RNA–Protein interactions for RNA: ENST00000439160.6

TCOF1-205, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,644 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-205ENST00000439160 SMAPO00193 183 aa12.78□□□□□ -0.36
TCOF1-205ENST00000439160 OPHN1O60890 802 aa12.78□□□□□ -0.36
TCOF1-205ENST00000439160 CAND2O75155 1236 aa12.78□□□□□ -0.36
TCOF1-205ENST00000439160 SASH3O75995 380 aa12.78□□□□□ -0.36
TCOF1-205ENST00000439160 TTC4O95801 387 aa12.78□□□□□ -0.36
TCOF1-205ENST00000439160 F9P00740 461 aa12.78□□□□□ -0.36
TCOF1-205ENST00000439160 HARS2P49590 506 aaKnown RBP12.78□□□□□ -0.36
TCOF1-205ENST00000439160 ZNF280AP59817 542 aaPredicted RBP12.78□□□□□ -0.36
TCOF1-205ENST00000439160 TWF1Q12792 350 aa12.78□□□□□ -0.36
TCOF1-205ENST00000439160 ZNF268Q14587 947 aaPredicted RBP12.78□□□□□ -0.36
TCOF1-205ENST00000439160 SNX17Q15036 470 aa12.78□□□□□ -0.36
TCOF1-205ENST00000439160 KCTD19Q17RG1 926 aaPredicted RBP12.78□□□□□ -0.36
TCOF1-205ENST00000439160 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.78□□□□□ -0.36
TCOF1-205ENST00000439160 LRRC6Q86X45 466 aa12.78□□□□□ -0.36
TCOF1-205ENST00000439160 STKLD1Q8NE28 680 aa12.78□□□□□ -0.36
TCOF1-205ENST00000439160 TRIM49D1C9J1S8 452 aa12.78□□□□□ -0.36
TCOF1-205ENST00000439160 SPAG6O75602 509 aa12.78□□□□□ -0.36
TCOF1-205ENST00000439160 SETSIPP0DME0 302 aa12.78□□□□□ -0.36
TCOF1-205ENST00000439160 KCNA2P16389 499 aa12.78□□□□□ -0.36
TCOF1-205ENST00000439160 HNRNPH3P31942 346 aaKnown RBP12.78□□□□□ -0.36
TCOF1-205ENST00000439160 AVENQ9NQS1 362 aaPredicted RBP12.78□□□□□ -0.36
TCOF1-205ENST00000439160 RPS6KL1Q9Y6S9 549 aa12.78□□□□□ -0.36
TCOF1-205ENST00000439160 GLTPD2A6NH11 291 aa12.77□□□□□ -0.36
TCOF1-205ENST00000439160 MTSS1O43312 755 aa12.77□□□□□ -0.36
TCOF1-205ENST00000439160 ZNF862O60290 1169 aa12.77□□□□□ -0.36
TCOF1-205ENST00000439160 PQBP1O60828 265 aaKnown RBP12.77□□□□□ -0.36
TCOF1-205ENST00000439160 LVRNQ6Q4G3 990 aa12.77□□□□□ -0.36
TCOF1-205ENST00000439160 PGLYRP2Q96PD5 576 aa12.77□□□□□ -0.36
TCOF1-205ENST00000439160 EGFL8Q99944 293 aa12.77□□□□□ -0.36
TCOF1-205ENST00000439160 DDX50Q9BQ39 737 aaKnown RBP12.77□□□□□ -0.36
TCOF1-205ENST00000439160 CEP41Q9BYV8 373 aa12.77□□□□□ -0.36
TCOF1-205ENST00000439160 WHRNQ9P202 907 aa12.77□□□□□ -0.36
TCOF1-205ENST00000439160 AFF4Q9UHB7 1163 aaKnown RBP12.77□□□□□ -0.36
TCOF1-205ENST00000439160 LRRC37A3O60309 1634 aa12.77□□□□□ -0.36
TCOF1-205ENST00000439160 NVLO15381 856 aaKnown RBP12.77□□□□□ -0.36
TCOF1-205ENST00000439160 CYBBP04839 570 aa12.77□□□□□ -0.36
TCOF1-205ENST00000439160 PAEPP09466 180 aa12.77□□□□□ -0.36
TCOF1-205ENST00000439160 SMIM10L2AP0DMW4 78 aa12.77□□□□□ -0.36
TCOF1-205ENST00000439160 SMIM10L2BP0DMW5 78 aa12.77□□□□□ -0.36
TCOF1-205ENST00000439160 CCDC130P13994 396 aa12.77□□□□□ -0.36
TCOF1-205ENST00000439160 KRT4P19013 534 aa12.77□□□□□ -0.36
TCOF1-205ENST00000439160 FMO1Q01740 532 aa12.77□□□□□ -0.36
TCOF1-205ENST00000439160 EFEMP1Q12805 493 aa12.77□□□□□ -0.36
TCOF1-205ENST00000439160 MAP2K5Q13163 448 aa12.77□□□□□ -0.36
TCOF1-205ENST00000439160 BFSP2Q13515 415 aa12.77□□□□□ -0.36
TCOF1-205ENST00000439160 PTGISQ16647 500 aa12.77□□□□□ -0.36
TCOF1-205ENST00000439160 DENND1BQ6P3S1 775 aa12.77□□□□□ -0.36
TCOF1-205ENST00000439160 GRAMD1AQ96CP6 724 aa12.77□□□□□ -0.36
TCOF1-205ENST00000439160 TSSK1BQ9BXA7 367 aa12.77□□□□□ -0.36
TCOF1-205ENST00000439160 CYP4F11Q9HBI6 524 aa12.77□□□□□ -0.36
TCOF1-205ENST00000439160 XAB2Q9HCS7 855 aaKnown RBP12.77□□□□□ -0.36
TCOF1-205ENST00000439160 CHST7Q9NS84 486 aa12.77□□□□□ -0.36
TCOF1-205ENST00000439160 MRPL42Q9Y6G3 142 aaKnown RBP12.77□□□□□ -0.36
TCOF1-205ENST00000439160 MIPP30301 263 aa12.77□□□□□ -0.37
TCOF1-205ENST00000439160 ERFP50548 548 aa12.77□□□□□ -0.37
TCOF1-205ENST00000439160 GEMIN4P57678 1058 aaKnown RBP12.77□□□□□ -0.37
TCOF1-205ENST00000439160 YWHAZP63104 245 aaKnown RBP12.77□□□□□ -0.37
TCOF1-205ENST00000439160 FSCBQ5H9T9 825 aa12.77□□□□□ -0.37
TCOF1-205ENST00000439160 DAB2IPQ5VWQ8 1189 aa12.77□□□□□ -0.37
TCOF1-205ENST00000439160 TMEM139Q8IV31 216 aa12.77□□□□□ -0.37
TCOF1-205ENST00000439160 SHCBP1Q8NEM2 672 aa12.77□□□□□ -0.37
TCOF1-205ENST00000439160 ADAM2Q99965 735 aa12.77□□□□□ -0.37
TCOF1-205ENST00000439160 BCAS3Q9H6U6 928 aa12.77□□□□□ -0.37
TCOF1-205ENST00000439160 RAB21Q9UL25 225 aa12.77□□□□□ -0.37
TCOF1-205ENST00000439160 SLC15A5A6NIM6 579 aa12.77□□□□□ -0.37
TCOF1-205ENST00000439160 BTBD19C9JJ37 291 aa12.77□□□□□ -0.37
TCOF1-205ENST00000439160 MARCKSL1P49006 195 aa12.77□□□□□ -0.37
TCOF1-205ENST00000439160 DNAJC3Q13217 504 aa12.77□□□□□ -0.37
TCOF1-205ENST00000439160 NAPEPLDQ6IQ20 393 aa12.77□□□□□ -0.37
TCOF1-205ENST00000439160 N4BP2L2Q92802 583 aaPredicted RBP12.77□□□□□ -0.37
TCOF1-205ENST00000439160 SEMA4DQ92854 862 aa12.77□□□□□ -0.37
TCOF1-205ENST00000439160 ULK4Q96C45 1275 aa12.77□□□□□ -0.37
TCOF1-205ENST00000439160 ZBTB10Q96DT7 871 aa12.77□□□□□ -0.37
TCOF1-205ENST00000439160 WNK4Q96J92 1243 aa12.77□□□□□ -0.37
TCOF1-205ENST00000439160 RMDN2Q96LZ7 410 aa12.77□□□□□ -0.37
TCOF1-205ENST00000439160 DCLK3Q9C098 648 aa12.77□□□□□ -0.37
TCOF1-205ENST00000439160 SUN2Q9UH99 717 aa12.77□□□□□ -0.37
TCOF1-205ENST00000439160 ARL2BPQ9Y2Y0 163 aa12.77□□□□□ -0.37
TCOF1-205ENST00000439160 CNTNAP2Q9UHC6 1331 aa12.76□□□□□ -0.37
TCOF1-205ENST00000439160 SNED1Q8TER0 1413 aa12.76□□□□□ -0.37
TCOF1-205ENST00000439160 PPFIA2O75334 1257 aa12.76□□□□□ -0.37
TCOF1-205ENST00000439160 JCHAINP01591 159 aa12.76□□□□□ -0.37
TCOF1-205ENST00000439160 CYP2F1P24903 491 aa12.76□□□□□ -0.37
TCOF1-205ENST00000439160 SPRP35270 261 aaPredicted RBP12.76□□□□□ -0.37
TCOF1-205ENST00000439160 RPL21P46778 160 aaKnown RBP12.76□□□□□ -0.37
TCOF1-205ENST00000439160 SERPINB9P50453 376 aa12.76□□□□□ -0.37
TCOF1-205ENST00000439160 RTP1P59025 263 aa12.76□□□□□ -0.37
TCOF1-205ENST00000439160 UGP2Q16851 508 aa12.76□□□□□ -0.37
TCOF1-205ENST00000439160 C3orf20Q8ND61 904 aa12.76□□□□□ -0.37
TCOF1-205ENST00000439160 SERPINB12Q96P63 405 aa12.76□□□□□ -0.37
TCOF1-205ENST00000439160 GPR20Q99678 358 aa12.76□□□□□ -0.37
TCOF1-205ENST00000439160 KCND1Q9NSA2 647 aa12.76□□□□□ -0.37
TCOF1-205ENST00000439160 ARHGEF38Q9NXL2 777 aa12.76□□□□□ -0.37
TCOF1-205ENST00000439160 ZNF214Q9UL59 606 aaPredicted RBP12.76□□□□□ -0.37
TCOF1-205ENST00000439160 MEFVO15553 781 aaPredicted RBP12.76□□□□□ -0.37
TCOF1-205ENST00000439160 TLR2O60603 784 aa12.76□□□□□ -0.37
TCOF1-205ENST00000439160 ZNF189O75820 626 aaPredicted RBP12.76□□□□□ -0.37
TCOF1-205ENST00000439160 GFAPP14136 432 aa12.76□□□□□ -0.37
TCOF1-205ENST00000439160 RFC1P35251 1148 aaPredicted RBP12.76□□□□□ -0.37
TCOF1-205ENST00000439160 VCPP55072 806 aaKnown RBP12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms