RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 ACVR2BQ13705 512 aa8.77□□□□□ -1.01
CD44-208ENST00000428726 KRT81Q14533 505 aa8.77□□□□□ -1.01
CD44-208ENST00000428726 MAMDC4Q6UXC1 1216 aa8.77□□□□□ -1.01
CD44-208ENST00000428726 TTC30AQ86WT1 665 aa8.77□□□□□ -1.01
CD44-208ENST00000428726 C12orf50Q8NA57 414 aaPredicted RBP8.77□□□□□ -1.01
CD44-208ENST00000428726 ARRDC4Q8NCT1 418 aa8.77□□□□□ -1.01
CD44-208ENST00000428726 PRCCQ92733 491 aaPredicted RBP8.77□□□□□ -1.01
CD44-208ENST00000428726 MAK16Q9BXY0 300 aaKnown RBP8.77□□□□□ -1.01
CD44-208ENST00000428726 TMEM134Q9H6X4 195 aa8.77□□□□□ -1.01
CD44-208ENST00000428726 ZNF395Q9H8N7 513 aaPredicted RBP8.77□□□□□ -1.01
CD44-208ENST00000428726 ETNK2Q9NVF9 386 aa8.77□□□□□ -1.01
CD44-208ENST00000428726 UBP1Q9NZI7 540 aa8.77□□□□□ -1.01
CD44-208ENST00000428726 USP18Q9UMW8 372 aa8.77□□□□□ -1.01
CD44-208ENST00000428726 LCTP09848 1927 aa8.77□□□□□ -1.01
CD44-208ENST00000428726 TRIP12Q14669 1992 aaPredicted RBP8.76□□□□□ -1.01
CD44-208ENST00000428726 SRRM3A6NNA2 597 aaPredicted RBP8.76□□□□□ -1.01
CD44-208ENST00000428726 GOLGA8TH3BQL2 631 aa8.76□□□□□ -1.01
CD44-208ENST00000428726 KCNN4O15554 427 aa8.76□□□□□ -1.01
CD44-208ENST00000428726 LIASO43766 372 aa8.76□□□□□ -1.01
CD44-208ENST00000428726 FGFR1P11362 822 aa8.76□□□□□ -1.01
CD44-208ENST00000428726 EFNA5P52803 228 aa8.76□□□□□ -1.01
CD44-208ENST00000428726 EIF3EP60228 445 aaKnown RBP8.76□□□□□ -1.01
CD44-208ENST00000428726 FAM219BQ5XKK7 198 aa8.76□□□□□ -1.01
CD44-208ENST00000428726 TRIM72Q6ZMU5 477 aa8.76□□□□□ -1.01
CD44-208ENST00000428726 CACNA2D3Q8IZS8 1091 aa8.76□□□□□ -1.01
CD44-208ENST00000428726 MAIP1Q8WWC4 291 aa8.76□□□□□ -1.01
CD44-208ENST00000428726 EDEM1Q92611 657 aa8.76□□□□□ -1.01
CD44-208ENST00000428726 KCNK16Q96T55 309 aa8.76□□□□□ -1.01
CD44-208ENST00000428726 FAM129AQ9BZQ8 928 aa8.76□□□□□ -1.01
CD44-208ENST00000428726 FZD8Q9H461 694 aa8.76□□□□□ -1.01
CD44-208ENST00000428726 IP6K2Q9UHH9 426 aa8.76□□□□□ -1.01
CD44-208ENST00000428726 A8MUI8 341 aa8.76□□□□□ -1.01
CD44-208ENST00000428726 TMEM63AO94886 807 aa8.76□□□□□ -1.01
CD44-208ENST00000428726 TGFB3P10600 412 aa8.76□□□□□ -1.01
CD44-208ENST00000428726 KITP10721 976 aa8.76□□□□□ -1.01
CD44-208ENST00000428726 TBXAS1P24557 533 aaPredicted RBP8.76□□□□□ -1.01
CD44-208ENST00000428726 ZNF157P51786 506 aaPredicted RBP8.76□□□□□ -1.01
CD44-208ENST00000428726 ACCSLQ4AC99 568 aa8.76□□□□□ -1.01
CD44-208ENST00000428726 MDH1BQ5I0G3 518 aa8.76□□□□□ -1.01
CD44-208ENST00000428726 PPP1R2P3Q6NXS1 205 aa8.76□□□□□ -1.01
CD44-208ENST00000428726 CASC4Q6P4E1 433 aa8.76□□□□□ -1.01
CD44-208ENST00000428726 HOOK3Q86VS8 718 aa8.76□□□□□ -1.01
CD44-208ENST00000428726 XYLT1Q86Y38 959 aa8.76□□□□□ -1.01
CD44-208ENST00000428726 SLC2A14Q8TDB8 520 aa8.76□□□□□ -1.01
CD44-208ENST00000428726 FAM172AQ8WUF8 416 aa8.76□□□□□ -1.01
CD44-208ENST00000428726 N4BP2L2Q92802 583 aaPredicted RBP8.76□□□□□ -1.01
CD44-208ENST00000428726 SLC13A1Q9BZW2 595 aa8.76□□□□□ -1.01
CD44-208ENST00000428726 LRRC19Q9H756 370 aa8.76□□□□□ -1.01
CD44-208ENST00000428726 RAB6BQ9NRW1 208 aa8.76□□□□□ -1.01
CD44-208ENST00000428726 SLC5A4Q9NY91 659 aa8.76□□□□□ -1.01
CD44-208ENST00000428726 CHD7Q9P2D1 2997 aa8.76□□□□□ -1.01
CD44-208ENST00000428726 WDR90Q96KV7 1748 aa8.76□□□□□ -1.01
CD44-208ENST00000428726 SIP14410 1827 aa8.75□□□□□ -1.01
CD44-208ENST00000428726 DNAJC25-GNG10A0A024R161 153 aa8.75□□□□□ -1.01
CD44-208ENST00000428726 IGF2BP3O00425 579 aaKnown RBP eCLIP8.75□□□□□ -1.01
CD44-208ENST00000428726 GABBR2O75899 941 aa8.75□□□□□ -1.01
CD44-208ENST00000428726 RNF8O76064 485 aa8.75□□□□□ -1.01
CD44-208ENST00000428726 TTC4O95801 387 aa8.75□□□□□ -1.01
CD44-208ENST00000428726 POMCP01189 267 aa8.75□□□□□ -1.01
CD44-208ENST00000428726 NUDT17P0C025 328 aa8.75□□□□□ -1.01
CD44-208ENST00000428726 SAT1P21673 171 aa8.75□□□□□ -1.01
CD44-208ENST00000428726 RBL1P28749 1068 aa8.75□□□□□ -1.01
CD44-208ENST00000428726 STX2P32856 288 aa8.75□□□□□ -1.01
CD44-208ENST00000428726 RPL22P35268 128 aaKnown RBP8.75□□□□□ -1.01
CD44-208ENST00000428726 GBE1Q04446 702 aa8.75□□□□□ -1.01
CD44-208ENST00000428726 KLF1Q13351 362 aaPredicted RBP8.75□□□□□ -1.01
CD44-208ENST00000428726 SDHAF4Q5VUM1 108 aa8.75□□□□□ -1.01
CD44-208ENST00000428726 TSHZ1Q6ZSZ6 1077 aa8.75□□□□□ -1.01
CD44-208ENST00000428726 C3orf62Q6ZUJ4 267 aa8.75□□□□□ -1.01
CD44-208ENST00000428726 FASTKD5Q7L8L6 764 aaKnown RBP8.75□□□□□ -1.01
CD44-208ENST00000428726 GPR152Q8TDT2 470 aa8.75□□□□□ -1.01
CD44-208ENST00000428726 USP6NLQ92738 828 aa8.75□□□□□ -1.01
CD44-208ENST00000428726 MAML3Q96JK9 1138 aa8.75□□□□□ -1.01
CD44-208ENST00000428726 MS4A4AQ96JQ5 239 aa8.75□□□□□ -1.01
CD44-208ENST00000428726 PTPRHQ9HD43 1115 aa8.75□□□□□ -1.01
CD44-208ENST00000428726 MARCOQ9UEW3 520 aaPredicted RBP8.75□□□□□ -1.01
CD44-208ENST00000428726 PPME1Q9Y570 386 aa8.75□□□□□ -1.01
CD44-208ENST00000428726 hCG_1818297A0A087WSY0 165 aa8.75□□□□□ -1.01
CD44-208ENST00000428726 CXCL11O14625 94 aa8.75□□□□□ -1.01
CD44-208ENST00000428726 TRAPPC3O43617 180 aa8.75□□□□□ -1.01
CD44-208ENST00000428726 RARGP13631 454 aa8.75□□□□□ -1.01
CD44-208ENST00000428726 CA4P22748 312 aa8.75□□□□□ -1.01
CD44-208ENST00000428726 AMPD1P23109 780 aa8.75□□□□□ -1.01
CD44-208ENST00000428726 HOXA11P31270 313 aaPredicted RBP8.75□□□□□ -1.01
CD44-208ENST00000428726 CDKN2BP42772 138 aa8.75□□□□□ -1.01
CD44-208ENST00000428726 MYO1EQ12965 1108 aa8.75□□□□□ -1.01
CD44-208ENST00000428726 PPIL2Q13356 520 aa8.75□□□□□ -1.01
CD44-208ENST00000428726 TAF1CQ15572 869 aaPredicted RBP8.75□□□□□ -1.01
CD44-208ENST00000428726 ZNF449Q6P9G9 518 aa8.75□□□□□ -1.01
CD44-208ENST00000428726 ZPBP2Q6X784 338 aa8.75□□□□□ -1.01
CD44-208ENST00000428726 HFE2Q6ZVN8 426 aa8.75□□□□□ -1.01
CD44-208ENST00000428726 CROCCP2Q86T23 111 aa8.75□□□□□ -1.01
CD44-208ENST00000428726 CCNYQ8ND76 341 aa8.75□□□□□ -1.01
CD44-208ENST00000428726 FBXO36Q8NEA4 188 aa8.75□□□□□ -1.01
CD44-208ENST00000428726 GIMAP7Q8NHV1 300 aa8.75□□□□□ -1.01
CD44-208ENST00000428726 SLCO2A1Q92959 643 aa8.75□□□□□ -1.01
CD44-208ENST00000428726 WNT8BQ93098 351 aa8.75□□□□□ -1.01
CD44-208ENST00000428726 VCPIP1Q96JH7 1222 aa8.75□□□□□ -1.01
CD44-208ENST00000428726 LGMNQ99538 433 aa8.75□□□□□ -1.01
CD44-208ENST00000428726 TINF2Q9BSI4 451 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms