RNA–Protein interactions for RNA: ENST00000447376.1

SF3A1-204, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 418 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-204ENST00000447376 ASTLQ6HA08 431 aaPredicted RBP17.32■□□□□ 0.36
SF3A1-204ENST00000447376 TMEM270Q6UE05 265 aa17.32■□□□□ 0.36
SF3A1-204ENST00000447376 PAQR9Q6ZVX9 377 aa17.32■□□□□ 0.36
SF3A1-204ENST00000447376 TMEM150AQ86TG1 271 aa17.32■□□□□ 0.36
SF3A1-204ENST00000447376 AOPEPQ8N6M6 819 aa17.32■□□□□ 0.36
SF3A1-204ENST00000447376 WHAMMQ8TF30 809 aa17.32■□□□□ 0.36
SF3A1-204ENST00000447376 FUCA2Q9BTY2 467 aa17.32■□□□□ 0.36
SF3A1-204ENST00000447376 INTS2Q9H0H0 1204 aaKnown RBP17.32■□□□□ 0.36
SF3A1-204ENST00000447376 CSNK1G1Q9HCP0 422 aa17.32■□□□□ 0.36
SF3A1-204ENST00000447376 PNPLA8Q9NP80 782 aa17.32■□□□□ 0.36
SF3A1-204ENST00000447376 MRPS17Q9Y2R5 130 aaKnown RBP17.32■□□□□ 0.36
SF3A1-204ENST00000447376 PCDHB4Q9Y5E5 795 aa17.32■□□□□ 0.36
SF3A1-204ENST00000447376 NUP210Q8TEM1 1887 aaPredicted RBP17.32■□□□□ 0.36
SF3A1-204ENST00000447376 GTPBP10A4D1E9 387 aaKnown RBP17.31■□□□□ 0.36
SF3A1-204ENST00000447376 PRAMEF12O95522 483 aa17.31■□□□□ 0.36
SF3A1-204ENST00000447376 HDCP19113 662 aa17.31■□□□□ 0.36
SF3A1-204ENST00000447376 CLCN5P51795 746 aa17.31■□□□□ 0.36
SF3A1-204ENST00000447376 RAD23BP54727 409 aa17.31■□□□□ 0.36
SF3A1-204ENST00000447376 MFAP3P55082 362 aa17.31■□□□□ 0.36
SF3A1-204ENST00000447376 USP46P62068 366 aa17.31■□□□□ 0.36
SF3A1-204ENST00000447376 FCHO2Q0JRZ9 810 aa17.31■□□□□ 0.36
SF3A1-204ENST00000447376 ZNF268Q14587 947 aaPredicted RBP17.31■□□□□ 0.36
SF3A1-204ENST00000447376 PPP1R26Q5T8A7 1209 aaPredicted RBP17.31■□□□□ 0.36
SF3A1-204ENST00000447376 CDKAL1Q5VV42 579 aa17.31■□□□□ 0.36
SF3A1-204ENST00000447376 PHLDB3Q6NSJ2 640 aa17.31■□□□□ 0.36
SF3A1-204ENST00000447376 CLEC20AQ6ZU45 233 aa17.31■□□□□ 0.36
SF3A1-204ENST00000447376 ENOSF1Q7L5Y1 443 aa17.31■□□□□ 0.36
SF3A1-204ENST00000447376 GPIHBP1Q8IV16 184 aa17.31■□□□□ 0.36
SF3A1-204ENST00000447376 SLC4A11Q8NBS3 891 aa17.31■□□□□ 0.36
SF3A1-204ENST00000447376 TTC16Q8NEE8 873 aa17.31■□□□□ 0.36
SF3A1-204ENST00000447376 JAKMIP2Q96AA8 810 aa17.31■□□□□ 0.36
SF3A1-204ENST00000447376 SMOQ99835 787 aa17.31■□□□□ 0.36
SF3A1-204ENST00000447376 DUSP16Q9BY84 665 aa17.31■□□□□ 0.36
SF3A1-204ENST00000447376 NACA2Q9H009 215 aa17.31■□□□□ 0.36
SF3A1-204ENST00000447376 KCNH6Q9H252 994 aa17.31■□□□□ 0.36
SF3A1-204ENST00000447376 NDST4Q9H3R1 872 aa17.31■□□□□ 0.36
SF3A1-204ENST00000447376 TBC1D17Q9HA65 648 aa17.31■□□□□ 0.36
SF3A1-204ENST00000447376 TRPV5Q9NQA5 729 aa17.31■□□□□ 0.36
SF3A1-204ENST00000447376 MAN2B1O00754 1011 aa17.3■□□□□ 0.36
SF3A1-204ENST00000447376 TADA3O75528 432 aa17.3■□□□□ 0.36
SF3A1-204ENST00000447376 PDGFBP01127 241 aaPredicted RBP17.3■□□□□ 0.36
SF3A1-204ENST00000447376 PAEPP09466 180 aa17.3■□□□□ 0.36
SF3A1-204ENST00000447376 VDRP11473 427 aa17.3■□□□□ 0.36
SF3A1-204ENST00000447376 NUBP1P53384 320 aa17.3■□□□□ 0.36
SF3A1-204ENST00000447376 STILQ15468 1287 aa17.3■□□□□ 0.36
SF3A1-204ENST00000447376 EXOC3L4Q17RC7 722 aa17.3■□□□□ 0.36
SF3A1-204ENST00000447376 ARHGAP17Q68EM7 881 aa17.3■□□□□ 0.36
SF3A1-204ENST00000447376 C1orf228Q6PIY5 440 aa17.3■□□□□ 0.36
SF3A1-204ENST00000447376 POTEHQ6S545 545 aa17.3■□□□□ 0.36
SF3A1-204ENST00000447376 ZNF852Q6ZMS4 543 aa17.3■□□□□ 0.36
SF3A1-204ENST00000447376 DDX42Q86XP3 938 aaKnown RBP eCLIP17.3■□□□□ 0.36
SF3A1-204ENST00000447376 ARL14EPQ8N8R7 260 aaPredicted RBP17.3■□□□□ 0.36
SF3A1-204ENST00000447376 MSANTD3Q96H12 275 aa17.3■□□□□ 0.36
SF3A1-204ENST00000447376 SMG9Q9H0W8 520 aaKnown RBP17.3■□□□□ 0.36
SF3A1-204ENST00000447376 TLR8Q9NR97 1041 aaKnown RBP17.3■□□□□ 0.36
SF3A1-204ENST00000447376 MYH10P35580 1976 aa17.29■□□□□ 0.36
SF3A1-204ENST00000447376 NCANO14594 1321 aa17.29■□□□□ 0.36
SF3A1-204ENST00000447376 KRBA1A5PL33 1030 aa17.29■□□□□ 0.36
SF3A1-204ENST00000447376 C2orf78A6NCI8 922 aa17.29■□□□□ 0.36
SF3A1-204ENST00000447376 ZNF840PA6NDX5 716 aa17.29■□□□□ 0.36
SF3A1-204ENST00000447376 TNFRSF10BO14763 440 aa17.29■□□□□ 0.36
SF3A1-204ENST00000447376 NCAM2O15394 837 aa17.29■□□□□ 0.36
SF3A1-204ENST00000447376 GLULP15104 373 aa17.29■□□□□ 0.36
SF3A1-204ENST00000447376 AOC1P19801 751 aa17.29■□□□□ 0.36
SF3A1-204ENST00000447376 ACO1P21399 889 aaKnown RBP17.29■□□□□ 0.36
SF3A1-204ENST00000447376 AVPR2P30518 371 aa17.29■□□□□ 0.36
SF3A1-204ENST00000447376 KPNA1P52294 538 aaPredicted RBP17.29■□□□□ 0.36
SF3A1-204ENST00000447376 BCAT1P54687 386 aa17.29■□□□□ 0.36
SF3A1-204ENST00000447376 TRIM65Q6PJ69 517 aa17.29■□□□□ 0.36
SF3A1-204ENST00000447376 TPRG1Q6ZUI0 275 aa17.29■□□□□ 0.36
SF3A1-204ENST00000447376 RRAGAQ7L523 313 aa17.29■□□□□ 0.36
SF3A1-204ENST00000447376 SCAMP5Q8TAC9 235 aa17.29■□□□□ 0.36
SF3A1-204ENST00000447376 LMO3Q8TAP4 145 aa17.29■□□□□ 0.36
SF3A1-204ENST00000447376 USP13Q92995 863 aaPredicted RBP17.29■□□□□ 0.36
SF3A1-204ENST00000447376 NELL2Q99435 816 aa17.29■□□□□ 0.36
SF3A1-204ENST00000447376 CRACR2AQ9BSW2 395 aa17.29■□□□□ 0.36
SF3A1-204ENST00000447376 UBE2TQ9NPD8 197 aaPredicted RBP17.29■□□□□ 0.36
SF3A1-204ENST00000447376 HEBP1Q9NRV9 189 aa17.29■□□□□ 0.36
SF3A1-204ENST00000447376 TMEM30AQ9NV96 361 aa17.29■□□□□ 0.36
SF3A1-204ENST00000447376 KANSL1LA0AUZ9 987 aa17.28■□□□□ 0.36
SF3A1-204ENST00000447376 MBL2P11226 248 aaPredicted RBP17.28■□□□□ 0.36
SF3A1-204ENST00000447376 KRT5P13647 590 aa17.28■□□□□ 0.36
SF3A1-204ENST00000447376 STARD6P59095 220 aa17.28■□□□□ 0.36
SF3A1-204ENST00000447376 AMPD2Q01433 879 aa17.28■□□□□ 0.36
SF3A1-204ENST00000447376 BST2Q10589 180 aaKnown RBP17.28■□□□□ 0.36
SF3A1-204ENST00000447376 UBXN2BQ14CS0 331 aa17.28■□□□□ 0.36
SF3A1-204ENST00000447376 NCAPHQ15003 741 aa17.28■□□□□ 0.36
SF3A1-204ENST00000447376 GOLGA7BQ2TAP0 167 aa17.28■□□□□ 0.36
SF3A1-204ENST00000447376 FKBP15Q5T1M5 1219 aa17.28■□□□□ 0.36
SF3A1-204ENST00000447376 HECTD3Q5T447 861 aa17.28■□□□□ 0.36
SF3A1-204ENST00000447376 TADA2BQ86TJ2 420 aa17.28■□□□□ 0.36
SF3A1-204ENST00000447376 ANKRD52Q8NB46 1076 aa17.28■□□□□ 0.36
SF3A1-204ENST00000447376 RBBP8NLQ8NC74 664 aaPredicted RBP17.28■□□□□ 0.36
SF3A1-204ENST00000447376 ZMIZ2Q8NF64 920 aa17.28■□□□□ 0.36
SF3A1-204ENST00000447376 EXOC4Q96A65 974 aa17.28■□□□□ 0.36
SF3A1-204ENST00000447376 CYP2S1Q96SQ9 504 aa17.28■□□□□ 0.36
SF3A1-204ENST00000447376 UBXN6Q9BZV1 441 aa17.28■□□□□ 0.36
SF3A1-204ENST00000447376 C8orf33Q9H7E9 229 aaPredicted RBP17.28■□□□□ 0.36
SF3A1-204ENST00000447376 TAB2Q9NYJ8 693 aa17.28■□□□□ 0.36
SF3A1-204ENST00000447376 TSPAN16Q9UKR8 245 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms