RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 SNX30Q5VWJ9 437 aa12.54□□□□□ -0.4
VPS52-213ENST00000461743 PHLDB3Q6NSJ2 640 aa12.54□□□□□ -0.4
VPS52-213ENST00000461743 POTEHQ6S545 545 aa12.54□□□□□ -0.4
VPS52-213ENST00000461743 MFSD6LQ8IWD5 586 aa12.54□□□□□ -0.4
VPS52-213ENST00000461743 ANKRD52Q8NB46 1076 aa12.54□□□□□ -0.4
VPS52-213ENST00000461743 RBBP8NLQ8NC74 664 aaPredicted RBP12.54□□□□□ -0.4
VPS52-213ENST00000461743 STKLD1Q8NE28 680 aa12.54□□□□□ -0.4
VPS52-213ENST00000461743 ZMIZ2Q8NF64 920 aa12.54□□□□□ -0.4
VPS52-213ENST00000461743 RSAD2Q8WXG1 361 aa12.54□□□□□ -0.4
VPS52-213ENST00000461743 ASIC4Q96FT7 647 aa12.54□□□□□ -0.4
VPS52-213ENST00000461743 ZSWIM3Q96MP5 696 aa12.54□□□□□ -0.4
VPS52-213ENST00000461743 KREMEN1Q96MU8 473 aa12.54□□□□□ -0.4
VPS52-213ENST00000461743 KCNK16Q96T55 309 aa12.54□□□□□ -0.4
VPS52-213ENST00000461743 KXD1Q9BQD3 176 aa12.54□□□□□ -0.4
VPS52-213ENST00000461743 FUCA2Q9BTY2 467 aa12.54□□□□□ -0.4
VPS52-213ENST00000461743 TRPV5Q9NQA5 729 aa12.54□□□□□ -0.4
VPS52-213ENST00000461743 HESX1Q9UBX0 185 aa12.54□□□□□ -0.4
VPS52-213ENST00000461743 PCDHB4Q9Y5E5 795 aa12.54□□□□□ -0.4
VPS52-213ENST00000461743 SMTNL1A8MU46 457 aa12.53□□□□□ -0.4
VPS52-213ENST00000461743 O00370 1275 aa12.53□□□□□ -0.4
VPS52-213ENST00000461743 DPYSL4O14531 572 aa12.53□□□□□ -0.4
VPS52-213ENST00000461743 XPO1O14980 1071 aaKnown RBP12.53□□□□□ -0.4
VPS52-213ENST00000461743 OLFM2O95897 454 aa12.53□□□□□ -0.4
VPS52-213ENST00000461743 USP17L7P0C7H9 530 aa12.53□□□□□ -0.4
VPS52-213ENST00000461743 ZDHHC11BP0C7U3 371 aa12.53□□□□□ -0.4
VPS52-213ENST00000461743 ZNF18P17022 549 aa12.53□□□□□ -0.4
VPS52-213ENST00000461743 PSEN1P49768 467 aa12.53□□□□□ -0.4
VPS52-213ENST00000461743 MAP3K7CLP57077 242 aa12.53□□□□□ -0.4
VPS52-213ENST00000461743 PLCB2Q00722 1185 aa12.53□□□□□ -0.4
VPS52-213ENST00000461743 TAF10Q12962 218 aa12.53□□□□□ -0.4
VPS52-213ENST00000461743 USP4Q13107 963 aa12.53□□□□□ -0.4
VPS52-213ENST00000461743 NCAPHQ15003 741 aa12.53□□□□□ -0.4
VPS52-213ENST00000461743 FKBP15Q5T1M5 1219 aa12.53□□□□□ -0.4
VPS52-213ENST00000461743 TANGO2Q6ICL3 276 aa12.53□□□□□ -0.4
VPS52-213ENST00000461743 VITQ6UXI7 678 aa12.53□□□□□ -0.4
VPS52-213ENST00000461743 RRAGAQ7L523 313 aa12.53□□□□□ -0.4
VPS52-213ENST00000461743 ARID3BQ8IVW6 561 aaPredicted RBP12.53□□□□□ -0.4
VPS52-213ENST00000461743 AOPEPQ8N6M6 819 aa12.53□□□□□ -0.4
VPS52-213ENST00000461743 CELF5Q8N6W0 485 aaKnown RBP12.53□□□□□ -0.4
VPS52-213ENST00000461743 SHC3Q92529 594 aa12.53□□□□□ -0.4
VPS52-213ENST00000461743 IRF7Q92985 503 aa12.53□□□□□ -0.4
VPS52-213ENST00000461743 FBXO32Q969P5 355 aa12.53□□□□□ -0.4
VPS52-213ENST00000461743 MSANTD3Q96H12 275 aa12.53□□□□□ -0.4
VPS52-213ENST00000461743 CRACR2AQ9BSW2 395 aa12.53□□□□□ -0.4
VPS52-213ENST00000461743 SLC46A2Q9BY10 475 aa12.53□□□□□ -0.4
VPS52-213ENST00000461743 UBE2TQ9NPD8 197 aaPredicted RBP12.53□□□□□ -0.4
VPS52-213ENST00000461743 C11orf16Q9NQ32 467 aa12.53□□□□□ -0.4
VPS52-213ENST00000461743 PLCB1Q9NQ66 1216 aa12.53□□□□□ -0.4
VPS52-213ENST00000461743 FANCLQ9NW38 375 aa12.53□□□□□ -0.4
VPS52-213ENST00000461743 LIMA1Q9UHB6 759 aaKnown RBP12.53□□□□□ -0.4
VPS52-213ENST00000461743 TSPAN16Q9UKR8 245 aa12.53□□□□□ -0.4
VPS52-213ENST00000461743 SCML2Q9UQR0 700 aa12.53□□□□□ -0.4
VPS52-213ENST00000461743 SYCE3A1L190 88 aa12.52□□□□□ -0.41
VPS52-213ENST00000461743 ZNF840PA6NDX5 716 aa12.52□□□□□ -0.41
VPS52-213ENST00000461743 HEPACAM2A8MVW5 462 aa12.52□□□□□ -0.41
VPS52-213ENST00000461743 HHLA1C9JL84 531 aa12.52□□□□□ -0.41
VPS52-213ENST00000461743 PES1O00541 588 aaKnown RBP12.52□□□□□ -0.41
VPS52-213ENST00000461743 CHADO15335 359 aa12.52□□□□□ -0.41
VPS52-213ENST00000461743 NARSO43776 548 aaKnown RBP12.52□□□□□ -0.41
VPS52-213ENST00000461743 BEST1O76090 585 aa12.52□□□□□ -0.41
VPS52-213ENST00000461743 PRAMEF12O95522 483 aa12.52□□□□□ -0.41
VPS52-213ENST00000461743 OAS1P00973 400 aaKnown RBP12.52□□□□□ -0.41
VPS52-213ENST00000461743 CKMP06732 381 aa12.52□□□□□ -0.41
VPS52-213ENST00000461743 CD19P15391 556 aa12.52□□□□□ -0.41
VPS52-213ENST00000461743 SLC9A1P19634 815 aa12.52□□□□□ -0.41
VPS52-213ENST00000461743 PLA2G4AP47712 749 aa12.52□□□□□ -0.41
VPS52-213ENST00000461743 KIF11P52732 1056 aa12.52□□□□□ -0.41
VPS52-213ENST00000461743 MLLT6P55198 1093 aaPredicted RBP12.52□□□□□ -0.41
VPS52-213ENST00000461743 GOLGA7BQ2TAP0 167 aa12.52□□□□□ -0.41
VPS52-213ENST00000461743 ARHGAP29Q52LW3 1261 aa12.52□□□□□ -0.41
VPS52-213ENST00000461743 HSP90AA4PQ58FG1 418 aa12.52□□□□□ -0.41
VPS52-213ENST00000461743 TXNDC8Q6A555 127 aa12.52□□□□□ -0.41
VPS52-213ENST00000461743 C1orf228Q6PIY5 440 aa12.52□□□□□ -0.41
VPS52-213ENST00000461743 LCLAT1Q6UWP7 414 aa12.52□□□□□ -0.41
VPS52-213ENST00000461743 CCDC186Q7Z3E2 898 aa12.52□□□□□ -0.41
VPS52-213ENST00000461743 DDX42Q86XP3 938 aaKnown RBP eCLIP12.52□□□□□ -0.41
VPS52-213ENST00000461743 MAB21L3Q8N8X9 362 aa12.52□□□□□ -0.41
VPS52-213ENST00000461743 KAT5Q92993 513 aa12.52□□□□□ -0.41
VPS52-213ENST00000461743 CDK5RAP1Q96SZ6 601 aaKnown RBP12.52□□□□□ -0.41
VPS52-213ENST00000461743 TRMT61BQ9BVS5 477 aaKnown RBP12.52□□□□□ -0.41
VPS52-213ENST00000461743 SIX2Q9NPC8 291 aa12.52□□□□□ -0.41
VPS52-213ENST00000461743 ARHGEF3Q9NR81 526 aa12.52□□□□□ -0.41
VPS52-213ENST00000461743 TLR8Q9NR97 1041 aaKnown RBP12.52□□□□□ -0.41
VPS52-213ENST00000461743 TDP1Q9NUW8 608 aa12.52□□□□□ -0.41
VPS52-213ENST00000461743 TAB2Q9NYJ8 693 aa12.52□□□□□ -0.41
VPS52-213ENST00000461743 FBXL21Q9UKT6 434 aa12.52□□□□□ -0.41
VPS52-213ENST00000461743 ARHGAP26Q9UNA1 814 aa12.52□□□□□ -0.41
VPS52-213ENST00000461743 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.52□□□□□ -0.41
VPS52-213ENST00000461743 LRRC10BA6NIK2 292 aa12.51□□□□□ -0.41
VPS52-213ENST00000461743 LGALS16A8MUM7 142 aa12.51□□□□□ -0.41
VPS52-213ENST00000461743 MED7O43513 233 aa12.51□□□□□ -0.41
VPS52-213ENST00000461743 KRT5P13647 590 aa12.51□□□□□ -0.41
VPS52-213ENST00000461743 GLULP15104 373 aa12.51□□□□□ -0.41
VPS52-213ENST00000461743 ZNF165P49910 485 aa12.51□□□□□ -0.41
VPS52-213ENST00000461743 COPB1P53618 953 aaKnown RBP12.51□□□□□ -0.41
VPS52-213ENST00000461743 SLC7A9P82251 487 aa12.51□□□□□ -0.41
VPS52-213ENST00000461743 PRKCQQ04759 706 aa12.51□□□□□ -0.41
VPS52-213ENST00000461743 ZNF77Q15935 545 aa12.51□□□□□ -0.41
VPS52-213ENST00000461743 CNGA2Q16280 664 aa12.51□□□□□ -0.41
VPS52-213ENST00000461743 PKDCCQ504Y2 493 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms