RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373	TMEM150A	Q86TG1	271 aa		12.22	□□□□□ -0.45
CPNE1-222	ENST00000473373	C1orf210	Q8IVY1	113 aa		12.22	□□□□□ -0.45
CPNE1-222	ENST00000473373	ELOA2	Q8IYF1	753 aa	Predicted RBP	12.22	□□□□□ -0.45
CPNE1-222	ENST00000473373	CPA6	Q8N4T0	437 aa		12.22	□□□□□ -0.45
CPNE1-222	ENST00000473373	TTC39C	Q8N584	583 aa		12.22	□□□□□ -0.45
CPNE1-222	ENST00000473373	PDZD8	Q8NEN9	1154 aa		12.22	□□□□□ -0.45
CPNE1-222	ENST00000473373	USP13	Q92995	863 aa	Predicted RBP	12.22	□□□□□ -0.45
CPNE1-222	ENST00000473373	RSPRY1	Q96DX4	576 aa		12.22	□□□□□ -0.45
CPNE1-222	ENST00000473373	CYFIP2	Q96F07	1278 aa		12.22	□□□□□ -0.45
CPNE1-222	ENST00000473373	HEXIM2	Q96MH2	286 aa	Known RBP	12.22	□□□□□ -0.45
CPNE1-222	ENST00000473373	CEP63	Q96MT8	703 aa		12.22	□□□□□ -0.45
CPNE1-222	ENST00000473373	CYP2S1	Q96SQ9	504 aa		12.22	□□□□□ -0.45
CPNE1-222	ENST00000473373	OSBPL6	Q9BZF3	934 aa		12.22	□□□□□ -0.45
CPNE1-222	ENST00000473373	EBF3	Q9H4W6	596 aa		12.22	□□□□□ -0.45
CPNE1-222	ENST00000473373	DUS2	Q9NX74	493 aa	Known RBP	12.22	□□□□□ -0.45
CPNE1-222	ENST00000473373	HMGXB4	Q9UGU5	601 aa		12.22	□□□□□ -0.45
CPNE1-222	ENST00000473373	CCL26	Q9Y258	94 aa		12.22	□□□□□ -0.45
CPNE1-222	ENST00000473373	MTF2	Q9Y483	593 aa	Predicted RBP	12.22	□□□□□ -0.45
CPNE1-222	ENST00000473373		R4GN57	208 aa		12.22	□□□□□ -0.45
CPNE1-222	ENST00000473373	F5	P12259	2224 aa		12.22	□□□□□ -0.45
CPNE1-222	ENST00000473373	SOBP	A7XYQ1	873 aa		12.21	□□□□□ -0.45
CPNE1-222	ENST00000473373	SPECC1L-ADORA2A	F8WAN1	911 aa		12.21	□□□□□ -0.45
CPNE1-222	ENST00000473373	GOLGA6L22	H0YM25	854 aa		12.21	□□□□□ -0.45
CPNE1-222	ENST00000473373	TADA3	O75528	432 aa		12.21	□□□□□ -0.45
CPNE1-222	ENST00000473373	GLUL	P15104	373 aa		12.21	□□□□□ -0.45
CPNE1-222	ENST00000473373	WEE1	P30291	646 aa		12.21	□□□□□ -0.45
CPNE1-222	ENST00000473373	SLC5A3	P53794	718 aa		12.21	□□□□□ -0.45
CPNE1-222	ENST00000473373	USP46	P62068	366 aa		12.21	□□□□□ -0.45
CPNE1-222	ENST00000473373	TNK2	Q07912	1038 aa		12.21	□□□□□ -0.45
CPNE1-222	ENST00000473373	NR1H3	Q13133	447 aa		12.21	□□□□□ -0.45
CPNE1-222	ENST00000473373	PON2	Q15165	354 aa		12.21	□□□□□ -0.45
CPNE1-222	ENST00000473373	TRIM68	Q6AZZ1	485 aa		12.21	□□□□□ -0.45
CPNE1-222	ENST00000473373	RALGPS2	Q86X27	583 aa	Predicted RBP	12.21	□□□□□ -0.45
CPNE1-222	ENST00000473373	KIAA2013	Q8IYS2	634 aa		12.21	□□□□□ -0.45
CPNE1-222	ENST00000473373	C12orf29	Q8N999	325 aa		12.21	□□□□□ -0.45
CPNE1-222	ENST00000473373	SPATA20	Q8TB22	786 aa		12.21	□□□□□ -0.45
CPNE1-222	ENST00000473373	SH3RF2	Q8TEC5	729 aa		12.21	□□□□□ -0.45
CPNE1-222	ENST00000473373	KCNK16	Q96T55	309 aa		12.21	□□□□□ -0.45
CPNE1-222	ENST00000473373	HINFP	Q9BQA5	517 aa		12.21	□□□□□ -0.45
CPNE1-222	ENST00000473373	FBXO44	Q9H4M3	255 aa		12.21	□□□□□ -0.45
CPNE1-222	ENST00000473373	LMAN1L	Q9HAT1	526 aa		12.21	□□□□□ -0.45
CPNE1-222	ENST00000473373	APOBEC3G	Q9HC16	384 aa	Known RBP	12.21	□□□□□ -0.45
CPNE1-222	ENST00000473373	TRPV5	Q9NQA5	729 aa		12.21	□□□□□ -0.45
CPNE1-222	ENST00000473373	SMPD4	Q9NXE4	827 aa		12.21	□□□□□ -0.45
CPNE1-222	ENST00000473373	RALGAPA1	Q6GYQ0	2036 aa		12.21	□□□□□ -0.46
CPNE1-222	ENST00000473373	FANCM	Q8IYD8	2048 aa		12.21	□□□□□ -0.46
CPNE1-222	ENST00000473373	WDR87	Q6ZQQ6	2873 aa		12.2	□□□□□ -0.46
CPNE1-222	ENST00000473373	VPS13A	Q96RL7	3174 aa		12.2	□□□□□ -0.46
CPNE1-222	ENST00000473373	GNA14	O95837	355 aa		12.2	□□□□□ -0.46
CPNE1-222	ENST00000473373	CCDC192	P0DO97	292 aa		12.2	□□□□□ -0.46
CPNE1-222	ENST00000473373	CD19	P15391	556 aa		12.2	□□□□□ -0.46
CPNE1-222	ENST00000473373	CD44	P16070	742 aa	Known RBP	12.2	□□□□□ -0.46
CPNE1-222	ENST00000473373	CTH	P32929	405 aa		12.2	□□□□□ -0.46
CPNE1-222	ENST00000473373	CACNA2D1	P54289	1103 aa		12.2	□□□□□ -0.46
CPNE1-222	ENST00000473373	CSTF1	Q05048	431 aa	Known RBP	12.2	□□□□□ -0.46
CPNE1-222	ENST00000473373	RUNX3	Q13761	415 aa		12.2	□□□□□ -0.46
CPNE1-222	ENST00000473373	MORC3	Q14149	939 aa		12.2	□□□□□ -0.46
CPNE1-222	ENST00000473373	ZNF268	Q14587	947 aa	Predicted RBP	12.2	□□□□□ -0.46
CPNE1-222	ENST00000473373	PDGFRL	Q15198	375 aa		12.2	□□□□□ -0.46
CPNE1-222	ENST00000473373	FILIP1	Q7Z7B0	1213 aa		12.2	□□□□□ -0.46
CPNE1-222	ENST00000473373	TRIML1	Q8N9V2	468 aa		12.2	□□□□□ -0.46
CPNE1-222	ENST00000473373	ATP2A3	Q93084	1043 aa		12.2	□□□□□ -0.46
CPNE1-222	ENST00000473373	RMDN1	Q96DB5	314 aa		12.2	□□□□□ -0.46
CPNE1-222	ENST00000473373	NT5C1B	Q96P26	610 aa		12.2	□□□□□ -0.46
CPNE1-222	ENST00000473373	GBP4	Q96PP9	640 aa		12.2	□□□□□ -0.46
CPNE1-222	ENST00000473373	DDX23	Q9BUQ8	820 aa	Known RBP	12.2	□□□□□ -0.46
CPNE1-222	ENST00000473373	CHORDC1	Q9UHD1	332 aa	Predicted RBP	12.2	□□□□□ -0.46
CPNE1-222	ENST00000473373	WNT6	Q9Y6F9	365 aa		12.2	□□□□□ -0.46
CPNE1-222	ENST00000473373	RIF1	Q5UIP0	2472 aa	Known RBP	12.2	□□□□□ -0.46
CPNE1-222	ENST00000473373	MED19	A0JLT2	244 aa	Predicted RBP	12.19	□□□□□ -0.46
CPNE1-222	ENST00000473373	CILP	O75339	1184 aa		12.19	□□□□□ -0.46
CPNE1-222	ENST00000473373	LMNA	P02545	664 aa	Known RBP	12.19	□□□□□ -0.46
CPNE1-222	ENST00000473373	IRF1	P10914	325 aa		12.19	□□□□□ -0.46
CPNE1-222	ENST00000473373	ARSA	P15289	507 aa		12.19	□□□□□ -0.46
CPNE1-222	ENST00000473373	PFKL	P17858	780 aa		12.19	□□□□□ -0.46
CPNE1-222	ENST00000473373	ACO1	P21399	889 aa	Known RBP	12.19	□□□□□ -0.46
CPNE1-222	ENST00000473373	TBXAS1	P24557	533 aa	Predicted RBP	12.19	□□□□□ -0.46
CPNE1-222	ENST00000473373	FMO5	P49326	533 aa		12.19	□□□□□ -0.46
CPNE1-222	ENST00000473373	GOLGA8F	Q08AF8	430 aa		12.19	□□□□□ -0.46
CPNE1-222	ENST00000473373	GOLGA8DP	Q0D2H9	430 aa		12.19	□□□□□ -0.46
CPNE1-222	ENST00000473373	INCA1	Q0VD86	236 aa		12.19	□□□□□ -0.46
CPNE1-222	ENST00000473373	GRSF1	Q12849	480 aa	Known RBP eCLIP	12.19	□□□□□ -0.46
CPNE1-222	ENST00000473373	CBWD6	Q4V339	395 aa		12.19	□□□□□ -0.46
CPNE1-222	ENST00000473373	CBWD3	Q5JTY5	395 aa		12.19	□□□□□ -0.46
CPNE1-222	ENST00000473373	CBWD5	Q5RIA9	395 aa		12.19	□□□□□ -0.46
CPNE1-222	ENST00000473373	HECTD3	Q5T447	861 aa		12.19	□□□□□ -0.46
CPNE1-222	ENST00000473373	DDX42	Q86XP3	938 aa	Known RBP eCLIP	12.19	□□□□□ -0.46
CPNE1-222	ENST00000473373	FUK	Q8N0W3	1084 aa		12.19	□□□□□ -0.46
CPNE1-222	ENST00000473373	CRYBG2	Q8N1P7	616 aa		12.19	□□□□□ -0.46
CPNE1-222	ENST00000473373	PPM1K	Q8N3J5	372 aa		12.19	□□□□□ -0.46
CPNE1-222	ENST00000473373	SCAMP5	Q8TAC9	235 aa		12.19	□□□□□ -0.46
CPNE1-222	ENST00000473373	OVCA2	Q8WZ82	227 aa		12.19	□□□□□ -0.46
CPNE1-222	ENST00000473373	SEMA4D	Q92854	862 aa		12.19	□□□□□ -0.46
CPNE1-222	ENST00000473373	TATDN2	Q93075	761 aa		12.19	□□□□□ -0.46
CPNE1-222	ENST00000473373	LRRC3B	Q96PB8	259 aa		12.19	□□□□□ -0.46
CPNE1-222	ENST00000473373	SLC22A12	Q96S37	553 aa		12.19	□□□□□ -0.46
CPNE1-222	ENST00000473373	TTLL2	Q9BWV7	592 aa		12.19	□□□□□ -0.46
CPNE1-222	ENST00000473373	SRRT	Q9BXP5	876 aa	Known RBP	12.19	□□□□□ -0.46
CPNE1-222	ENST00000473373	NUP62CL	Q9H1M0	184 aa		12.19	□□□□□ -0.46
CPNE1-222	ENST00000473373	TLR8	Q9NR97	1041 aa	Known RBP	12.19	□□□□□ -0.46

Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms