RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 TMEM191CA6NGB0 347 aa8.76□□□□□ -1.01
USP54-215ENST00000497106 PPP1R12AO14974 1030 aaPredicted RBP8.76□□□□□ -1.01
USP54-215ENST00000497106 NOS2P35228 1153 aa8.76□□□□□ -1.01
USP54-215ENST00000497106 GSCP56915 257 aaPredicted RBP8.76□□□□□ -1.01
USP54-215ENST00000497106 YWHAZP63104 245 aaKnown RBP8.76□□□□□ -1.01
USP54-215ENST00000497106 TLE2Q04725 743 aa8.76□□□□□ -1.01
USP54-215ENST00000497106 SEPT7Q16181 437 aaKnown RBP8.76□□□□□ -1.01
USP54-215ENST00000497106 USP41Q3LFD5 358 aa8.76□□□□□ -1.01
USP54-215ENST00000497106 ALS2CLQ60I27 953 aa8.76□□□□□ -1.01
USP54-215ENST00000497106 DENND2CQ68D51 928 aa8.76□□□□□ -1.01
USP54-215ENST00000497106 WDR93Q6P2C0 686 aa8.76□□□□□ -1.01
USP54-215ENST00000497106 NIPA2Q8N8Q9 360 aa8.76□□□□□ -1.01
USP54-215ENST00000497106 DBF4BQ8NFT6 615 aa8.76□□□□□ -1.01
USP54-215ENST00000497106 SPPL2BQ8TCT7 592 aa8.76□□□□□ -1.01
USP54-215ENST00000497106 TMEM40Q8WWA1 233 aa8.76□□□□□ -1.01
USP54-215ENST00000497106 FUBP3Q96I24 572 aaKnown RBP eCLIP8.76□□□□□ -1.01
USP54-215ENST00000497106 ZFP42Q96MM3 310 aa8.76□□□□□ -1.01
USP54-215ENST00000497106 POPDC2Q9HBU9 364 aa8.76□□□□□ -1.01
USP54-215ENST00000497106 MED4Q9NPJ6 270 aa8.76□□□□□ -1.01
USP54-215ENST00000497106 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP8.76□□□□□ -1.01
USP54-215ENST00000497106 PCSK1NQ9UHG2 260 aa8.76□□□□□ -1.01
USP54-215ENST00000497106 EFR3BQ9Y2G0 817 aa8.76□□□□□ -1.01
USP54-215ENST00000497106 E5RJQ4 531 aa8.76□□□□□ -1.01
USP54-215ENST00000497106 ZNF185O15231 689 aa8.76□□□□□ -1.01
USP54-215ENST00000497106 MTSS1O43312 755 aa8.76□□□□□ -1.01
USP54-215ENST00000497106 SRGAP2BP0DMP2 458 aa8.76□□□□□ -1.01
USP54-215ENST00000497106 CCDC130P13994 396 aa8.76□□□□□ -1.01
USP54-215ENST00000497106 MAP3K7CLP57077 242 aa8.76□□□□□ -1.01
USP54-215ENST00000497106 ROR1Q01973 937 aa8.76□□□□□ -1.01
USP54-215ENST00000497106 ZBTB6Q15916 424 aa8.76□□□□□ -1.01
USP54-215ENST00000497106 SOWAHAQ2M3V2 549 aa8.76□□□□□ -1.01
USP54-215ENST00000497106 ITIH5Q86UX2 942 aa8.76□□□□□ -1.01
USP54-215ENST00000497106 RASGEF1CQ8N431 466 aa8.76□□□□□ -1.01
USP54-215ENST00000497106 UBR7Q8N806 425 aa8.76□□□□□ -1.01
USP54-215ENST00000497106 PPP2R3CQ969Q6 453 aa8.76□□□□□ -1.01
USP54-215ENST00000497106 TRIM31Q9BZY9 425 aa8.76□□□□□ -1.01
USP54-215ENST00000497106 DHX35Q9H5Z1 703 aaKnown RBP8.76□□□□□ -1.01
USP54-215ENST00000497106 USP18Q9UMW8 372 aa8.76□□□□□ -1.01
USP54-215ENST00000497106 BAIAP3O94812 1187 aa8.76□□□□□ -1.01
USP54-215ENST00000497106 MX2P20592 715 aa8.76□□□□□ -1.01
USP54-215ENST00000497106 TGM2P21980 687 aa8.76□□□□□ -1.01
USP54-215ENST00000497106 PLA2G4AP47712 749 aa8.76□□□□□ -1.01
USP54-215ENST00000497106 ALDH1A3P47895 512 aa8.76□□□□□ -1.01
USP54-215ENST00000497106 CLCNKBP51801 687 aa8.76□□□□□ -1.01
USP54-215ENST00000497106 CCL23P55773 120 aa8.76□□□□□ -1.01
USP54-215ENST00000497106 EIF3BP55884 814 aaKnown RBP8.76□□□□□ -1.01
USP54-215ENST00000497106 ATP11AP98196 1134 aa8.76□□□□□ -1.01
USP54-215ENST00000497106 PPP1R26Q5T8A7 1209 aaPredicted RBP8.76□□□□□ -1.01
USP54-215ENST00000497106 ALKAL1Q6UXT8 129 aa8.76□□□□□ -1.01
USP54-215ENST00000497106 ADAT2Q7Z6V5 191 aaKnown RBP8.76□□□□□ -1.01
USP54-215ENST00000497106 PDZD8Q8NEN9 1154 aa8.76□□□□□ -1.01
USP54-215ENST00000497106 FAM172AQ8WUF8 416 aa8.76□□□□□ -1.01
USP54-215ENST00000497106 HNRNPLLQ8WVV9 542 aaKnown RBP8.76□□□□□ -1.01
USP54-215ENST00000497106 ABI2Q9NYB9 513 aaPredicted RBP8.76□□□□□ -1.01
USP54-215ENST00000497106 UXTQ9UBK9 157 aaPredicted RBP8.76□□□□□ -1.01
USP54-215ENST00000497106 ANAPC5Q9UJX4 755 aa8.76□□□□□ -1.01
USP54-215ENST00000497106 ADAM28Q9UKQ2 775 aa8.76□□□□□ -1.01
USP54-215ENST00000497106 SYNJ2BP-COX16A0A087WUM0 186 aa8.75□□□□□ -1.01
USP54-215ENST00000497106 IFNB1P01574 187 aa8.75□□□□□ -1.01
USP54-215ENST00000497106 DSC3Q14574 896 aa8.75□□□□□ -1.01
USP54-215ENST00000497106 CCNG2Q16589 344 aa8.75□□□□□ -1.01
USP54-215ENST00000497106 PSRC1Q6PGN9 363 aaPredicted RBP8.75□□□□□ -1.01
USP54-215ENST00000497106 SPOCD1Q6ZMY3 1216 aa8.75□□□□□ -1.01
USP54-215ENST00000497106 SLC26A9Q7LBE3 791 aa8.75□□□□□ -1.01
USP54-215ENST00000497106 XYLT1Q86Y38 959 aa8.75□□□□□ -1.01
USP54-215ENST00000497106 PSTKQ8IV42 348 aaKnown RBP8.75□□□□□ -1.01
USP54-215ENST00000497106 TEKT4Q8WW24 435 aa8.75□□□□□ -1.01
USP54-215ENST00000497106 KCTD13Q8WZ19 329 aa8.75□□□□□ -1.01
USP54-215ENST00000497106 MYLPFQ96A32 169 aa8.75□□□□□ -1.01
USP54-215ENST00000497106 SNF8Q96H20 258 aa8.75□□□□□ -1.01
USP54-215ENST00000497106 FMO2Q99518 471 aa8.75□□□□□ -1.01
USP54-215ENST00000497106 DPH5Q9H2P9 285 aa8.75□□□□□ -1.01
USP54-215ENST00000497106 CENPHQ9H3R5 247 aa8.75□□□□□ -1.01
USP54-215ENST00000497106 COX16Q9P0S2 106 aa8.75□□□□□ -1.01
USP54-215ENST00000497106 FAM170AA1A519 330 aa8.75□□□□□ -1.01
USP54-215ENST00000497106 TMEM189-UBE2V1I3L0A0 370 aa8.75□□□□□ -1.01
USP54-215ENST00000497106 MGAT5BQ3V5L5 792 aa8.75□□□□□ -1.01
USP54-215ENST00000497106 PTPN20Q4JDL3 420 aa8.75□□□□□ -1.01
USP54-215ENST00000497106 DCAF6Q58WW2 860 aa8.75□□□□□ -1.01
USP54-215ENST00000497106 FAM183BPQ6ZVS7 135 aa8.75□□□□□ -1.01
USP54-215ENST00000497106 ZNF572Q7Z3I7 529 aaPredicted RBP8.75□□□□□ -1.01
USP54-215ENST00000497106 CREG2Q8IUH2 290 aa8.75□□□□□ -1.01
USP54-215ENST00000497106 SLC43A3Q8NBI5 491 aa8.75□□□□□ -1.01
USP54-215ENST00000497106 SYT11Q9BT88 431 aa8.75□□□□□ -1.01
USP54-215ENST00000497106 FRMD8Q9BZ67 464 aaPredicted RBP8.75□□□□□ -1.01
USP54-215ENST00000497106 RNF39Q9H2S5 420 aa8.75□□□□□ -1.01
USP54-215ENST00000497106 ABCC13Q9NSE7 274 aa8.75□□□□□ -1.01
USP54-215ENST00000497106 RBM12Q9NTZ6 932 aaKnown RBP8.75□□□□□ -1.01
USP54-215ENST00000497106 PLXNA1Q9UIW2 1896 aa8.75□□□□□ -1.01
USP54-215ENST00000497106 GOLGA8KD6RF30 607 aa8.75□□□□□ -1.01
USP54-215ENST00000497106 DPYSL4O14531 572 aa8.75□□□□□ -1.01
USP54-215ENST00000497106 COILP38432 576 aaPredicted RBP8.75□□□□□ -1.01
USP54-215ENST00000497106 PTPN9P43378 593 aa8.75□□□□□ -1.01
USP54-215ENST00000497106 TPI1P60174 286 aa8.75□□□□□ -1.01
USP54-215ENST00000497106 ADIGQ0VDE8 80 aa8.75□□□□□ -1.01
USP54-215ENST00000497106 TAOK1Q7L7X3 1001 aa8.75□□□□□ -1.01
USP54-215ENST00000497106 STRADAQ7RTN6 431 aa8.75□□□□□ -1.01
USP54-215ENST00000497106 ATP6V0D2Q8N8Y2 350 aa8.75□□□□□ -1.01
USP54-215ENST00000497106 MCRS1Q96EZ8 462 aa8.75□□□□□ -1.01
USP54-215ENST00000497106 KLC2Q9H0B6 622 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms