RNA–Protein interactions for RNA: ENST00000471309.1

VPS52-216, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 505 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-216ENST00000471309 ADIGQ0VDE8 80 aa9.85□□□□□ -0.83
VPS52-216ENST00000471309 ELAVL2Q12926 359 aaKnown RBP9.85□□□□□ -0.83
VPS52-216ENST00000471309 HADHQ16836 314 aaKnown RBP9.85□□□□□ -0.83
VPS52-216ENST00000471309 RAB41Q5JT25 222 aa9.85□□□□□ -0.83
VPS52-216ENST00000471309 EFHC1Q5JVL4 640 aa9.85□□□□□ -0.83
VPS52-216ENST00000471309 TRNP1Q6NT89 227 aa9.85□□□□□ -0.83
VPS52-216ENST00000471309 AADACL2Q6P093 401 aa9.85□□□□□ -0.83
VPS52-216ENST00000471309 SCUBE3Q8IX30 993 aa9.85□□□□□ -0.83
VPS52-216ENST00000471309 SIX6OS1Q8N1H7 587 aa9.85□□□□□ -0.83
VPS52-216ENST00000471309 ARFGAP1Q8N6T3 406 aa9.85□□□□□ -0.83
VPS52-216ENST00000471309 C12orf50Q8NA57 414 aaPredicted RBP9.85□□□□□ -0.83
VPS52-216ENST00000471309 MAIP1Q8WWC4 291 aa9.85□□□□□ -0.83
VPS52-216ENST00000471309 RXFP2Q8WXD0 754 aa9.85□□□□□ -0.83
VPS52-216ENST00000471309 KHSRPQ92945 711 aaKnown RBP eCLIP9.85□□□□□ -0.83
VPS52-216ENST00000471309 ABHD8Q96I13 439 aa9.85□□□□□ -0.83
VPS52-216ENST00000471309 KRT12Q99456 494 aa9.85□□□□□ -0.83
VPS52-216ENST00000471309 SMOQ99835 787 aa9.85□□□□□ -0.83
VPS52-216ENST00000471309 LRRC1Q9BTT6 524 aa9.85□□□□□ -0.83
VPS52-216ENST00000471309 C11orf84Q9BUA3 381 aaPredicted RBP9.85□□□□□ -0.83
VPS52-216ENST00000471309 TMEM106CQ9BVX2 250 aa9.85□□□□□ -0.83
VPS52-216ENST00000471309 ZCWPW1Q9H0M4 648 aa9.85□□□□□ -0.83
VPS52-216ENST00000471309 LRRC4Q9HBW1 653 aa9.85□□□□□ -0.83
VPS52-216ENST00000471309 CSNK1G1Q9HCP0 422 aa9.85□□□□□ -0.83
VPS52-216ENST00000471309 PNPLA8Q9NP80 782 aa9.85□□□□□ -0.83
VPS52-216ENST00000471309 DMAP1Q9NPF5 467 aaPredicted RBP9.85□□□□□ -0.83
VPS52-216ENST00000471309 STIM2Q9P246 746 aa9.85□□□□□ -0.83
VPS52-216ENST00000471309 PCDH10Q9P2E7 1040 aa9.85□□□□□ -0.83
VPS52-216ENST00000471309 TET1Q8NFU7 2136 aa9.85□□□□□ -0.83
VPS52-216ENST00000471309 VWA8A3KMH1 1905 aa9.84□□□□□ -0.83
VPS52-216ENST00000471309 HSF2BPO75031 334 aa9.84□□□□□ -0.83
VPS52-216ENST00000471309 PHF2O75151 1096 aa9.84□□□□□ -0.83
VPS52-216ENST00000471309 ERLIN1O75477 346 aa9.84□□□□□ -0.83
VPS52-216ENST00000471309 DGKIO75912 1065 aa9.84□□□□□ -0.83
VPS52-216ENST00000471309 ZRANB2O95218 330 aaKnown RBP eCLIP9.84□□□□□ -0.83
VPS52-216ENST00000471309 GLI1P08151 1106 aa9.84□□□□□ -0.83
VPS52-216ENST00000471309 FGFR3P22607 806 aa9.84□□□□□ -0.83
VPS52-216ENST00000471309 TNFRSF8P28908 595 aa9.84□□□□□ -0.83
VPS52-216ENST00000471309 SDC4P31431 198 aa9.84□□□□□ -0.83
VPS52-216ENST00000471309 CHRNA3P32297 505 aa9.84□□□□□ -0.83
VPS52-216ENST00000471309 GJC1P36383 396 aa9.84□□□□□ -0.83
VPS52-216ENST00000471309 CETN2P41208 172 aa9.84□□□□□ -0.83
VPS52-216ENST00000471309 SLC11A1P49279 550 aa9.84□□□□□ -0.83
VPS52-216ENST00000471309 CACNA2D1P54289 1103 aa9.84□□□□□ -0.83
VPS52-216ENST00000471309 MAP3K7CLP57077 242 aa9.84□□□□□ -0.83
VPS52-216ENST00000471309 VSNL1P62760 191 aa9.84□□□□□ -0.83
VPS52-216ENST00000471309 MRPS5P82675 430 aaKnown RBP9.84□□□□□ -0.83
VPS52-216ENST00000471309 MLLT1Q03111 559 aaPredicted RBP9.84□□□□□ -0.83
VPS52-216ENST00000471309 SIX1Q15475 284 aaPredicted RBP9.84□□□□□ -0.83
VPS52-216ENST00000471309 TAF5Q15542 800 aa9.84□□□□□ -0.83
VPS52-216ENST00000471309 CYP1B1Q16678 543 aa9.84□□□□□ -0.83
VPS52-216ENST00000471309 CCDC14Q49A88 953 aa9.84□□□□□ -0.83
VPS52-216ENST00000471309 MFSD5Q6N075 450 aa9.84□□□□□ -0.83
VPS52-216ENST00000471309 LIN28BQ6ZN17 250 aaKnown RBP eCLIP9.84□□□□□ -0.83
VPS52-216ENST00000471309 C4orf50Q6ZRC1 276 aa9.84□□□□□ -0.83
VPS52-216ENST00000471309 CCDC50Q8IVM0 306 aa9.84□□□□□ -0.83
VPS52-216ENST00000471309 KLHL7Q8IXQ5 586 aa9.84□□□□□ -0.83
VPS52-216ENST00000471309 RCOR2Q8IZ40 523 aa9.84□□□□□ -0.83
VPS52-216ENST00000471309 DCP1BQ8IZD4 617 aaKnown RBP9.84□□□□□ -0.83
VPS52-216ENST00000471309 SCML4Q8N228 414 aa9.84□□□□□ -0.83
VPS52-216ENST00000471309 PRELID2Q8N945 189 aa9.84□□□□□ -0.83
VPS52-216ENST00000471309 ZMIZ2Q8NF64 920 aa9.84□□□□□ -0.83
VPS52-216ENST00000471309 CLEC4CQ8WTT0 213 aa9.84□□□□□ -0.83
VPS52-216ENST00000471309 HNRNPLLQ8WVV9 542 aaKnown RBP9.84□□□□□ -0.83
VPS52-216ENST00000471309 OXCT2Q9BYC2 517 aaPredicted RBP9.84□□□□□ -0.83
VPS52-216ENST00000471309 DDX47Q9H0S4 455 aaKnown RBP9.84□□□□□ -0.83
VPS52-216ENST00000471309 CNGB3Q9NQW8 809 aa9.84□□□□□ -0.83
VPS52-216ENST00000471309 FAN1Q9Y2M0 1017 aa9.84□□□□□ -0.83
VPS52-216ENST00000471309 TRIM43BA6NCK2 446 aa9.83□□□□□ -0.84
VPS52-216ENST00000471309 CCDC85CA6NKD9 419 aa9.83□□□□□ -0.84
VPS52-216ENST00000471309 HHLA1C9JL84 531 aa9.83□□□□□ -0.84
VPS52-216ENST00000471309 RAD51CO43502 376 aa9.83□□□□□ -0.84
VPS52-216ENST00000471309 GRAP2O75791 330 aa9.83□□□□□ -0.84
VPS52-216ENST00000471309 BAIAP3O94812 1187 aa9.83□□□□□ -0.84
VPS52-216ENST00000471309 HEXIM1O94992 359 aaKnown RBP9.83□□□□□ -0.84
VPS52-216ENST00000471309 AMHP03971 560 aa9.83□□□□□ -0.84
VPS52-216ENST00000471309 ALDH2P05091 517 aa9.83□□□□□ -0.84
VPS52-216ENST00000471309 GALTP07902 379 aa9.83□□□□□ -0.84
VPS52-216ENST00000471309 RALAP11233 206 aa9.83□□□□□ -0.84
VPS52-216ENST00000471309 CSF2RAP15509 400 aa9.83□□□□□ -0.84
VPS52-216ENST00000471309 RAG1P15918 1043 aa9.83□□□□□ -0.84
VPS52-216ENST00000471309 MIPP30301 263 aa9.83□□□□□ -0.84
VPS52-216ENST00000471309 FNTAP49354 379 aa9.83□□□□□ -0.84
VPS52-216ENST00000471309 CLCN6P51797 869 aa9.83□□□□□ -0.84
VPS52-216ENST00000471309 TKTL1P51854 596 aa9.83□□□□□ -0.84
VPS52-216ENST00000471309 DAOAP59103 153 aa9.83□□□□□ -0.84
VPS52-216ENST00000471309 KLF1Q13351 362 aaPredicted RBP9.83□□□□□ -0.84
VPS52-216ENST00000471309 DHX34Q14147 1143 aaKnown RBP9.83□□□□□ -0.84
VPS52-216ENST00000471309 MRPL58Q14197 206 aaKnown RBP9.83□□□□□ -0.84
VPS52-216ENST00000471309 SMC1AQ14683 1233 aaKnown RBP9.83□□□□□ -0.84
VPS52-216ENST00000471309 NFE2Q16621 373 aaPredicted RBP9.83□□□□□ -0.84
VPS52-216ENST00000471309 VARS2Q5ST30 1063 aaKnown RBP9.83□□□□□ -0.84
VPS52-216ENST00000471309 TXNRD3NBQ6F5E7 133 aa9.83□□□□□ -0.84
VPS52-216ENST00000471309 ZNF280DQ6N043 979 aa9.83□□□□□ -0.84
VPS52-216ENST00000471309 FUT10Q6P4F1 479 aa9.83□□□□□ -0.84
VPS52-216ENST00000471309 SPOCD1Q6ZMY3 1216 aa9.83□□□□□ -0.84
VPS52-216ENST00000471309 MAATS1Q7Z4T9 603 aa9.83□□□□□ -0.84
VPS52-216ENST00000471309 UBE2Q1Q7Z7E8 422 aa9.83□□□□□ -0.84
VPS52-216ENST00000471309 LRRTM3Q86VH5 581 aa9.83□□□□□ -0.84
VPS52-216ENST00000471309 SPATA2LQ8IUW3 424 aaPredicted RBP9.83□□□□□ -0.84
VPS52-216ENST00000471309 ZDHHC14Q8IZN3 488 aa9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 80.4 ms