RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 TOB1P50616 345 aaPredicted RBP8.05□□□□□ -1.12
NEDD9-204ENST00000448183 LAMC2Q13753 1193 aa8.05□□□□□ -1.12
NEDD9-204ENST00000448183 CLEC16AQ2KHT3 1053 aa8.05□□□□□ -1.12
NEDD9-204ENST00000448183 ZRANB3Q5FWF4 1079 aa8.05□□□□□ -1.12
NEDD9-204ENST00000448183 PLEKHA7Q6IQ23 1121 aa8.05□□□□□ -1.12
NEDD9-204ENST00000448183 MOXD1Q6UVY6 613 aa8.05□□□□□ -1.12
NEDD9-204ENST00000448183 HDDC2Q7Z4H3 204 aa8.05□□□□□ -1.12
NEDD9-204ENST00000448183 RBM46Q8TBY0 533 aaKnown RBP8.05□□□□□ -1.12
NEDD9-204ENST00000448183 GLMNQ92990 594 aa8.05□□□□□ -1.12
NEDD9-204ENST00000448183 ZNF518BQ9C0D4 1074 aa8.05□□□□□ -1.12
NEDD9-204ENST00000448183 C19orf81C9J6K1 198 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 F8W810 466 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 STX7O15400 261 aaKnown RBP8.04□□□□□ -1.12
NEDD9-204ENST00000448183 SOX6P35712 828 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 SARSP49591 514 aaKnown RBP8.04□□□□□ -1.12
NEDD9-204ENST00000448183 SLC34A1Q06495 639 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 ARHGEF7Q14155 803 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 TTLL9Q3SXZ7 439 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 FUT11Q495W5 492 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 C11orf63Q6NUN7 778 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 CDC42EP5Q6NZY7 148 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 DENND5BQ6ZUT9 1274 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 CBWD2Q8IUF1 395 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 RIN3Q8TB24 985 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 RSPH1Q8WYR4 309 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 MTMR8Q96EF0 704 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 UBE2OQ9C0C9 1292 aaKnown RBP8.04□□□□□ -1.12
NEDD9-204ENST00000448183 ZCWPW1Q9H0M4 648 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 NCKIPSDQ9NZQ3 722 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 CTNNAL1Q9UBT7 734 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 TRMT6Q9UJA5 497 aaKnown RBP8.04□□□□□ -1.12
NEDD9-204ENST00000448183 C15orf41Q9Y2V0 281 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 SETD1BQ9UPS6 1966 aaKnown RBP8.04□□□□□ -1.12
NEDD9-204ENST00000448183 E9PBE3 544 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 KLHL41O60662 606 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 FAM58BPP0C7Q3 252 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 FAM200BP0CF97 657 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 PRIM2P49643 509 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 RAD23AP54725 363 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 TBL3Q12788 808 aaKnown RBP8.04□□□□□ -1.12
NEDD9-204ENST00000448183 MAPRE1Q15691 268 aaKnown RBP8.04□□□□□ -1.12
NEDD9-204ENST00000448183 UGT3A1Q6NUS8 523 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 SPOCD1Q6ZMY3 1216 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 FBXO33Q7Z6M2 555 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 CHSY1Q86X52 802 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 MUC3BQ9H195 1237 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 WWOXQ9NZC7 414 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 KIAA1257Q9ULG3 409 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 SHOC2Q9UQ13 582 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 RUVBL2Q9Y230 463 aaKnown RBP8.04□□□□□ -1.12
NEDD9-204ENST00000448183 CAMSAP1Q5T5Y3 1602 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 PIK3CDO00329 1044 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 RIPK2O43353 540 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 HBP1O60381 514 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 MED24O75448 989 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 SOAT1P35610 550 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 PNPLA4P41247 253 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 KHDRBS1Q07666 443 aaKnown RBP eCLIP8.04□□□□□ -1.12
NEDD9-204ENST00000448183 NFYCQ13952 458 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 SNX17Q15036 470 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 KCNT1Q5JUK3 1230 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 PDPK2PQ6A1A2 396 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 TAF2Q6P1X5 1199 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 HOMEZQ8IX15 550 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 DEFB107AQ8IZN7 70 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 FAM9CQ8IZT9 166 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 CRAMP1Q96RY5 1269 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 CNPY3Q9BT09 278 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 TMEM121Q9BTD3 319 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 CHST12Q9NRB3 414 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 SPASTQ9UBP0 616 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 ATF5Q9Y2D1 282 aaPredicted RBP8.04□□□□□ -1.12
NEDD9-204ENST00000448183 ACOT9Q9Y305 439 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 AAR2Q9Y312 384 aaKnown RBP8.04□□□□□ -1.12
NEDD9-204ENST00000448183 OVOS2A0A0G2JMS6 1433 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 OVOS2A0A0J9YW53 1432 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 OVOS2Q6IE36 1432 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 OGTO15294 1046 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 GUCA1CO95843 209 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 ALDH1A1P00352 501 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 MYCP01106 439 aaPredicted RBP8.04□□□□□ -1.12
NEDD9-204ENST00000448183 GH1P01241 217 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 ITGB3P05106 788 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 PYGMP11217 842 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 RGS2P41220 211 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 HPCAP84074 193 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 C2CD6Q53TS8 623 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 TMC3Q7Z5M5 1100 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 DCP1BQ8IZD4 617 aaKnown RBP8.04□□□□□ -1.12
NEDD9-204ENST00000448183 KYQ8NBH2 561 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 ZNF280CQ8ND82 737 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 MRPS26Q9BYN8 205 aaKnown RBP8.04□□□□□ -1.12
NEDD9-204ENST00000448183 PCDH9Q9HC56 1237 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 DDIT4Q9NX09 232 aa8.04□□□□□ -1.12
NEDD9-204ENST00000448183 SNTNA6NMZ2 147 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 M0QYT0 321 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 GAS2O43903 313 aaKnown RBP8.03□□□□□ -1.12
NEDD9-204ENST00000448183 TADA2AO75478 443 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 RBP1P09455 135 aa8.03□□□□□ -1.12
NEDD9-204ENST00000448183 RPL10AP62906 217 aaKnown RBP8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms