RNA–Protein interactions for RNA: ENST00000421223.5

DDX56-203, Transcript of DEAD-box helicase 56, humanhuman

TSL 2

Gene DDX56, Length 3,028 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-203ENST00000421223 CROCCP2Q86T23 111 aa11.46□□□□□ -0.57
DDX56-203ENST00000421223 TLK2Q86UE8 772 aa11.46□□□□□ -0.57
DDX56-203ENST00000421223 TTC30AQ86WT1 665 aa11.46□□□□□ -0.57
DDX56-203ENST00000421223 ZCCHC9Q8N567 271 aaKnown RBP11.46□□□□□ -0.57
DDX56-203ENST00000421223 RNF169Q8NCN4 708 aa11.46□□□□□ -0.57
DDX56-203ENST00000421223 BEST2Q8NFU1 509 aa11.46□□□□□ -0.57
DDX56-203ENST00000421223 CXorf38Q8TB03 319 aa11.46□□□□□ -0.57
DDX56-203ENST00000421223 PYROXD1Q8WU10 500 aa11.46□□□□□ -0.57
DDX56-203ENST00000421223 FAM172AQ8WUF8 416 aa11.46□□□□□ -0.57
DDX56-203ENST00000421223 P3H4Q92791 437 aa11.46□□□□□ -0.57
DDX56-203ENST00000421223 NFKBIZQ9BYH8 718 aa11.46□□□□□ -0.57
DDX56-203ENST00000421223 NKIRAS1Q9NYS0 192 aa11.46□□□□□ -0.57
DDX56-203ENST00000421223 CTSHP09668 335 aa11.46□□□□□ -0.58
DDX56-203ENST00000421223 RARBP10826 455 aa11.46□□□□□ -0.58
DDX56-203ENST00000421223 TFE3P19532 575 aaPredicted RBP11.46□□□□□ -0.58
DDX56-203ENST00000421223 ACAT1P24752 427 aaKnown RBP11.46□□□□□ -0.58
DDX56-203ENST00000421223 SDC4P31431 198 aa11.46□□□□□ -0.58
DDX56-203ENST00000421223 OASLQ15646 514 aaKnown RBP11.46□□□□□ -0.58
DDX56-203ENST00000421223 SMAD1Q15797 465 aaKnown RBP11.46□□□□□ -0.58
DDX56-203ENST00000421223 HIF1AQ16665 826 aa11.46□□□□□ -0.58
DDX56-203ENST00000421223 FAM47CQ5HY64 1035 aa11.46□□□□□ -0.58
DDX56-203ENST00000421223 SPRYD7Q5W111 196 aa11.46□□□□□ -0.58
DDX56-203ENST00000421223 OLFML2BQ68BL8 750 aa11.46□□□□□ -0.58
DDX56-203ENST00000421223 TWF2Q6IBS0 349 aaKnown RBP11.46□□□□□ -0.58
DDX56-203ENST00000421223 NOTUMQ6P988 496 aa11.46□□□□□ -0.58
DDX56-203ENST00000421223 CENPUQ71F23 418 aa11.46□□□□□ -0.58
DDX56-203ENST00000421223 PALM2Q8IXS6 379 aa11.46□□□□□ -0.58
DDX56-203ENST00000421223 ATXN2LQ8WWM7 1075 aaKnown RBP11.46□□□□□ -0.58
DDX56-203ENST00000421223 FLRT1Q9NZU1 646 aa11.46□□□□□ -0.58
DDX56-203ENST00000421223 NR2E3Q9Y5X4 410 aa11.46□□□□□ -0.58
DDX56-203ENST00000421223 GRM5P41594 1212 aa11.45□□□□□ -0.58
DDX56-203ENST00000421223 COPS2P61201 443 aa11.45□□□□□ -0.58
DDX56-203ENST00000421223 HIC1Q14526 733 aa11.45□□□□□ -0.58
DDX56-203ENST00000421223 EFTUD2Q15029 972 aaKnown RBP eCLIP11.45□□□□□ -0.587e-7■■■■□ 22.7
DDX56-203ENST00000421223 TAF1CQ15572 869 aaPredicted RBP11.45□□□□□ -0.58
DDX56-203ENST00000421223 IQSEC1Q6DN90 963 aa11.45□□□□□ -0.58
DDX56-203ENST00000421223 LINC01465Q8N7H1 131 aa11.45□□□□□ -0.58
DDX56-203ENST00000421223 CCDC197Q8NCU1 140 aa11.45□□□□□ -0.58
DDX56-203ENST00000421223 CHMP2BQ9UQN3 213 aa11.45□□□□□ -0.58
DDX56-203ENST00000421223 C2CD2Q9Y426 696 aa11.45□□□□□ -0.58
DDX56-203ENST00000421223 DOCK3Q8IZD9 2030 aa11.45□□□□□ -0.58
DDX56-203ENST00000421223 WDR91A4D1P6 747 aa11.45□□□□□ -0.58
DDX56-203ENST00000421223 C3orf70A6NLC5 250 aaPredicted RBP11.45□□□□□ -0.58
DDX56-203ENST00000421223 CDH16O75309 829 aa11.45□□□□□ -0.58
DDX56-203ENST00000421223 AVILO75366 819 aa11.45□□□□□ -0.58
DDX56-203ENST00000421223 ATP5DP30049 168 aa11.45□□□□□ -0.58
DDX56-203ENST00000421223 GRB14Q14449 540 aa11.45□□□□□ -0.58
DDX56-203ENST00000421223 PKN2Q16513 984 aaKnown RBP11.45□□□□□ -0.58
DDX56-203ENST00000421223 CA9Q16790 459 aa11.45□□□□□ -0.58
DDX56-203ENST00000421223 SPRED3Q2MJR0 410 aa11.45□□□□□ -0.58
DDX56-203ENST00000421223 MSS51Q4VC12 460 aa11.45□□□□□ -0.58
DDX56-203ENST00000421223 FAM133BQ5BKY9 247 aaKnown RBP11.45□□□□□ -0.58
DDX56-203ENST00000421223 FNBP1LQ5T0N5 605 aa11.45□□□□□ -0.58
DDX56-203ENST00000421223 C3orf62Q6ZUJ4 267 aa11.45□□□□□ -0.58
DDX56-203ENST00000421223 MCRS1Q96EZ8 462 aa11.45□□□□□ -0.58
DDX56-203ENST00000421223 CNPY3Q9BT09 278 aa11.45□□□□□ -0.58
DDX56-203ENST00000421223 SNX25Q9H3E2 840 aa11.45□□□□□ -0.58
DDX56-203ENST00000421223 DHX35Q9H5Z1 703 aaKnown RBP11.45□□□□□ -0.58
DDX56-203ENST00000421223 XPO7Q9UIA9 1087 aaKnown RBP11.45□□□□□ -0.58
DDX56-203ENST00000421223 KCNN4O15554 427 aa11.44□□□□□ -0.58
DDX56-203ENST00000421223 RDXP35241 583 aaKnown RBP11.44□□□□□ -0.58
DDX56-203ENST00000421223 GNL1P36915 607 aaPredicted RBP11.44□□□□□ -0.58
DDX56-203ENST00000421223 ZNF143P52747 638 aaPredicted RBP11.44□□□□□ -0.58
DDX56-203ENST00000421223 MFSD10Q14728 455 aa11.44□□□□□ -0.58
DDX56-203ENST00000421223 LCLAT1Q6UWP7 414 aa11.44□□□□□ -0.58
DDX56-203ENST00000421223 VSTM1Q6UX27 236 aa11.44□□□□□ -0.58
DDX56-203ENST00000421223 BBS12Q6ZW61 710 aa11.44□□□□□ -0.58
DDX56-203ENST00000421223 NIPA2Q8N8Q9 360 aa11.44□□□□□ -0.58
DDX56-203ENST00000421223 SLC35B2Q8TB61 432 aa11.44□□□□□ -0.58
DDX56-203ENST00000421223 CCHCR1Q8TD31 782 aa11.44□□□□□ -0.58
DDX56-203ENST00000421223 GTF3C2Q8WUA4 911 aaPredicted RBP11.44□□□□□ -0.58
DDX56-203ENST00000421223 ZFP42Q96MM3 310 aa11.44□□□□□ -0.58
DDX56-203ENST00000421223 TIMM13Q9Y5L4 95 aaPredicted RBP11.44□□□□□ -0.58
DDX56-203ENST00000421223 ITGAVP06756 1048 aa11.44□□□□□ -0.58
DDX56-203ENST00000421223 PFKMP08237 780 aa11.44□□□□□ -0.58
DDX56-203ENST00000421223 C6orf222P0C671 652 aaPredicted RBP11.44□□□□□ -0.58
DDX56-203ENST00000421223 IGFBP6P24592 240 aaPredicted RBP11.44□□□□□ -0.58
DDX56-203ENST00000421223 ZNF157P51786 506 aaPredicted RBP11.44□□□□□ -0.58
DDX56-203ENST00000421223 BCAR1P56945 870 aa11.44□□□□□ -0.58
DDX56-203ENST00000421223 POU5F1BQ06416 359 aa11.44□□□□□ -0.58
DDX56-203ENST00000421223 STAT4Q14765 748 aa11.44□□□□□ -0.58
DDX56-203ENST00000421223 SOWAHAQ2M3V2 549 aa11.44□□□□□ -0.58
DDX56-203ENST00000421223 RNASEH2BQ5TBB1 312 aaKnown RBP11.44□□□□□ -0.58
DDX56-203ENST00000421223 POLNQ7Z5Q5 900 aa11.44□□□□□ -0.58
DDX56-203ENST00000421223 ANKRD23Q86SG2 305 aa11.44□□□□□ -0.58
DDX56-203ENST00000421223 ZNF410Q86VK4 478 aa11.44□□□□□ -0.58
DDX56-203ENST00000421223 SPATS2Q86XZ4 545 aaKnown RBP11.44□□□□□ -0.58
DDX56-203ENST00000421223 ANKS4BQ8N8V4 417 aa11.44□□□□□ -0.58
DDX56-203ENST00000421223 AP5M1Q9H0R1 490 aa11.44□□□□□ -0.58
DDX56-203ENST00000421223 ADAMTS10Q9H324 1103 aa11.44□□□□□ -0.58
DDX56-203ENST00000421223 PCDH9Q9HC56 1237 aa11.44□□□□□ -0.58
DDX56-203ENST00000421223 RAB6BQ9NRW1 208 aa11.44□□□□□ -0.58
DDX56-203ENST00000421223 SLC5A4Q9NY91 659 aa11.44□□□□□ -0.58
DDX56-203ENST00000421223 GJD2Q9UKL4 321 aa11.44□□□□□ -0.58
DDX56-203ENST00000421223 DRG1Q9Y295 367 aaKnown RBP11.44□□□□□ -0.58
DDX56-203ENST00000421223 NME7Q9Y5B8 376 aa11.44□□□□□ -0.58
DDX56-203ENST00000421223 SCN1AP35498 2009 aa11.44□□□□□ -0.58
DDX56-203ENST00000421223 RRN3P2A6NIE6 340 aa11.44□□□□□ -0.58
DDX56-203ENST00000421223 C2CD4BA6NLJ0 364 aa11.44□□□□□ -0.58
DDX56-203ENST00000421223 CLDN5O00501 218 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms