RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 CRNKL1Q9BZJ0 848 aaKnown RBP5.62□□□□□ -1.51
HMGB1-207ENST00000468384 SLITRK6Q9H5Y7 841 aa5.62□□□□□ -1.51
HMGB1-207ENST00000468384 PIF1Q9H611 641 aa5.62□□□□□ -1.51
HMGB1-207ENST00000468384 SATB2Q9UPW6 733 aa5.62□□□□□ -1.51
HMGB1-207ENST00000468384 CNTNAP2Q9UHC6 1331 aa5.62□□□□□ -1.51
HMGB1-207ENST00000468384 IGKV6D-41A0A0C4DH26 115 aa5.61□□□□□ -1.51
HMGB1-207ENST00000468384 F8W810 466 aa5.61□□□□□ -1.51
HMGB1-207ENST00000468384 EIF5BO60841 1220 aaKnown RBP5.61□□□□□ -1.51
HMGB1-207ENST00000468384 TGFB1P01137 390 aa5.61□□□□□ -1.51
HMGB1-207ENST00000468384 FGRP09769 529 aa5.61□□□□□ -1.51
HMGB1-207ENST00000468384 USP17L7P0C7H9 530 aa5.61□□□□□ -1.51
HMGB1-207ENST00000468384 WT1P19544 449 aaPredicted RBP5.61□□□□□ -1.51
HMGB1-207ENST00000468384 SREBF1P36956 1147 aa5.61□□□□□ -1.51
HMGB1-207ENST00000468384 PLCB4Q15147 1175 aa5.61□□□□□ -1.51
HMGB1-207ENST00000468384 C3orf38Q5JPI3 329 aa5.61□□□□□ -1.51
HMGB1-207ENST00000468384 CYP4A22Q5TCH4 519 aa5.61□□□□□ -1.51
HMGB1-207ENST00000468384 C12orf60Q5U649 245 aa5.61□□□□□ -1.51
HMGB1-207ENST00000468384 PDZRN4Q6ZMN7 1036 aaPredicted RBP5.61□□□□□ -1.51
HMGB1-207ENST00000468384 CYFIP1Q7L576 1253 aa5.61□□□□□ -1.51
HMGB1-207ENST00000468384 ZNF438Q7Z4V0 828 aa5.61□□□□□ -1.51
HMGB1-207ENST00000468384 CLEC14AQ86T13 490 aa5.61□□□□□ -1.51
HMGB1-207ENST00000468384 TRAPPC12Q8WVT3 735 aa5.61□□□□□ -1.51
HMGB1-207ENST00000468384 TBC1D5Q92609 795 aa5.61□□□□□ -1.51
HMGB1-207ENST00000468384 EXOC4Q96A65 974 aa5.61□□□□□ -1.51
HMGB1-207ENST00000468384 PRR11Q96HE9 360 aaPredicted RBP5.61□□□□□ -1.51
HMGB1-207ENST00000468384 FAM193BQ96PV7 902 aaPredicted RBP5.61□□□□□ -1.51
HMGB1-207ENST00000468384 DEPDC7Q96QD5 511 aa5.61□□□□□ -1.51
HMGB1-207ENST00000468384 GPR62Q9BZJ7 368 aa5.61□□□□□ -1.51
HMGB1-207ENST00000468384 SPRTNQ9H040 489 aaPredicted RBP5.61□□□□□ -1.51
HMGB1-207ENST00000468384 MIR1-1HGQ9H1L0 117 aa5.61□□□□□ -1.51
HMGB1-207ENST00000468384 NPHS2Q9NP85 383 aa5.61□□□□□ -1.51
HMGB1-207ENST00000468384 IFT57Q9NWB7 429 aa5.61□□□□□ -1.51
HMGB1-207ENST00000468384 ZDHHC3Q9NYG2 299 aa5.61□□□□□ -1.51
HMGB1-207ENST00000468384 ERAP1Q9NZ08 941 aa5.61□□□□□ -1.51
HMGB1-207ENST00000468384 TMEM63CQ9P1W3 806 aa5.61□□□□□ -1.51
HMGB1-207ENST00000468384 FAM8A1Q9UBU6 413 aa5.61□□□□□ -1.51
HMGB1-207ENST00000468384 SNX11Q9Y5W9 270 aa5.61□□□□□ -1.51
HMGB1-207ENST00000468384 KCNMB2Q9Y691 235 aa5.61□□□□□ -1.51
HMGB1-207ENST00000468384 GREB1LQ9C091 1923 aaPredicted RBP5.6□□□□□ -1.51
HMGB1-207ENST00000468384 ANTXRLA6NF34 631 aa5.6□□□□□ -1.51
HMGB1-207ENST00000468384 MEIS3P2A8K0S8 358 aa5.6□□□□□ -1.51
HMGB1-207ENST00000468384 H0Y8X5 98 aa5.6□□□□□ -1.51
HMGB1-207ENST00000468384 ADAM12O43184 909 aa5.6□□□□□ -1.51
HMGB1-207ENST00000468384 PAPSS1O43252 624 aaPredicted RBP5.6□□□□□ -1.51
HMGB1-207ENST00000468384 JAK2O60674 1132 aa5.6□□□□□ -1.51
HMGB1-207ENST00000468384 CSO75390 466 aaKnown RBP5.6□□□□□ -1.51
HMGB1-207ENST00000468384 IDH1O75874 414 aaKnown RBP5.6□□□□□ -1.51
HMGB1-207ENST00000468384 HEXAP06865 529 aa5.6□□□□□ -1.51
HMGB1-207ENST00000468384 GPC1P35052 558 aa5.6□□□□□ -1.51
HMGB1-207ENST00000468384 PHKA2P46019 1235 aa5.6□□□□□ -1.51
HMGB1-207ENST00000468384 ST13P50502 369 aaKnown RBP5.6□□□□□ -1.51
HMGB1-207ENST00000468384 ARSDP51689 593 aa5.6□□□□□ -1.51
HMGB1-207ENST00000468384 RNASE9P60153 205 aaKnown RBP5.6□□□□□ -1.51
HMGB1-207ENST00000468384 E2F1Q01094 437 aa5.6□□□□□ -1.51
HMGB1-207ENST00000468384 RUNX3Q13761 415 aa5.6□□□□□ -1.51
HMGB1-207ENST00000468384 TEAD2Q15562 447 aa5.6□□□□□ -1.51
HMGB1-207ENST00000468384 HIF1AQ16665 826 aa5.6□□□□□ -1.51
HMGB1-207ENST00000468384 CDCP2Q5VXM1 449 aa5.6□□□□□ -1.51
HMGB1-207ENST00000468384 RCSD1Q6JBY9 416 aa5.6□□□□□ -1.51
HMGB1-207ENST00000468384 NXPE4Q6UWF7 544 aa5.6□□□□□ -1.51
HMGB1-207ENST00000468384 ZNF662Q6ZS27 426 aa5.6□□□□□ -1.51
HMGB1-207ENST00000468384 IGSF8Q969P0 613 aa5.6□□□□□ -1.51
HMGB1-207ENST00000468384 PPP1R16BQ96T49 567 aa5.6□□□□□ -1.51
HMGB1-207ENST00000468384 GPR88Q9GZN0 384 aa5.6□□□□□ -1.51
HMGB1-207ENST00000468384 CXXC4Q9H2H0 198 aa5.6□□□□□ -1.51
HMGB1-207ENST00000468384 PTPRHQ9HD43 1115 aa5.6□□□□□ -1.51
HMGB1-207ENST00000468384 COPRSQ9NQ92 184 aa5.6□□□□□ -1.51
HMGB1-207ENST00000468384 HPS4Q9NQG7 708 aa5.6□□□□□ -1.51
HMGB1-207ENST00000468384 PXMP2Q9NR77 195 aa5.6□□□□□ -1.51
HMGB1-207ENST00000468384 MTMR4Q9NYA4 1195 aa5.6□□□□□ -1.51
HMGB1-207ENST00000468384 NFE2L3Q9Y4A8 694 aa5.6□□□□□ -1.51
HMGB1-207ENST00000468384 IPPQ9Y573 584 aa5.6□□□□□ -1.51
HMGB1-207ENST00000468384 TENM3Q9P273 2699 aa5.59□□□□□ -1.51
HMGB1-207ENST00000468384 TCRBV21S2A2A0A5A6 115 aa5.59□□□□□ -1.51
HMGB1-207ENST00000468384 ANKRD62A6NC57 917 aa5.59□□□□□ -1.51
HMGB1-207ENST00000468384 CYP26A1O43174 497 aa5.59□□□□□ -1.51
HMGB1-207ENST00000468384 PHACTR2O75167 634 aa5.59□□□□□ -1.51
HMGB1-207ENST00000468384 NDUFS2O75306 463 aa5.59□□□□□ -1.51
HMGB1-207ENST00000468384 TTLL1O95922 423 aa5.59□□□□□ -1.51
HMGB1-207ENST00000468384 COX6B1P14854 86 aa5.59□□□□□ -1.51
HMGB1-207ENST00000468384 CKMT2P17540 419 aa5.59□□□□□ -1.51
HMGB1-207ENST00000468384 ATP4AP20648 1035 aa5.59□□□□□ -1.51
HMGB1-207ENST00000468384 TCF7P36402 384 aaPredicted RBP5.59□□□□□ -1.51
HMGB1-207ENST00000468384 OR1G1P47890 313 aa5.59□□□□□ -1.51
HMGB1-207ENST00000468384 CSNK1EP49674 416 aaKnown RBP5.59□□□□□ -1.51
HMGB1-207ENST00000468384 AFF1P51825 1210 aaKnown RBP5.59□□□□□ -1.51
HMGB1-207ENST00000468384 GNAI1P63096 354 aa5.59□□□□□ -1.51
HMGB1-207ENST00000468384 SP4Q02446 784 aa5.59□□□□□ -1.51
HMGB1-207ENST00000468384 ZRSR2Q15696 482 aaKnown RBP5.59□□□□□ -1.51
HMGB1-207ENST00000468384 RTP2Q5QGT7 225 aa5.59□□□□□ -1.51
HMGB1-207ENST00000468384 MANEAQ5SRI9 462 aa5.59□□□□□ -1.51
HMGB1-207ENST00000468384 VASH2Q86V25 355 aa5.59□□□□□ -1.51
HMGB1-207ENST00000468384 GATAD2AQ86YP4 633 aa5.59□□□□□ -1.51
HMGB1-207ENST00000468384 NOSTRINQ8IVI9 506 aa5.59□□□□□ -1.51
HMGB1-207ENST00000468384 KIAA0319LQ8IZA0 1049 aa5.59□□□□□ -1.51
HMGB1-207ENST00000468384 URGCPQ8TCY9 931 aa5.59□□□□□ -1.51
HMGB1-207ENST00000468384 CD101Q93033 1021 aa5.59□□□□□ -1.51
HMGB1-207ENST00000468384 HPS3Q969F9 1004 aa5.59□□□□□ -1.51
HMGB1-207ENST00000468384 CEP95Q96GE4 821 aa5.59□□□□□ -1.51
HMGB1-207ENST00000468384 FAM83CQ9BQN1 747 aa5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms