RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 VNN1O95497 513 aa4.94□□□□□ -1.62
USP40-204ENST00000427947 IL6RP08887 468 aaPredicted RBP4.94□□□□□ -1.62
USP40-204ENST00000427947 HGFP14210 728 aa4.94□□□□□ -1.62
USP40-204ENST00000427947 ZFXP17010 805 aaPredicted RBP4.94□□□□□ -1.62
USP40-204ENST00000427947 ADRA1BP35368 520 aa4.94□□□□□ -1.62
USP40-204ENST00000427947 PPM1AP35813 382 aa4.94□□□□□ -1.62
USP40-204ENST00000427947 LIPAP38571 399 aa4.94□□□□□ -1.62
USP40-204ENST00000427947 PLA2G5P39877 138 aa4.94□□□□□ -1.62
USP40-204ENST00000427947 HSPA7P48741 367 aa4.94□□□□□ -1.62
USP40-204ENST00000427947 MTHFSP49914 203 aa4.94□□□□□ -1.62
USP40-204ENST00000427947 BCAT1P54687 386 aa4.94□□□□□ -1.62
USP40-204ENST00000427947 BMPR2Q13873 1038 aa4.94□□□□□ -1.62
USP40-204ENST00000427947 MORC3Q14149 939 aa4.94□□□□□ -1.62
USP40-204ENST00000427947 SLC9A4Q6AI14 798 aa4.94□□□□□ -1.62
USP40-204ENST00000427947 FBXO38Q6PIJ6 1188 aa4.94□□□□□ -1.62
USP40-204ENST00000427947 C1orf228Q6PIY5 440 aa4.94□□□□□ -1.62
USP40-204ENST00000427947 CRTC1Q6UUV9 634 aa4.94□□□□□ -1.62
USP40-204ENST00000427947 KRT28Q7Z3Y7 464 aa4.94□□□□□ -1.62
USP40-204ENST00000427947 LDLRAD3Q86YD5 345 aa4.94□□□□□ -1.62
USP40-204ENST00000427947 AMER2Q8N7J2 671 aa4.94□□□□□ -1.62
USP40-204ENST00000427947 VPS37AQ8NEZ2 397 aa4.94□□□□□ -1.62
USP40-204ENST00000427947 XAGE5Q8WWM1 108 aa4.94□□□□□ -1.62
USP40-204ENST00000427947 RFKQ969G6 155 aa4.94□□□□□ -1.62
USP40-204ENST00000427947 ZBTB45Q96K62 511 aaPredicted RBP4.94□□□□□ -1.62
USP40-204ENST00000427947 C17orf80Q9BSJ5 609 aa4.94□□□□□ -1.62
USP40-204ENST00000427947 PLCB1Q9NQ66 1216 aa4.94□□□□□ -1.62
USP40-204ENST00000427947 CAPN11Q9UMQ6 739 aa4.94□□□□□ -1.62
USP40-204ENST00000427947 HPSEQ9Y251 543 aa4.94□□□□□ -1.62
USP40-204ENST00000427947 ABHD14A-ACY1A0A1B0GW23 586 aa4.93□□□□□ -1.62
USP40-204ENST00000427947 FAM234BA2RU67 622 aa4.93□□□□□ -1.62
USP40-204ENST00000427947 CYR61O00622 381 aa4.93□□□□□ -1.62
USP40-204ENST00000427947 FOXN1O15353 648 aa4.93□□□□□ -1.62
USP40-204ENST00000427947 RAMP2O60895 175 aa4.93□□□□□ -1.62
USP40-204ENST00000427947 GCP02774 474 aa4.93□□□□□ -1.62
USP40-204ENST00000427947 EPHA3P29320 983 aa4.93□□□□□ -1.62
USP40-204ENST00000427947 UQCRC1P31930 480 aa4.93□□□□□ -1.62
USP40-204ENST00000427947 ATICP31939 592 aa4.93□□□□□ -1.62
USP40-204ENST00000427947 GRIA3P42263 894 aa4.93□□□□□ -1.62
USP40-204ENST00000427947 PGDP52209 483 aa4.93□□□□□ -1.62
USP40-204ENST00000427947 COPAP53621 1224 aa4.93□□□□□ -1.62
USP40-204ENST00000427947 STARD3Q14849 445 aa4.93□□□□□ -1.62
USP40-204ENST00000427947 MPEG1Q2M385 716 aa4.93□□□□□ -1.62
USP40-204ENST00000427947 MZT2AQ6P582 158 aa4.93□□□□□ -1.62
USP40-204ENST00000427947 MRGPRGQ86SM5 289 aa4.93□□□□□ -1.62
USP40-204ENST00000427947 CAND1Q86VP6 1230 aaKnown RBP4.93□□□□□ -1.62
USP40-204ENST00000427947 LRRC71Q8N4P6 559 aa4.93□□□□□ -1.62
USP40-204ENST00000427947 SLC16A11Q8NCK7 471 aa4.93□□□□□ -1.62
USP40-204ENST00000427947 SLC9A6Q92581 669 aa4.93□□□□□ -1.62
USP40-204ENST00000427947 EIF2AQ9BY44 585 aaKnown RBP4.93□□□□□ -1.62
USP40-204ENST00000427947 PCED1AQ9H1Q7 454 aa4.93□□□□□ -1.62
USP40-204ENST00000427947 SLC25A32Q9H2D1 315 aa4.93□□□□□ -1.62
USP40-204ENST00000427947 DNAJB11Q9UBS4 358 aa4.93□□□□□ -1.62
USP40-204ENST00000427947 PACSIN3Q9UKS6 424 aa4.93□□□□□ -1.62
USP40-204ENST00000427947 LRCH1Q9Y2L9 728 aa4.93□□□□□ -1.62
USP40-204ENST00000427947 COMMD10Q9Y6G5 202 aa4.93□□□□□ -1.62
USP40-204ENST00000427947 CCDC151A5D8V7 595 aa4.92□□□□□ -1.62
USP40-204ENST00000427947 ZAR1LA6NP61 321 aa4.92□□□□□ -1.62
USP40-204ENST00000427947 LINC00473A8K010 186 aa4.92□□□□□ -1.62
USP40-204ENST00000427947 PODXLO00592 558 aa4.92□□□□□ -1.62
USP40-204ENST00000427947 ORC4O43929 436 aa4.92□□□□□ -1.62
USP40-204ENST00000427947 TTLL1O95922 423 aa4.92□□□□□ -1.62
USP40-204ENST00000427947 LDHAP00338 332 aaKnown RBP4.92□□□□□ -1.62
USP40-204ENST00000427947 EBLN1P0CF75 366 aa4.92□□□□□ -1.62
USP40-204ENST00000427947 IDEP14735 1019 aa4.92□□□□□ -1.62
USP40-204ENST00000427947 GABRB3P28472 473 aa4.92□□□□□ -1.62
USP40-204ENST00000427947 NTSR1P30989 418 aa4.92□□□□□ -1.62
USP40-204ENST00000427947 PDE1AP54750 535 aa4.92□□□□□ -1.62
USP40-204ENST00000427947 GRM1Q13255 1194 aa4.92□□□□□ -1.62
USP40-204ENST00000427947 PLAC9Q5JTB6 97 aa4.92□□□□□ -1.62
USP40-204ENST00000427947 C10orf62Q5T681 223 aaPredicted RBP4.92□□□□□ -1.62
USP40-204ENST00000427947 MANEALQ5VSG8 457 aa4.92□□□□□ -1.62
USP40-204ENST00000427947 SYTL1Q8IYJ3 562 aa4.92□□□□□ -1.62
USP40-204ENST00000427947 GLIS1Q8NBF1 620 aa4.92□□□□□ -1.62
USP40-204ENST00000427947 SOCS4Q8WXH5 440 aa4.92□□□□□ -1.62
USP40-204ENST00000427947 C18orf8Q96DM3 657 aa4.92□□□□□ -1.62
USP40-204ENST00000427947 ZNF668Q96K58 619 aaPredicted RBP4.92□□□□□ -1.62
USP40-204ENST00000427947 SNX27Q96L92 541 aa4.92□□□□□ -1.62
USP40-204ENST00000427947 DPCDQ9BVM2 203 aaPredicted RBP4.92□□□□□ -1.62
USP40-204ENST00000427947 VN1R3Q9BXE9 311 aa4.92□□□□□ -1.62
USP40-204ENST00000427947 DDX24Q9GZR7 859 aaKnown RBP eCLIP4.92□□□□□ -1.62
USP40-204ENST00000427947 ARHGEF3Q9NR81 526 aa4.92□□□□□ -1.62
USP40-204ENST00000427947 FOXJ2Q9P0K8 574 aa4.92□□□□□ -1.62
USP40-204ENST00000427947 CCNL1Q9UK58 526 aaPredicted RBP4.92□□□□□ -1.62
USP40-204ENST00000427947 MAGED2Q9UNF1 606 aaPredicted RBP4.92□□□□□ -1.62
USP40-204ENST00000427947 USP22Q9UPT9 525 aa4.92□□□□□ -1.62
USP40-204ENST00000427947 DRG1Q9Y295 367 aaKnown RBP4.92□□□□□ -1.62
USP40-204ENST00000427947 A0A087X1B8 175 aa4.91□□□□□ -1.62
USP40-204ENST00000427947 F5H423 210 aaPredicted RBP4.91□□□□□ -1.62
USP40-204ENST00000427947 AGPSO00116 658 aa4.91□□□□□ -1.62
USP40-204ENST00000427947 COQ9O75208 318 aa4.91□□□□□ -1.62
USP40-204ENST00000427947 ONECUT2O95948 504 aa4.91□□□□□ -1.62
USP40-204ENST00000427947 TYRP1P17643 537 aa4.91□□□□□ -1.62
USP40-204ENST00000427947 YY1P25490 414 aa4.91□□□□□ -1.62
USP40-204ENST00000427947 PCSK6P29122 969 aa4.91□□□□□ -1.62
USP40-204ENST00000427947 CXCR5P32302 372 aa4.91□□□□□ -1.62
USP40-204ENST00000427947 IL6STP40189 918 aaPredicted RBP4.91□□□□□ -1.62
USP40-204ENST00000427947 TECP42680 631 aa4.91□□□□□ -1.62
USP40-204ENST00000427947 ALDH9A1P49189 494 aa4.91□□□□□ -1.62
USP40-204ENST00000427947 GATMP50440 423 aa4.91□□□□□ -1.62
USP40-204ENST00000427947 INHBCP55103 352 aa4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms