495 aa		12.88	□□□□□ -0.35
CLDND1-223	ENST00000511081	TTC8	Q8TAM2	541 aa		12.88	□□□□□ -0.35
CLDND1-223	ENST00000511081	OSCP1	Q8WVF1	389 aa		12.88	□□□□□ -0.35
CLDND1-223	ENST00000511081	SEMA4D	Q92854	862 aa		12.88	□□□□□ -0.35
CLDND1-223	ENST00000511081	EEF2KMT	Q96G04	330 aa		12.88	□□□□□ -0.35
CLDND1-223	ENST00000511081	HNRNPAB	Q99729	332 aa	Known RBP	12.88	□□□□□ -0.35
CLDND1-223	ENST00000511081	SMO	Q99835	787 aa		12.88	□□□□□ -0.35
CLDND1-223	ENST00000511081	EBF3	Q9H4W6	596 aa		12.88	□□□□□ -0.35
CLDND1-223	ENST00000511081	FAM124B	Q9H5Z6	455 aa	Predicted RBP	12.88	□□□□□ -0.35
CLDND1-223	ENST00000511081	TRPC7	Q9HCX4	862 aa		12.88	□□□□□ -0.35
CLDND1-223	ENST00000511081	ZSCAN32	Q9NX65	697 aa		12.88	□□□□□ -0.35
CLDND1-223	ENST00000511081	HMGXB4	Q9UGU5	601 aa		12.88	□□□□□ -0.35
CLDND1-223	ENST00000511081	HOOK1	Q9UJC3	728 aa	Known RBP	12.88	□□□□□ -0.35
CLDND1-223	ENST00000511081	ATP8B3	O60423	1300 aa		12.88	□□□□□ -0.35
CLDND1-223	ENST00000511081	SLC16A3	O15427	465 aa	Known RBP	12.87	□□□□□ -0.35
CLDND1-223	ENST00000511081	STX10	O60499	249 aa		12.87	□□□□□ -0.35
CLDND1-223	ENST00000511081	GADD45B	O75293	160 aa	Predicted RBP	12.87	□□□□□ -0.35
CLDND1-223	ENST00000511081	CILP	O75339	1184 aa		12.87	□□□□□ -0.35
CLDND1-223	ENST00000511081	ARSA	P15289	507 aa		12.87	□□□□□ -0.35
CLDND1-223	ENST00000511081	BMP6	P22004	513 aa		12.87	□□□□□ -0.35
CLDND1-223	ENST00000511081	HOXA6	P31267	233 aa		12.87	□□□□□ -0.35
CLDND1-223	ENST00000511081	GJA4	P35212	333 aa		12.87	□□□□□ -0.35
CLDND1-223	ENST00000511081	CXCL12	P48061	93 aa		12.87	□□□□□ -0.35
CLDND1-223	ENST00000511081	CCR3	P51677	355 aa		12.87	□□□□□ -0.35
CLDND1-223	ENST00000511081	AMPD2	Q01433	879 aa		12.87	□□□□□ -0.35
CLDND1-223	ENST00000511081	PON2	Q15165	354 aa		12.87	□□□□□ -0.35
CLDND1-223	ENST00000511081	CC2D1A	Q6P1N0	951 aa	Predicted RBP	12.87	□□□□□ -0.35
CLDND1-223	ENST00000511081	ADGRG2	Q8IZP9	1017 aa		12.87	□□□□□ -0.35
CLDND1-223	ENST00000511081	C12orf29	Q8N999	325 aa		12.87	□□□□□ -0.35
CLDND1-223	ENST00000511081	FBXL13	Q8NEE6	735 aa		12.87	□□□□□ -0.35
CLDND1-223	ENST00000511081	PDZD8	Q8NEN9	1154 aa		12.87	□□□□□ -0.35
CLDND1-223	ENST00000511081	SCAMP5	Q8TAC9	235 aa		12.87	□□□□□ -0.35
CLDND1-223	ENST00000511081	SH3RF2	Q8TEC5	729 aa		12.87	□□□□□ -0.35
CLDND1-223	ENST00000511081	ERCC4	Q92889	916 aa	Predicted RBP	12.87	□□□□□ -0.35
CLDND1-223	ENST00000511081	SMARCD1	Q96GM5	515 aa		12.87	□□□□□ -0.35
CLDND1-223	ENST00000511081	DHTKD1	Q96HY7	919 aa	Predicted RBP	12.87	□□□□□ -0.35
CLDND1-223	ENST00000511081	SLITRK1	Q96PX8	696 aa		12.87	□□□□□ -0.35
CLDND1-223	ENST00000511081	TWNK	Q96RR1	684 aa		12.87	□□□□□ -0.35
CLDND1-223	ENST00000511081	DUSP9	Q99956	384 aa	Known RBP	12.87	□□□□□ -0.35
CLDND1-223	ENST00000511081	NT5C1A	Q9BXI3	368 aa		12.87	□□□□□ -0.35
CLDND1-223	ENST00000511081	IMPG2	Q9BZV3	1241 aa		12.87	□□□□□ -0.35
CLDND1-223	ENST00000511081	NIF3L1	Q9GZT8	377 aa		12.87	□□□□□ -0.35
CLDND1-223	ENST00000511081	LINC00597	Q9H2U6	94 aa		12.87	□□□□□ -0.35
CLDND1-223	ENST00000511081	ECT2	Q9H8V3	914 aa		12.87	□□□□□ -0.35
CLDND1-223	ENST00000511081	FBRSL1	Q9HCM7	1045 aa	Known RBP	12.87	□□□□□ -0.35
CLDND1-223	ENST00000511081	DMAP1	Q9NPF5	467 aa	Predicted RBP	12.87	□□□□□ -0.35
CLDND1-223	ENST00000511081	RBM12	Q9NTZ6	932 aa	Known RBP	12.87	□□□□□ -0.35

Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms