RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 SERHL2Q9H4I8 314 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 RNF41Q9H4P4 317 aaPredicted RBP5.35□□□□□ -1.55
USP54-216ENST00000498143 LTB4R2Q9NPC1 389 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 DMAP1Q9NPF5 467 aaPredicted RBP5.35□□□□□ -1.55
USP54-216ENST00000498143 GID8Q9NWU2 228 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 ERAP1Q9NZ08 941 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 PACSIN2Q9UNF0 486 aaPredicted RBP5.35□□□□□ -1.55
USP54-216ENST00000498143 EXOC7Q9UPT5 735 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 MYO9AB2RTY4 2548 aa5.35□□□□□ -1.55
USP54-216ENST00000498143 ABCA4P78363 2273 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 TRABD2BA6NFA1 517 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 AGRPO00253 132 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 GDF9O60383 454 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 ASS1P00966 412 aaKnown RBP5.34□□□□□ -1.55
USP54-216ENST00000498143 PDGFRBP09619 1106 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 THEGLP0DJG4 465 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 POU3F3P20264 500 aaPredicted RBP5.34□□□□□ -1.55
USP54-216ENST00000498143 WEE1P30291 646 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 ARRB1P49407 418 aaPredicted RBP5.34□□□□□ -1.55
USP54-216ENST00000498143 SERPINB8P50452 374 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 RALGDSQ12967 914 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 TRPC3Q13507 836 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 LRRC24Q50LG9 513 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 GPR139Q6DWJ6 353 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 C1orf94Q6P1W5 598 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 PDXDC2PQ6P474 469 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 KCTD1Q719H9 257 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 ZDHHC14Q8IZN3 488 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 IL22RA1Q8N6P7 574 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 ZNF713Q8N859 430 aaPredicted RBP5.34□□□□□ -1.55
USP54-216ENST00000498143 PARD3BQ8TEW8 1205 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 MRPS31Q92665 395 aaKnown RBP5.34□□□□□ -1.55
USP54-216ENST00000498143 PRPF18Q99633 342 aaKnown RBP5.34□□□□□ -1.55
USP54-216ENST00000498143 PLEKHA4Q9H4M7 779 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 CBX8Q9HC52 389 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 CHMP1AQ9HD42 196 aaPredicted RBP5.34□□□□□ -1.55
USP54-216ENST00000498143 SAMD15Q9P1V8 674 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 KIF17Q9P2E2 1029 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 C5P01031 1676 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 A8MXQ7 604 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 ZBTB39O15060 712 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 ZW10O43264 779 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 DKC1O60832 514 aaKnown RBP eCLIP5.34□□□□□ -1.55
USP54-216ENST00000498143 CER1O95813 267 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 MCF2P10911 925 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 IL32P24001 234 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 SOX11P35716 441 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 CASP6P55212 293 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 RAB14P61106 215 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 MRPS25P82663 173 aaKnown RBP5.34□□□□□ -1.55
USP54-216ENST00000498143 FOXO4P98177 505 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 SPAG1Q07617 926 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 GRM4Q14833 912 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 TMEM266Q2M3C6 531 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 PPP1R26Q5T8A7 1209 aaPredicted RBP5.34□□□□□ -1.55
USP54-216ENST00000498143 SFMBT2Q5VUG0 894 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 PHLDB3Q6NSJ2 640 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 PDXDC1Q6P996 788 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 SLC24A5Q71RS6 500 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 LURAP1LQ8IV03 231 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 CCDC13Q8IYE1 715 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 OR8H2Q8N162 312 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 TCAIMQ8N3R3 496 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 PDCD6IPQ8WUM4 868 aaKnown RBP5.34□□□□□ -1.55
USP54-216ENST00000498143 E2F7Q96AV8 911 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 TBATAQ96M53 351 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 HAPLN3Q96S86 360 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 ATXN3LQ9H3M9 355 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 FAM124BQ9H5Z6 455 aaPredicted RBP5.34□□□□□ -1.55
USP54-216ENST00000498143 TRPC7Q9HCX4 862 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 SLAMF7Q9NQ25 335 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 ASAH2Q9NR71 780 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 KLC4Q9NSK0 619 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 TBC1D23Q9NUY8 699 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 HACD3Q9P035 362 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 TMCO1Q9UM00 188 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 MYADML2A6NDP7 307 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 GOLGA8KD6RF30 607 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 PRDM1O75626 825 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 CALM1P0DP23 149 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 CALM2P0DP24 149 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 CALM3P0DP25 149 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 GARTP22102 1010 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 RECQLP46063 649 aaPredicted RBP5.34□□□□□ -1.55
USP54-216ENST00000498143 EPHB3P54753 998 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 ALDH18A1P54886 795 aaKnown RBP5.34□□□□□ -1.55
USP54-216ENST00000498143 ACTN3Q08043 901 aaPredicted RBP5.34□□□□□ -1.55
USP54-216ENST00000498143 SCRN1Q12765 414 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 TSTA3Q13630 321 aaPredicted RBP5.34□□□□□ -1.55
USP54-216ENST00000498143 SLC5A9Q2M3M2 681 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 TDRD12Q587J7 1177 aaKnown RBP5.34□□□□□ -1.55
USP54-216ENST00000498143 SYDE2Q5VT97 1194 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 CDR2LQ86X02 465 aaPredicted RBP5.34□□□□□ -1.55
USP54-216ENST00000498143 PJA1Q8NG27 643 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 GIMAP1Q8WWP7 306 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 POMGNT1Q8WZA1 660 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 MNTQ99583 582 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 OLFM1Q99784 485 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 DPH5Q9H2P9 285 aa5.34□□□□□ -1.55
USP54-216ENST00000498143 SMOC1Q9H4F8 434 aa5.34□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms