RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 ZNF252P-AS1Q0IIN9 211 aa14.36□□□□□ -0.11
CCDC88A-211ENST00000471947 AUHQ13825 339 aaKnown RBP14.36□□□□□ -0.11
CCDC88A-211ENST00000471947 PLEKHA7Q6IQ23 1121 aa14.36□□□□□ -0.11
CCDC88A-211ENST00000471947 MAP7D3Q8IWC1 876 aa14.36□□□□□ -0.11
CCDC88A-211ENST00000471947 EXD1Q8NHP7 514 aa14.36□□□□□ -0.11
CCDC88A-211ENST00000471947 SEC16BQ96JE7 1060 aa14.36□□□□□ -0.11
CCDC88A-211ENST00000471947 TGS1Q96RS0 853 aaKnown RBP14.36□□□□□ -0.11
CCDC88A-211ENST00000471947 SMYD2Q9NRG4 433 aa14.36□□□□□ -0.11
CCDC88A-211ENST00000471947 CYB561D2O14569 222 aa14.36□□□□□ -0.11
CCDC88A-211ENST00000471947 MAPK13O15264 365 aa14.36□□□□□ -0.11
CCDC88A-211ENST00000471947 ATP9BO43861 1147 aa14.36□□□□□ -0.11
CCDC88A-211ENST00000471947 EDNRBP24530 442 aa14.36□□□□□ -0.11
CCDC88A-211ENST00000471947 PITX1P78337 314 aaPredicted RBP14.36□□□□□ -0.11
CCDC88A-211ENST00000471947 FBXO47Q5MNV8 452 aa14.36□□□□□ -0.11
CCDC88A-211ENST00000471947 HIBCHQ6NVY1 386 aaPredicted RBP14.36□□□□□ -0.11
CCDC88A-211ENST00000471947 DNAAF3Q8N9W5 541 aa14.36□□□□□ -0.11
CCDC88A-211ENST00000471947 CCDC197Q8NCU1 140 aa14.36□□□□□ -0.11
CCDC88A-211ENST00000471947 CHMP6Q96FZ7 201 aa14.36□□□□□ -0.11
CCDC88A-211ENST00000471947 CELF6Q96J87 481 aaKnown RBP14.36□□□□□ -0.11
CCDC88A-211ENST00000471947 STMN4Q9H169 189 aaPredicted RBP14.36□□□□□ -0.11
CCDC88A-211ENST00000471947 FLRT1Q9NZU1 646 aa14.36□□□□□ -0.11
CCDC88A-211ENST00000471947 A0A1W2PPM1 405 aa14.36□□□□□ -0.11
CCDC88A-211ENST00000471947 MYADML2A6NDP7 307 aa14.36□□□□□ -0.11
CCDC88A-211ENST00000471947 M0QYT0 321 aa14.36□□□□□ -0.11
CCDC88A-211ENST00000471947 IGF2BP3O00425 579 aaKnown RBP eCLIP14.36□□□□□ -0.11
CCDC88A-211ENST00000471947 FAM155BO75949 473 aa14.36□□□□□ -0.11
CCDC88A-211ENST00000471947 IL18RAPO95256 599 aa14.36□□□□□ -0.11
CCDC88A-211ENST00000471947 TTC4O95801 387 aa14.36□□□□□ -0.11
CCDC88A-211ENST00000471947 EIF3BP55884 814 aaKnown RBP14.36□□□□□ -0.11
CCDC88A-211ENST00000471947 ARHGEF18Q6ZSZ5 1173 aa14.36□□□□□ -0.11
CCDC88A-211ENST00000471947 C3orf20Q8ND61 904 aa14.36□□□□□ -0.11
CCDC88A-211ENST00000471947 PPP1R36Q96LQ0 422 aa14.36□□□□□ -0.11
CCDC88A-211ENST00000471947 C16orf70Q9BSU1 422 aa14.36□□□□□ -0.11
CCDC88A-211ENST00000471947 A0A0G2JND7 137 aa14.35□□□□□ -0.11
CCDC88A-211ENST00000471947 ITKQ08881 620 aa14.35□□□□□ -0.11
CCDC88A-211ENST00000471947 OLIG2Q13516 323 aa14.35□□□□□ -0.11
CCDC88A-211ENST00000471947 C15orf39Q6ZRI6 1047 aa14.35□□□□□ -0.11
CCDC88A-211ENST00000471947 DENND5BQ6ZUT9 1274 aa14.35□□□□□ -0.11
CCDC88A-211ENST00000471947 BHMTQ93088 406 aa14.35□□□□□ -0.11
CCDC88A-211ENST00000471947 TRABDQ9H4I3 376 aa14.35□□□□□ -0.11
CCDC88A-211ENST00000471947 SLCO1B3Q9NPD5 702 aa14.35□□□□□ -0.11
CCDC88A-211ENST00000471947 COL2A1P02458 1487 aaPredicted RBP14.35□□□□□ -0.11
CCDC88A-211ENST00000471947 KDELR1P24390 212 aa14.35□□□□□ -0.11
CCDC88A-211ENST00000471947 BRCC3P46736 316 aa14.35□□□□□ -0.11
CCDC88A-211ENST00000471947 FSCN1Q16658 493 aaKnown RBP14.35□□□□□ -0.11
CCDC88A-211ENST00000471947 DUSP28Q4G0W2 176 aa14.35□□□□□ -0.11
CCDC88A-211ENST00000471947 SPRYD7Q5W111 196 aa14.35□□□□□ -0.11
CCDC88A-211ENST00000471947 EXOC3L1Q86VI1 746 aa14.35□□□□□ -0.11
CCDC88A-211ENST00000471947 EXOC8Q8IYI6 725 aa14.35□□□□□ -0.11
CCDC88A-211ENST00000471947 KCNK16Q96T55 309 aa14.35□□□□□ -0.11
CCDC88A-211ENST00000471947 AVENQ9NQS1 362 aaPredicted RBP14.35□□□□□ -0.11
CCDC88A-211ENST00000471947 ZNF831Q5JPB2 1677 aa14.35□□□□□ -0.11
CCDC88A-211ENST00000471947 GON4LQ3T8J9 2241 aa14.35□□□□□ -0.11
CCDC88A-211ENST00000471947 LTBP1Q14766 1721 aa14.35□□□□□ -0.11
CCDC88A-211ENST00000471947 PSTPIP1O43586 416 aa14.35□□□□□ -0.11
CCDC88A-211ENST00000471947 LIASO43766 372 aa14.35□□□□□ -0.11
CCDC88A-211ENST00000471947 OR4Q2P0C623 313 aa14.35□□□□□ -0.11
CCDC88A-211ENST00000471947 NCAM1P13591 858 aa14.35□□□□□ -0.11
CCDC88A-211ENST00000471947 KRT4P19013 534 aa14.35□□□□□ -0.11
CCDC88A-211ENST00000471947 ARL4AP40617 200 aa14.35□□□□□ -0.11
CCDC88A-211ENST00000471947 PSEN2P49810 448 aa14.35□□□□□ -0.11
CCDC88A-211ENST00000471947 CCNG2Q16589 344 aa14.35□□□□□ -0.11
CCDC88A-211ENST00000471947 SLC27A1Q6PCB7 646 aa14.35□□□□□ -0.11
CCDC88A-211ENST00000471947 PHF13Q86YI8 300 aaPredicted RBP14.35□□□□□ -0.11
CCDC88A-211ENST00000471947 MORC4Q8TE76 937 aa14.35□□□□□ -0.11
CCDC88A-211ENST00000471947 FBF1Q8TES7 1133 aa14.35□□□□□ -0.11
CCDC88A-211ENST00000471947 USP6NLQ92738 828 aa14.35□□□□□ -0.11
CCDC88A-211ENST00000471947 CD101Q93033 1021 aa14.35□□□□□ -0.11
CCDC88A-211ENST00000471947 PCYOX1Q9UHG3 505 aa14.35□□□□□ -0.11
CCDC88A-211ENST00000471947 DOCK3Q8IZD9 2030 aa14.34□□□□□ -0.11
CCDC88A-211ENST00000471947 C17orf102A2RUQ5 167 aa14.34□□□□□ -0.11
CCDC88A-211ENST00000471947 DCAF8L1A6NGE4 600 aa14.34□□□□□ -0.11
CCDC88A-211ENST00000471947 KPNA7A9QM74 516 aa14.34□□□□□ -0.11
CCDC88A-211ENST00000471947 MCF2P10911 925 aa14.34□□□□□ -0.11
CCDC88A-211ENST00000471947 RPL22P35268 128 aaKnown RBP14.34□□□□□ -0.11
CCDC88A-211ENST00000471947 AP3M2P53677 418 aa14.34□□□□□ -0.11
CCDC88A-211ENST00000471947 POU5F1Q01860 360 aaKnown RBP14.34□□□□□ -0.11
CCDC88A-211ENST00000471947 MROH9Q5TGP6 573 aa14.34□□□□□ -0.11
CCDC88A-211ENST00000471947 XYLT1Q86Y38 959 aa14.34□□□□□ -0.11
CCDC88A-211ENST00000471947 ADGRF2Q8IZF7 708 aa14.34□□□□□ -0.11
CCDC88A-211ENST00000471947 DEFB106AQ8N104 65 aa14.34□□□□□ -0.11
CCDC88A-211ENST00000471947 PPTC7Q8NI37 304 aa14.34□□□□□ -0.11
CCDC88A-211ENST00000471947 LGMNQ99538 433 aa14.34□□□□□ -0.11
CCDC88A-211ENST00000471947 PAAF1Q9BRP4 392 aa14.34□□□□□ -0.11
CCDC88A-211ENST00000471947 VTA1Q9NP79 307 aa14.34□□□□□ -0.11
CCDC88A-211ENST00000471947 HAUS2Q9NVX0 235 aa14.34□□□□□ -0.11
CCDC88A-211ENST00000471947 TXNDC16Q9P2K2 825 aa14.34□□□□□ -0.11
CCDC88A-211ENST00000471947 DDX20Q9UHI6 824 aaKnown RBP14.34□□□□□ -0.11
CCDC88A-211ENST00000471947 hCG_1818297A0A087WSY0 165 aa14.34□□□□□ -0.11
CCDC88A-211ENST00000471947 PPFIA2O75334 1257 aa14.34□□□□□ -0.11
CCDC88A-211ENST00000471947 CPP00450 1065 aa14.34□□□□□ -0.11
CCDC88A-211ENST00000471947 VDRP11473 427 aa14.34□□□□□ -0.11
CCDC88A-211ENST00000471947 GBE1Q04446 702 aa14.34□□□□□ -0.11
CCDC88A-211ENST00000471947 CLUL1Q15846 466 aa14.34□□□□□ -0.11
CCDC88A-211ENST00000471947 PID1Q7Z2X4 250 aa14.34□□□□□ -0.11
CCDC88A-211ENST00000471947 SH3GL2Q99962 352 aa14.34□□□□□ -0.11
CCDC88A-211ENST00000471947 PITPNM3Q9BZ71 974 aa14.34□□□□□ -0.11
CCDC88A-211ENST00000471947 PSD3Q9NYI0 1048 aa14.34□□□□□ -0.11
CCDC88A-211ENST00000471947 NENFQ9UMX5 172 aa14.34□□□□□ -0.11
CCDC88A-211ENST00000471947 KCNH4Q9UQ05 1017 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms