RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 SIRT6Q8N6T7 355 aa4.25□□□□□ -1.73
SMC4-220ENST00000488017 CAMK1GQ96NX5 476 aa4.25□□□□□ -1.73
SMC4-220ENST00000488017 PLEKHM1Q9Y4G2 1056 aa4.25□□□□□ -1.73
SMC4-220ENST00000488017 LACTBL1A8MY62 500 aa4.24□□□□□ -1.73
SMC4-220ENST00000488017 AHSGP02765 367 aa4.24□□□□□ -1.73
SMC4-220ENST00000488017 HSD3B2P26439 372 aa4.24□□□□□ -1.73
SMC4-220ENST00000488017 TMTC4Q5T4D3 741 aa4.24□□□□□ -1.73
SMC4-220ENST00000488017 DEPDC1Q5TB30 811 aa4.24□□□□□ -1.73
SMC4-220ENST00000488017 NECAB2Q7Z6G3 386 aa4.24□□□□□ -1.73
SMC4-220ENST00000488017 UBE2Q1Q7Z7E8 422 aa4.24□□□□□ -1.73
SMC4-220ENST00000488017 ABRAQ8N0Z2 381 aa4.24□□□□□ -1.73
SMC4-220ENST00000488017 PRR25Q96S07 402 aa4.24□□□□□ -1.73
SMC4-220ENST00000488017 MLXIPQ9HAP2 919 aa4.24□□□□□ -1.73
SMC4-220ENST00000488017 TRMT13Q9NUP7 481 aaKnown RBP4.24□□□□□ -1.73
SMC4-220ENST00000488017 SLC5A4Q9NY91 659 aa4.24□□□□□ -1.73
SMC4-220ENST00000488017 TYRP14679 529 aa4.23□□□□□ -1.73
SMC4-220ENST00000488017 MYO1EQ12965 1108 aa4.23□□□□□ -1.73
SMC4-220ENST00000488017 ZNF585BQ52M93 769 aa4.23□□□□□ -1.73
SMC4-220ENST00000488017 GSG1LQ6UXU4 331 aa4.23□□□□□ -1.73
SMC4-220ENST00000488017 IZUMO1Q8IYV9 350 aa4.23□□□□□ -1.73
SMC4-220ENST00000488017 MMP21Q8N119 569 aa4.23□□□□□ -1.73
SMC4-220ENST00000488017 ZPBPQ9BS86 351 aa4.23□□□□□ -1.73
SMC4-220ENST00000488017 ZBTB40Q9NUA8 1239 aa4.23□□□□□ -1.73
SMC4-220ENST00000488017 MAFFQ9ULX9 164 aa4.23□□□□□ -1.73
SMC4-220ENST00000488017 hCG_1984214I3L0E3 225 aa4.22□□□□□ -1.73
SMC4-220ENST00000488017 SLC28A2O43868 658 aa4.22□□□□□ -1.73
SMC4-220ENST00000488017 UNC5CO95185 931 aa4.22□□□□□ -1.73
SMC4-220ENST00000488017 CYP2C9P11712 490 aa4.22□□□□□ -1.73
SMC4-220ENST00000488017 ZXDBP98169 803 aa4.22□□□□□ -1.73
SMC4-220ENST00000488017 PSG6Q00889 435 aa4.22□□□□□ -1.73
SMC4-220ENST00000488017 EXOSC9Q06265 439 aaKnown RBP4.22□□□□□ -1.73
SMC4-220ENST00000488017 LARS2Q15031 903 aaKnown RBP4.22□□□□□ -1.73
SMC4-220ENST00000488017 DGKKQ5KSL6 1271 aa4.22□□□□□ -1.73
SMC4-220ENST00000488017 BRIX1Q8TDN6 353 aaKnown RBP4.22□□□□□ -1.73
SMC4-220ENST00000488017 LMBRD1Q9NUN5 540 aa4.22□□□□□ -1.73
SMC4-220ENST00000488017 SELENONQ9NZV5 590 aa4.22□□□□□ -1.73
SMC4-220ENST00000488017 MCM8Q9UJA3 840 aa4.22□□□□□ -1.73
SMC4-220ENST00000488017 MRPS17Q9Y2R5 130 aaKnown RBP4.22□□□□□ -1.73
SMC4-220ENST00000488017 NOTCH4Q99466 2003 aa4.22□□□□□ -1.73
SMC4-220ENST00000488017 SHTN1A0MZ66 631 aa4.21□□□□□ -1.74
SMC4-220ENST00000488017 M0R3H8 397 aa4.21□□□□□ -1.74
SMC4-220ENST00000488017 GRPP07492 148 aa4.21□□□□□ -1.74
SMC4-220ENST00000488017 MYBL2P10244 700 aa4.21□□□□□ -1.74
SMC4-220ENST00000488017 ADORA2AP29274 412 aa4.21□□□□□ -1.74
SMC4-220ENST00000488017 SUMO2P61956 95 aaKnown RBP4.21□□□□□ -1.74
SMC4-220ENST00000488017 FHL3Q13643 280 aa4.21□□□□□ -1.74
SMC4-220ENST00000488017 SYDE2Q5VT97 1194 aa4.21□□□□□ -1.74
SMC4-220ENST00000488017 EFCAB2Q5VUJ9 269 aa4.21□□□□□ -1.74
SMC4-220ENST00000488017 TMEM65Q6PI78 240 aa4.21□□□□□ -1.74
SMC4-220ENST00000488017 DPY19L3Q6ZPD9 716 aa4.21□□□□□ -1.74
SMC4-220ENST00000488017 TMEM204Q9BSN7 226 aa4.21□□□□□ -1.74
SMC4-220ENST00000488017 CXorf36Q9H7Y0 433 aa4.21□□□□□ -1.74
SMC4-220ENST00000488017 PNPOQ9NVS9 261 aa4.21□□□□□ -1.74
SMC4-220ENST00000488017 GAR1Q9NY12 217 aaKnown RBP4.21□□□□□ -1.74
SMC4-220ENST00000488017 XPR1Q9UBH6 696 aa4.21□□□□□ -1.74
SMC4-220ENST00000488017 ZSCAN21Q9Y5A6 473 aaPredicted RBP4.21□□□□□ -1.74
SMC4-220ENST00000488017 PCDHA1Q9Y5I3 950 aa4.21□□□□□ -1.74
SMC4-220ENST00000488017 PSMD9O00233 223 aa4.2□□□□□ -1.74
SMC4-220ENST00000488017 DTNBO60941 627 aa4.2□□□□□ -1.74
SMC4-220ENST00000488017 FTLP02792 175 aaPredicted RBP4.2□□□□□ -1.74
SMC4-220ENST00000488017 GKP32189 559 aa4.2□□□□□ -1.74
SMC4-220ENST00000488017 DGKEP52429 567 aa4.2□□□□□ -1.74
SMC4-220ENST00000488017 WNT3P56703 355 aa4.2□□□□□ -1.74
SMC4-220ENST00000488017 HSF1Q00613 529 aa4.2□□□□□ -1.74
SMC4-220ENST00000488017 MTX1Q13505 466 aa4.2□□□□□ -1.74
SMC4-220ENST00000488017 SEC23BQ15437 767 aa4.2□□□□□ -1.74
SMC4-220ENST00000488017 DENND2CQ68D51 928 aa4.2□□□□□ -1.74
SMC4-220ENST00000488017 LINC01465Q8N7H1 131 aa4.2□□□□□ -1.74
SMC4-220ENST00000488017 B4GALNT2Q8NHY0 566 aa4.2□□□□□ -1.74
SMC4-220ENST00000488017 MEIS3Q99687 375 aa4.2□□□□□ -1.74
SMC4-220ENST00000488017 TMX1Q9H3N1 280 aa4.2□□□□□ -1.74
SMC4-220ENST00000488017 IGLV5-39A0A0G2JS06 123 aa4.19□□□□□ -1.74
SMC4-220ENST00000488017 FOXN3O00409 490 aaPredicted RBP4.19□□□□□ -1.74
SMC4-220ENST00000488017 CES2O00748 559 aa4.19□□□□□ -1.74
SMC4-220ENST00000488017 PMPCBO75439 489 aa4.19□□□□□ -1.74
SMC4-220ENST00000488017 XRCC6P12956 609 aaKnown RBP eCLIP4.19□□□□□ -1.74
SMC4-220ENST00000488017 APEHP13798 732 aaKnown RBP4.19□□□□□ -1.74
SMC4-220ENST00000488017 HDCP19113 662 aa4.19□□□□□ -1.74
SMC4-220ENST00000488017 TNFRSF1BP20333 461 aa4.19□□□□□ -1.74
SMC4-220ENST00000488017 COPB1P53618 953 aaKnown RBP4.19□□□□□ -1.74
SMC4-220ENST00000488017 SOX8P57073 446 aa4.19□□□□□ -1.74
SMC4-220ENST00000488017 LMAN2Q12907 356 aa4.19□□□□□ -1.74
SMC4-220ENST00000488017 PCBP2Q15366 365 aaKnown RBP eCLIP4.19□□□□□ -1.74
SMC4-220ENST00000488017 LY6KQ17RY6 165 aa4.19□□□□□ -1.74
SMC4-220ENST00000488017 ABCB5Q2M3G0 1257 aa4.19□□□□□ -1.74
SMC4-220ENST00000488017 SLC9C1Q4G0N8 1177 aa4.19□□□□□ -1.74
SMC4-220ENST00000488017 AWAT1Q58HT5 328 aa4.19□□□□□ -1.74
SMC4-220ENST00000488017 VSTM1Q6UX27 236 aa4.19□□□□□ -1.74
SMC4-220ENST00000488017 RANBP10Q6VN20 620 aa4.19□□□□□ -1.74
SMC4-220ENST00000488017 PTCHD4Q6ZW05 846 aa4.19□□□□□ -1.74
SMC4-220ENST00000488017 RAB11FIP4Q86YS3 637 aa4.19□□□□□ -1.74
SMC4-220ENST00000488017 MIER2Q8N344 545 aa4.19□□□□□ -1.74
SMC4-220ENST00000488017 PCSK9Q8NBP7 692 aaKnown RBP4.19□□□□□ -1.74
SMC4-220ENST00000488017 FAM84BQ96KN1 310 aaPredicted RBP4.19□□□□□ -1.74
SMC4-220ENST00000488017 MESP1Q9BRJ9 268 aa4.19□□□□□ -1.74
SMC4-220ENST00000488017 TMEM8AQ9HCN3 771 aa4.19□□□□□ -1.74
SMC4-220ENST00000488017 SEMA4BQ9NPR2 832 aaPredicted RBP4.19□□□□□ -1.74
SMC4-220ENST00000488017 SNX14Q9Y5W7 946 aa4.19□□□□□ -1.74
SMC4-220ENST00000488017 TTC3P53804 2025 aa4.19□□□□□ -1.74
SMC4-220ENST00000488017 TLDC2A0PJX2 215 aa4.18□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms