RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 TTLL2Q9BWV7 592 aa12.32□□□□□ -0.44
USP4-204ENST00000416417 TPSD1Q9BZJ3 242 aa12.32□□□□□ -0.44
USP4-204ENST00000416417 FAM13BQ9NYF5 915 aa12.32□□□□□ -0.44
USP4-204ENST00000416417 CFAP97Q9P2B7 532 aa12.32□□□□□ -0.44
USP4-204ENST00000416417 ANAPC1Q9H1A4 1944 aa12.32□□□□□ -0.44
USP4-204ENST00000416417 UBE4BO95155 1302 aa12.32□□□□□ -0.44
USP4-204ENST00000416417 GREB1Q4ZG55 1949 aa12.32□□□□□ -0.44
USP4-204ENST00000416417 K7EQS6 105 aa12.32□□□□□ -0.44
USP4-204ENST00000416417 LRP3O75074 770 aa12.32□□□□□ -0.44
USP4-204ENST00000416417 VNN1O95497 513 aa12.32□□□□□ -0.44
USP4-204ENST00000416417 CYP17A1P05093 508 aa12.32□□□□□ -0.44
USP4-204ENST00000416417 HSP90AA1P07900 732 aaKnown RBP12.32□□□□□ -0.44
USP4-204ENST00000416417 STK4Q13043 487 aa12.32□□□□□ -0.44
USP4-204ENST00000416417 BMT2Q1RMZ1 405 aa12.32□□□□□ -0.44
USP4-204ENST00000416417 C12orf40Q86WS4 652 aa12.32□□□□□ -0.44
USP4-204ENST00000416417 HSCBQ8IWL3 235 aa12.32□□□□□ -0.44
USP4-204ENST00000416417 KIAA0895Q8NCT3 520 aa12.32□□□□□ -0.44
USP4-204ENST00000416417 SCAMP5Q8TAC9 235 aa12.32□□□□□ -0.44
USP4-204ENST00000416417 SNX21Q969T3 373 aa12.32□□□□□ -0.44
USP4-204ENST00000416417 MED10Q9BTT4 135 aa12.32□□□□□ -0.44
USP4-204ENST00000416417 CHORDC1Q9UHD1 332 aaPredicted RBP12.32□□□□□ -0.44
USP4-204ENST00000416417 PVALEFA0A1B0GWK0 134 aa12.31□□□□□ -0.44
USP4-204ENST00000416417 ACTN4O43707 911 aaKnown RBP12.31□□□□□ -0.44
USP4-204ENST00000416417 EPN2O95208 641 aa12.31□□□□□ -0.44
USP4-204ENST00000416417 NFATC1O95644 943 aa12.31□□□□□ -0.44
USP4-204ENST00000416417 MBL2P11226 248 aaPredicted RBP12.31□□□□□ -0.44
USP4-204ENST00000416417 PGFP49763 221 aa12.31□□□□□ -0.44
USP4-204ENST00000416417 DGKEP52429 567 aa12.31□□□□□ -0.44
USP4-204ENST00000416417 NOP14P78316 857 aaKnown RBP12.31□□□□□ -0.44
USP4-204ENST00000416417 KDSRQ06136 332 aa12.31□□□□□ -0.44
USP4-204ENST00000416417 NR1H3Q13133 447 aa12.31□□□□□ -0.44
USP4-204ENST00000416417 ZNF699Q32M78 642 aa12.31□□□□□ -0.44
USP4-204ENST00000416417 PLK5Q496M5 336 aa12.31□□□□□ -0.44
USP4-204ENST00000416417 KMT5BQ4FZB7 885 aa12.31□□□□□ -0.44
USP4-204ENST00000416417 EMC10Q5UCC4 262 aa12.31□□□□□ -0.44
USP4-204ENST00000416417 PAQR9Q6ZVX9 377 aa12.31□□□□□ -0.44
USP4-204ENST00000416417 SYT13Q7L8C5 426 aa12.31□□□□□ -0.44
USP4-204ENST00000416417 CEP57L1Q8IYX8 460 aa12.31□□□□□ -0.44
USP4-204ENST00000416417 C12orf50Q8NA57 414 aaPredicted RBP12.31□□□□□ -0.44
USP4-204ENST00000416417 PARD3BQ8TEW8 1205 aa12.31□□□□□ -0.44
USP4-204ENST00000416417 FBXO32Q969P5 355 aa12.31□□□□□ -0.44
USP4-204ENST00000416417 WBP2Q969T9 261 aa12.31□□□□□ -0.44
USP4-204ENST00000416417 PAGE5Q96GU1 130 aa12.31□□□□□ -0.44
USP4-204ENST00000416417 DUSP15Q9H1R2 295 aaPredicted RBP12.31□□□□□ -0.44
USP4-204ENST00000416417 MAGEF1Q9HAY2 307 aa12.31□□□□□ -0.44
USP4-204ENST00000416417 HMGXB4Q9UGU5 601 aa12.31□□□□□ -0.44
USP4-204ENST00000416417 PTPRDP23468 1912 aa12.3□□□□□ -0.44
USP4-204ENST00000416417 A0A1B0GVL5 298 aa12.3□□□□□ -0.44
USP4-204ENST00000416417 APBB3O95704 486 aa12.3□□□□□ -0.44
USP4-204ENST00000416417 OAS1P00973 400 aaKnown RBP12.3□□□□□ -0.44
USP4-204ENST00000416417 C4BPAP04003 597 aaKnown RBP12.3□□□□□ -0.44
USP4-204ENST00000416417 IRF1P10914 325 aa12.3□□□□□ -0.44
USP4-204ENST00000416417 CCDC130P13994 396 aa12.3□□□□□ -0.44
USP4-204ENST00000416417 HNRNPLP14866 589 aaKnown RBP eCLIP12.3□□□□□ -0.44
USP4-204ENST00000416417 TCF3P15923 654 aa12.3□□□□□ -0.44
USP4-204ENST00000416417 YWHAQP27348 245 aa12.3□□□□□ -0.44
USP4-204ENST00000416417 SLC7A9P82251 487 aa12.3□□□□□ -0.44
USP4-204ENST00000416417 NCOA4Q13772 614 aa12.3□□□□□ -0.44
USP4-204ENST00000416417 DHCR24Q15392 516 aa12.3□□□□□ -0.44
USP4-204ENST00000416417 FBXO43Q4G163 708 aa12.3□□□□□ -0.44
USP4-204ENST00000416417 SPOPLQ6IQ16 392 aa12.3□□□□□ -0.44
USP4-204ENST00000416417 ACOT1Q86TX2 421 aa12.3□□□□□ -0.44
USP4-204ENST00000416417 FAM35AQ86V20 835 aa12.3□□□□□ -0.44
USP4-204ENST00000416417 C12orf56Q8IXR9 622 aa12.3□□□□□ -0.44
USP4-204ENST00000416417 ADGRG2Q8IZP9 1017 aa12.3□□□□□ -0.44
USP4-204ENST00000416417 CAMKK1Q8N5S9 505 aa12.3□□□□□ -0.44
USP4-204ENST00000416417 USP33Q8TEY7 942 aa12.3□□□□□ -0.44
USP4-204ENST00000416417 SYAP1Q96A49 352 aaPredicted RBP12.3□□□□□ -0.44
USP4-204ENST00000416417 ELOVL4Q9GZR5 314 aa12.3□□□□□ -0.44
USP4-204ENST00000416417 CCSER2Q9H7U1 834 aa12.3□□□□□ -0.44
USP4-204ENST00000416417 EXOC1Q9NV70 894 aa12.3□□□□□ -0.44
USP4-204ENST00000416417 GMIPQ9P107 970 aa12.3□□□□□ -0.44
USP4-204ENST00000416417 EML5Q05BV3 1969 aa12.3□□□□□ -0.44
USP4-204ENST00000416417 HELZP42694 1942 aaKnown RBP12.29□□□□□ -0.44
USP4-204ENST00000416417 CCDC163A0A0D9SF12 145 aa12.29□□□□□ -0.44
USP4-204ENST00000416417 COCHO43405 550 aa12.29□□□□□ -0.44
USP4-204ENST00000416417 BEST1O76090 585 aa12.29□□□□□ -0.44
USP4-204ENST00000416417 OLFM2O95897 454 aa12.29□□□□□ -0.44
USP4-204ENST00000416417 SLFN14P0C7P3 912 aa12.29□□□□□ -0.44
USP4-204ENST00000416417 PRR29P0C7W0 189 aa12.29□□□□□ -0.44
USP4-204ENST00000416417 ZNF806P0C7X5 589 aa12.29□□□□□ -0.44
USP4-204ENST00000416417 PFKFB1P16118 471 aa12.29□□□□□ -0.44
USP4-204ENST00000416417 BCKDHBP21953 392 aa12.29□□□□□ -0.44
USP4-204ENST00000416417 ATICP31939 592 aa12.29□□□□□ -0.44
USP4-204ENST00000416417 GBP1P32455 592 aa12.29□□□□□ -0.44
USP4-204ENST00000416417 TIE1P35590 1138 aa12.29□□□□□ -0.44
USP4-204ENST00000416417 MPLP40238 635 aa12.29□□□□□ -0.44
USP4-204ENST00000416417 SLC5A3P53794 718 aa12.29□□□□□ -0.44
USP4-204ENST00000416417 ZNF667Q5HYK9 610 aa12.29□□□□□ -0.44
USP4-204ENST00000416417 ANO7Q6IWH7 933 aa12.29□□□□□ -0.44
USP4-204ENST00000416417 RHBDF2Q6PJF5 856 aa12.29□□□□□ -0.44
USP4-204ENST00000416417 NUP93Q8N1F7 819 aa12.29□□□□□ -0.44
USP4-204ENST00000416417 ALLCQ8N6M5 410 aa12.29□□□□□ -0.44
USP4-204ENST00000416417 NAT16Q8N8M0 369 aa12.29□□□□□ -0.44
USP4-204ENST00000416417 TSTD1Q8NFU3 115 aa12.29□□□□□ -0.44
USP4-204ENST00000416417 JAKMIP2Q96AA8 810 aa12.29□□□□□ -0.44
USP4-204ENST00000416417 ERLEC1Q96DZ1 483 aa12.29□□□□□ -0.44
USP4-204ENST00000416417 ZFRQ96KR1 1074 aaKnown RBP12.29□□□□□ -0.44
USP4-204ENST00000416417 SLITRK1Q96PX8 696 aa12.29□□□□□ -0.44
USP4-204ENST00000416417 FAM49BQ9NUQ9 324 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms