RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 CALCAP01258 141 aa15.61■□□□□ 0.09
USP4-212ENST00000486549 KRT5P13647 590 aa15.61■□□□□ 0.09
USP4-212ENST00000486549 NPR3P17342 541 aa15.61■□□□□ 0.09
USP4-212ENST00000486549 YWHAQP27348 245 aa15.61■□□□□ 0.09
USP4-212ENST00000486549 GOLGA7BQ2TAP0 167 aa15.61■□□□□ 0.09
USP4-212ENST00000486549 ASTLQ6HA08 431 aaPredicted RBP15.61■□□□□ 0.09
USP4-212ENST00000486549 GPRIN1Q7Z2K8 1008 aa15.61■□□□□ 0.09
USP4-212ENST00000486549 MON1AQ86VX9 555 aa15.61■□□□□ 0.09
USP4-212ENST00000486549 RBBP8NLQ8NC74 664 aaPredicted RBP15.61■□□□□ 0.09
USP4-212ENST00000486549 TTC16Q8NEE8 873 aa15.61■□□□□ 0.09
USP4-212ENST00000486549 DUSP16Q9BY84 665 aa15.61■□□□□ 0.09
USP4-212ENST00000486549 NAT10Q9H0A0 1025 aaKnown RBP15.61■□□□□ 0.09
USP4-212ENST00000486549 TRPV4Q9HBA0 871 aa15.61■□□□□ 0.09
USP4-212ENST00000486549 CSNK1G1Q9HCP0 422 aa15.61■□□□□ 0.09
USP4-212ENST00000486549 TICRRQ7Z2Z1 1910 aa15.6■□□□□ 0.09
USP4-212ENST00000486549 TRAV19A0A0A6YYK7 116 aa15.6■□□□□ 0.09
USP4-212ENST00000486549 RNF225M0QZC1 329 aaPredicted RBP15.6■□□□□ 0.09
USP4-212ENST00000486549 TNFRSF10BO14763 440 aa15.6■□□□□ 0.09
USP4-212ENST00000486549 CKMP06732 381 aa15.6■□□□□ 0.09
USP4-212ENST00000486549 TPM2P07951 284 aa15.6■□□□□ 0.09
USP4-212ENST00000486549 VDRP11473 427 aa15.6■□□□□ 0.09
USP4-212ENST00000486549 PSMC3P17980 439 aa15.6■□□□□ 0.09
USP4-212ENST00000486549 PON1P27169 355 aa15.6■□□□□ 0.09
USP4-212ENST00000486549 GDI1P31150 447 aa15.6■□□□□ 0.09
USP4-212ENST00000486549 HOXD11P31277 338 aaPredicted RBP15.6■□□□□ 0.09
USP4-212ENST00000486549 KRT31Q15323 416 aa15.6■□□□□ 0.09
USP4-212ENST00000486549 ARHGAP44Q17R89 818 aa15.6■□□□□ 0.09
USP4-212ENST00000486549 ARHGAP17Q68EM7 881 aa15.6■□□□□ 0.09
USP4-212ENST00000486549 YAF2Q8IY57 180 aa15.6■□□□□ 0.09
USP4-212ENST00000486549 SIX5Q8N196 739 aa15.6■□□□□ 0.09
USP4-212ENST00000486549 E2F7Q96AV8 911 aa15.6■□□□□ 0.09
USP4-212ENST00000486549 SLC22A12Q96S37 553 aa15.6■□□□□ 0.09
USP4-212ENST00000486549 CYP2S1Q96SQ9 504 aa15.6■□□□□ 0.09
USP4-212ENST00000486549 TRMT61BQ9BVS5 477 aaKnown RBP15.6■□□□□ 0.09
USP4-212ENST00000486549 VPS16Q9H269 839 aa15.6■□□□□ 0.09
USP4-212ENST00000486549 BRD9Q9H8M2 597 aa15.6■□□□□ 0.09
USP4-212ENST00000486549 HESX1Q9UBX0 185 aa15.6■□□□□ 0.09
USP4-212ENST00000486549 APEX2Q9UBZ4 518 aa15.6■□□□□ 0.09
USP4-212ENST00000486549 ZMYM5Q9UJ78 669 aa15.6■□□□□ 0.09
USP4-212ENST00000486549 TSPAN16Q9UKR8 245 aa15.6■□□□□ 0.09
USP4-212ENST00000486549 CCL26Q9Y258 94 aa15.6■□□□□ 0.09
USP4-212ENST00000486549 ZNF840PA6NDX5 716 aa15.59■□□□□ 0.09
USP4-212ENST00000486549 HHLA1C9JL84 531 aa15.59■□□□□ 0.09
USP4-212ENST00000486549 LETM1O95202 739 aaPredicted RBP15.59■□□□□ 0.09
USP4-212ENST00000486549 PAEPP09466 180 aa15.59■□□□□ 0.09
USP4-212ENST00000486549 CDK11BP21127 795 aaKnown RBP15.59■□□□□ 0.09
USP4-212ENST00000486549 RFX1P22670 979 aa15.59■□□□□ 0.09
USP4-212ENST00000486549 BRD2P25440 801 aaKnown RBP15.59■□□□□ 0.09
USP4-212ENST00000486549 USP8P40818 1118 aa15.59■□□□□ 0.09
USP4-212ENST00000486549 MFAP3P55082 362 aa15.59■□□□□ 0.09
USP4-212ENST00000486549 NHLH1Q02575 133 aa15.59■□□□□ 0.09
USP4-212ENST00000486549 TTC30AQ86WT1 665 aa15.59■□□□□ 0.09
USP4-212ENST00000486549 MFSD6LQ8IWD5 586 aa15.59■□□□□ 0.09
USP4-212ENST00000486549 ARL14EPQ8N8R7 260 aaPredicted RBP15.59■□□□□ 0.09
USP4-212ENST00000486549 PDZD8Q8NEN9 1154 aa15.59■□□□□ 0.09
USP4-212ENST00000486549 ANKRD20A12PQ8NF67 263 aa15.59■□□□□ 0.09
USP4-212ENST00000486549 DEPDC1BQ8WUY9 529 aa15.59■□□□□ 0.09
USP4-212ENST00000486549 TFAP2BQ92481 460 aa15.59■□□□□ 0.09
USP4-212ENST00000486549 USP13Q92995 863 aaPredicted RBP15.59■□□□□ 0.09
USP4-212ENST00000486549 SIX2Q9NPC8 291 aa15.59■□□□□ 0.09
USP4-212ENST00000486549 SLC2A4RGQ9NR83 387 aa15.59■□□□□ 0.09
USP4-212ENST00000486549 GMIPQ9P107 970 aa15.59■□□□□ 0.09
USP4-212ENST00000486549 CHORDC1Q9UHD1 332 aaPredicted RBP15.59■□□□□ 0.09
USP4-212ENST00000486549 AJAP1Q9UKB5 411 aaPredicted RBP15.59■□□□□ 0.09
USP4-212ENST00000486549 COL4A3Q01955 1670 aa15.59■□□□□ 0.09
USP4-212ENST00000486549 MUC6Q6W4X9 2439 aa15.59■□□□□ 0.09
USP4-212ENST00000486549 O00370 1275 aa15.58■□□□□ 0.08
USP4-212ENST00000486549 CYP26A1O43174 497 aa15.58■□□□□ 0.08
USP4-212ENST00000486549 USP17L7P0C7H9 530 aa15.58■□□□□ 0.08
USP4-212ENST00000486549 HDCP19113 662 aa15.58■□□□□ 0.08
USP4-212ENST00000486549 WEE1P30291 646 aa15.58■□□□□ 0.08
USP4-212ENST00000486549 PPP3CCP48454 512 aa15.58■□□□□ 0.08
USP4-212ENST00000486549 BCAT1P54687 386 aa15.58■□□□□ 0.08
USP4-212ENST00000486549 SLC8A3P57103 927 aa15.58■□□□□ 0.08
USP4-212ENST00000486549 NCAPHQ15003 741 aa15.58■□□□□ 0.08
USP4-212ENST00000486549 IER5LQ5T953 404 aa15.58■□□□□ 0.08
USP4-212ENST00000486549 ENOSF1Q7L5Y1 443 aa15.58■□□□□ 0.08
USP4-212ENST00000486549 CELF5Q8N6W0 485 aaKnown RBP15.58■□□□□ 0.08
USP4-212ENST00000486549 ANKRD52Q8NB46 1076 aa15.58■□□□□ 0.08
USP4-212ENST00000486549 UBA3Q8TBC4 463 aa15.58■□□□□ 0.08
USP4-212ENST00000486549 ZFYVE19Q96K21 471 aa15.58■□□□□ 0.08
USP4-212ENST00000486549 LRRC3BQ96PB8 259 aa15.58■□□□□ 0.08
USP4-212ENST00000486549 LSM14BQ9BX40 385 aaKnown RBP15.58■□□□□ 0.08
USP4-212ENST00000486549 FBXO44Q9H4M3 255 aa15.58■□□□□ 0.08
USP4-212ENST00000486549 ARHGEF3Q9NR81 526 aa15.58■□□□□ 0.08
USP4-212ENST00000486549 TDP1Q9NUW8 608 aa15.58■□□□□ 0.08
USP4-212ENST00000486549 COMMD8Q9NX08 183 aa15.58■□□□□ 0.08
USP4-212ENST00000486549 ZNF318Q5VUA4 2279 aa15.57■□□□□ 0.08
USP4-212ENST00000486549 KIF26AQ9ULI4 1882 aaPredicted RBP15.57■□□□□ 0.08
USP4-212ENST00000486549 KRBA1A5PL33 1030 aa15.57■□□□□ 0.08
USP4-212ENST00000486549 SOBPA7XYQ1 873 aa15.57■□□□□ 0.08
USP4-212ENST00000486549 M0QYV0 167 aa15.57■□□□□ 0.08
USP4-212ENST00000486549 TULP2O00295 520 aa15.57■□□□□ 0.08
USP4-212ENST00000486549 ZNF263O14978 683 aa15.57■□□□□ 0.08
USP4-212ENST00000486549 GALR2O43603 387 aaPredicted RBP15.57■□□□□ 0.08
USP4-212ENST00000486549 PDE6CP51160 858 aa15.57■□□□□ 0.08
USP4-212ENST00000486549 ZNF132P52740 706 aa15.57■□□□□ 0.08
USP4-212ENST00000486549 COPB1P53618 953 aaKnown RBP15.57■□□□□ 0.08
USP4-212ENST00000486549 VCPP55072 806 aaKnown RBP15.57■□□□□ 0.08
USP4-212ENST00000486549 PFKPQ01813 784 aa15.57■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms