RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 RTP4Q96DX8 246 aa12.79□□□□□ -0.36
PTPRF-212ENST00000477970 SGSM3Q96HU1 749 aa12.79□□□□□ -0.36
PTPRF-212ENST00000477970 ZWILCHQ9H900 591 aa12.79□□□□□ -0.36
PTPRF-212ENST00000477970 SAYSD1Q9NPB0 183 aa12.79□□□□□ -0.36
PTPRF-212ENST00000477970 SGK1O00141 431 aa12.79□□□□□ -0.36
PTPRF-212ENST00000477970 STIP1P31948 543 aaKnown RBP12.79□□□□□ -0.36
PTPRF-212ENST00000477970 TFDP2Q14188 446 aa12.79□□□□□ -0.36
PTPRF-212ENST00000477970 NOMO1Q15155 1222 aa12.79□□□□□ -0.36
PTPRF-212ENST00000477970 FAM102AQ5T9C2 384 aaPredicted RBP12.79□□□□□ -0.36
PTPRF-212ENST00000477970 NOTUMQ6P988 496 aa12.79□□□□□ -0.36
PTPRF-212ENST00000477970 ARHGEF18Q6ZSZ5 1173 aa12.79□□□□□ -0.36
PTPRF-212ENST00000477970 CCDC121Q6ZUS5 278 aa12.79□□□□□ -0.36
PTPRF-212ENST00000477970 DPP9Q86TI2 863 aa12.79□□□□□ -0.36
PTPRF-212ENST00000477970 CNPY4Q8N129 248 aa12.79□□□□□ -0.36
PTPRF-212ENST00000477970 KCTD6Q8NC69 237 aa12.79□□□□□ -0.36
PTPRF-212ENST00000477970 TMEM121Q9BTD3 319 aa12.79□□□□□ -0.36
PTPRF-212ENST00000477970 KAT6AQ92794 2004 aa12.79□□□□□ -0.36
PTPRF-212ENST00000477970 ZSCAN5DPP0CG00 497 aa12.78□□□□□ -0.36
PTPRF-212ENST00000477970 OLFML1Q6UWY5 402 aa12.78□□□□□ -0.36
PTPRF-212ENST00000477970 FAM183BPQ6ZVS7 135 aa12.78□□□□□ -0.36
PTPRF-212ENST00000477970 CTU1Q7Z7A3 348 aaKnown RBP12.78□□□□□ -0.36
PTPRF-212ENST00000477970 BEST2Q8NFU1 509 aa12.78□□□□□ -0.36
PTPRF-212ENST00000477970 CCT6BQ92526 530 aa12.78□□□□□ -0.36
PTPRF-212ENST00000477970 PWWP2AQ96N64 755 aa12.78□□□□□ -0.36
PTPRF-212ENST00000477970 GNEQ9Y223 722 aaKnown RBP12.78□□□□□ -0.36
PTPRF-212ENST00000477970 ADAM17P78536 824 aa12.78□□□□□ -0.36
PTPRF-212ENST00000477970 IFT88Q13099 833 aa12.78□□□□□ -0.36
PTPRF-212ENST00000477970 BOLA3Q53S33 107 aa12.78□□□□□ -0.36
PTPRF-212ENST00000477970 EFHC2Q5JST6 749 aa12.78□□□□□ -0.36
PTPRF-212ENST00000477970 SESTD1Q86VW0 696 aa12.78□□□□□ -0.36
PTPRF-212ENST00000477970 LRRC34Q8IZ02 419 aa12.78□□□□□ -0.36
PTPRF-212ENST00000477970 EMC1Q8N766 993 aa12.78□□□□□ -0.36
PTPRF-212ENST00000477970 CPT1BQ92523 772 aa12.78□□□□□ -0.36
PTPRF-212ENST00000477970 FAF2Q96CS3 445 aa12.78□□□□□ -0.36
PTPRF-212ENST00000477970 FRMD8Q9BZ67 464 aaPredicted RBP12.78□□□□□ -0.36
PTPRF-212ENST00000477970 GTF2IRD1Q9UHL9 959 aa12.78□□□□□ -0.36
PTPRF-212ENST00000477970 MDM4O15151 490 aa12.78□□□□□ -0.36
PTPRF-212ENST00000477970 GSTA1P08263 222 aa12.78□□□□□ -0.36
PTPRF-212ENST00000477970 FAM163BP0C2L3 166 aa12.78□□□□□ -0.36
PTPRF-212ENST00000477970 TGM2P21980 687 aa12.78□□□□□ -0.36
PTPRF-212ENST00000477970 YARSP54577 528 aaKnown RBP12.78□□□□□ -0.36
PTPRF-212ENST00000477970 ARL4CP56559 192 aa12.78□□□□□ -0.36
PTPRF-212ENST00000477970 TTC31Q49AM3 519 aaPredicted RBP12.78□□□□□ -0.36
PTPRF-212ENST00000477970 RGS9BPQ6ZS82 235 aa12.78□□□□□ -0.36
PTPRF-212ENST00000477970 TRABD2AQ86V40 505 aa12.78□□□□□ -0.36
PTPRF-212ENST00000477970 SLC35F5Q8WV83 523 aa12.78□□□□□ -0.36
PTPRF-212ENST00000477970 C9orf72Q96LT7 481 aa12.78□□□□□ -0.36
PTPRF-212ENST00000477970 MAGEB18Q96M61 343 aa12.78□□□□□ -0.36
PTPRF-212ENST00000477970 PEBP4Q96S96 227 aa12.78□□□□□ -0.36
PTPRF-212ENST00000477970 DHRS4Q9BTZ2 278 aa12.78□□□□□ -0.36
PTPRF-212ENST00000477970 DNAI2Q9GZS0 605 aa12.78□□□□□ -0.36
PTPRF-212ENST00000477970 SAMD15Q9P1V8 674 aa12.78□□□□□ -0.36
PTPRF-212ENST00000477970 GOLGA6L7A0A1B0GV03 622 aa12.77□□□□□ -0.36
PTPRF-212ENST00000477970 CFAP69A5D8W1 941 aa12.77□□□□□ -0.36
PTPRF-212ENST00000477970 HAS3O00219 553 aa12.77□□□□□ -0.36
PTPRF-212ENST00000477970 MCF2LO15068 1137 aa12.77□□□□□ -0.36
PTPRF-212ENST00000477970 CSDE1O75534 798 aaKnown RBP12.77□□□□□ -0.36
PTPRF-212ENST00000477970 NPTXRO95502 500 aa12.77□□□□□ -0.36
PTPRF-212ENST00000477970 DARSP14868 501 aaKnown RBP12.77□□□□□ -0.36
PTPRF-212ENST00000477970 ETS1P14921 441 aa12.77□□□□□ -0.36
PTPRF-212ENST00000477970 BRAFP15056 766 aa12.77□□□□□ -0.36
PTPRF-212ENST00000477970 PHBP35232 272 aa12.77□□□□□ -0.36
PTPRF-212ENST00000477970 SLC6A3Q01959 620 aa12.77□□□□□ -0.36
PTPRF-212ENST00000477970 PDE4CQ08493 712 aa12.77□□□□□ -0.36
PTPRF-212ENST00000477970 HIF1AQ16665 826 aa12.77□□□□□ -0.36
PTPRF-212ENST00000477970 GOLGA7BQ2TAP0 167 aa12.77□□□□□ -0.36
PTPRF-212ENST00000477970 ANKRD20A8PQ5CZ79 823 aa12.77□□□□□ -0.36
PTPRF-212ENST00000477970 TRNP1Q6NT89 227 aa12.77□□□□□ -0.36
PTPRF-212ENST00000477970 C4orf22Q6V702 233 aa12.77□□□□□ -0.36
PTPRF-212ENST00000477970 PRUNE1Q86TP1 453 aa12.77□□□□□ -0.36
PTPRF-212ENST00000477970 CYP4X1Q8N118 509 aa12.77□□□□□ -0.36
PTPRF-212ENST00000477970 RXFP2Q8WXD0 754 aa12.77□□□□□ -0.36
PTPRF-212ENST00000477970 ACSF2Q96CM8 615 aaPredicted RBP12.77□□□□□ -0.36
PTPRF-212ENST00000477970 PLCD4Q9BRC7 762 aa12.77□□□□□ -0.36
PTPRF-212ENST00000477970 OSBPL7Q9BZF2 842 aa12.77□□□□□ -0.36
PTPRF-212ENST00000477970 CTNNAL1Q9UBT7 734 aa12.77□□□□□ -0.36
PTPRF-212ENST00000477970 SMG5Q9UPR3 1016 aaKnown RBP12.77□□□□□ -0.36
PTPRF-212ENST00000477970 Q9Y3F1 56 aa12.77□□□□□ -0.36
PTPRF-212ENST00000477970 EXOC1LA0A1B0GW35 172 aa12.77□□□□□ -0.37
PTPRF-212ENST00000477970 E5RJQ4 531 aa12.77□□□□□ -0.37
PTPRF-212ENST00000477970 DESP17661 470 aa12.77□□□□□ -0.37
PTPRF-212ENST00000477970 RPL22P35268 128 aaKnown RBP12.77□□□□□ -0.37
PTPRF-212ENST00000477970 PTPN9P43378 593 aa12.77□□□□□ -0.37
PTPRF-212ENST00000477970 PRMT2P55345 433 aa12.77□□□□□ -0.37
PTPRF-212ENST00000477970 SP3Q02447 781 aa12.77□□□□□ -0.37
PTPRF-212ENST00000477970 DPYSL3Q14195 570 aa12.77□□□□□ -0.37
PTPRF-212ENST00000477970 ARHGEF6Q15052 776 aa12.77□□□□□ -0.37
PTPRF-212ENST00000477970 SMTNL2Q2TAL5 461 aa12.77□□□□□ -0.37
PTPRF-212ENST00000477970 MORN1Q5T089 497 aa12.77□□□□□ -0.37
PTPRF-212ENST00000477970 RFX6Q8HWS3 928 aa12.77□□□□□ -0.37
PTPRF-212ENST00000477970 MAP7D3Q8IWC1 876 aa12.77□□□□□ -0.37
PTPRF-212ENST00000477970 RSAD2Q8WXG1 361 aa12.77□□□□□ -0.37
PTPRF-212ENST00000477970 C11orf84Q9BUA3 381 aaPredicted RBP12.77□□□□□ -0.37
PTPRF-212ENST00000477970 PRDM16Q9HAZ2 1276 aa12.77□□□□□ -0.37
PTPRF-212ENST00000477970 DNAJC17Q9NVM6 304 aaKnown RBP12.77□□□□□ -0.37
PTPRF-212ENST00000477970 GDAP2Q9NXN4 497 aa12.77□□□□□ -0.37
PTPRF-212ENST00000477970 UBQLN1Q9UMX0 589 aaKnown RBP12.77□□□□□ -0.37
PTPRF-212ENST00000477970 CD4P01730 458 aa12.77□□□□□ -0.37
PTPRF-212ENST00000477970 SMIM10L2AP0DMW4 78 aa12.77□□□□□ -0.37
PTPRF-212ENST00000477970 SMIM10L2BP0DMW5 78 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms