RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 PAPD7Q5XG87 772 aaKnown RBP9.48□□□□□ -0.89
LIG4-202ENST00000405925 C11orf63Q6NUN7 778 aa9.48□□□□□ -0.89
LIG4-202ENST00000405925 ANKMY2Q8IV38 441 aa9.48□□□□□ -0.89
LIG4-202ENST00000405925 NDUFAF2Q8N183 169 aa9.48□□□□□ -0.89
LIG4-202ENST00000405925 ATP6V0D2Q8N8Y2 350 aa9.48□□□□□ -0.89
LIG4-202ENST00000405925 GIPC2Q8TF65 315 aa9.48□□□□□ -0.89
LIG4-202ENST00000405925 TTC1Q99614 292 aa9.48□□□□□ -0.89
LIG4-202ENST00000405925 TLR10Q9BXR5 811 aa9.48□□□□□ -0.89
LIG4-202ENST00000405925 Q9Y3F1 56 aa9.48□□□□□ -0.89
LIG4-202ENST00000405925 UBR3Q6ZT12 1888 aa9.48□□□□□ -0.89
LIG4-202ENST00000405925 TARSL2A2RTX5 802 aaKnown RBP9.48□□□□□ -0.89
LIG4-202ENST00000405925 F8VP50 259 aa9.48□□□□□ -0.89
LIG4-202ENST00000405925 STK25O00506 426 aa9.48□□□□□ -0.89
LIG4-202ENST00000405925 NPR3P17342 541 aa9.48□□□□□ -0.89
LIG4-202ENST00000405925 HNRNPH3P31942 346 aaKnown RBP9.48□□□□□ -0.89
LIG4-202ENST00000405925 COILP38432 576 aaPredicted RBP9.48□□□□□ -0.89
LIG4-202ENST00000405925 SLC11A2P49281 568 aa9.48□□□□□ -0.89
LIG4-202ENST00000405925 VEGFBP49765 207 aa9.48□□□□□ -0.89
LIG4-202ENST00000405925 IRX4P78413 519 aa9.48□□□□□ -0.89
LIG4-202ENST00000405925 TLE2Q04725 743 aa9.48□□□□□ -0.89
LIG4-202ENST00000405925 ADCY2Q08462 1091 aa9.48□□□□□ -0.89
LIG4-202ENST00000405925 C6orf163Q5TEZ5 329 aa9.48□□□□□ -0.89
LIG4-202ENST00000405925 FAXCQ5TGI0 409 aa9.48□□□□□ -0.89
LIG4-202ENST00000405925 GDF6Q6KF10 455 aaPredicted RBP9.48□□□□□ -0.89
LIG4-202ENST00000405925 OTOP2Q7RTS6 562 aa9.48□□□□□ -0.89
LIG4-202ENST00000405925 TMEM192Q8IY95 271 aa9.48□□□□□ -0.89
LIG4-202ENST00000405925 AFAP1L2Q8N4X5 818 aa9.48□□□□□ -0.89
LIG4-202ENST00000405925 ATP11CQ8NB49 1132 aa9.48□□□□□ -0.89
LIG4-202ENST00000405925 MCUQ8NE86 351 aa9.48□□□□□ -0.89
LIG4-202ENST00000405925 SCLYQ96I15 445 aa9.48□□□□□ -0.89
LIG4-202ENST00000405925 FBXO44Q9H4M3 255 aa9.48□□□□□ -0.89
LIG4-202ENST00000405925 RCCD1A6NED2 376 aa9.48□□□□□ -0.89
LIG4-202ENST00000405925 KRT37O76014 449 aa9.48□□□□□ -0.89
LIG4-202ENST00000405925 NOL4O94818 638 aa9.48□□□□□ -0.89
LIG4-202ENST00000405925 ATG7O95352 703 aa9.48□□□□□ -0.89
LIG4-202ENST00000405925 OTUD4Q01804 1114 aaKnown RBP9.48□□□□□ -0.89
LIG4-202ENST00000405925 SLC6A3Q01959 620 aa9.48□□□□□ -0.89
LIG4-202ENST00000405925 TSTA3Q13630 321 aaPredicted RBP9.48□□□□□ -0.89
LIG4-202ENST00000405925 VSIG1Q86XK7 387 aa9.48□□□□□ -0.89
LIG4-202ENST00000405925 PALB2Q86YC2 1186 aa9.48□□□□□ -0.89
LIG4-202ENST00000405925 LRRC8CQ8TDW0 803 aa9.48□□□□□ -0.89
LIG4-202ENST00000405925 RILPQ96NA2 401 aa9.48□□□□□ -0.89
LIG4-202ENST00000405925 NUDCD1Q96RS6 583 aa9.48□□□□□ -0.89
LIG4-202ENST00000405925 RBM15Q96T37 977 aaKnown RBP eCLIP9.48□□□□□ -0.89
LIG4-202ENST00000405925 MRPL45Q9BRJ2 306 aaKnown RBP9.48□□□□□ -0.89
LIG4-202ENST00000405925 ERP44Q9BS26 406 aa9.48□□□□□ -0.89
LIG4-202ENST00000405925 TRAIPQ9BWF2 469 aa9.48□□□□□ -0.89
LIG4-202ENST00000405925 L2HGDHQ9H9P8 463 aa9.48□□□□□ -0.89
LIG4-202ENST00000405925 CLDN5O00501 218 aa9.47□□□□□ -0.89
LIG4-202ENST00000405925 PJA2O43164 708 aa9.47□□□□□ -0.89
LIG4-202ENST00000405925 LTFP02788 710 aa9.47□□□□□ -0.89
LIG4-202ENST00000405925 MYL4P12829 197 aa9.47□□□□□ -0.89
LIG4-202ENST00000405925 PAMP19021 973 aa9.47□□□□□ -0.89
LIG4-202ENST00000405925 NFKBIAP25963 317 aa9.47□□□□□ -0.89
LIG4-202ENST00000405925 YWHAQP27348 245 aa9.47□□□□□ -0.89
LIG4-202ENST00000405925 NOMO3P69849 1222 aa9.47□□□□□ -0.89
LIG4-202ENST00000405925 PTK7Q13308 1070 aa9.47□□□□□ -0.89
LIG4-202ENST00000405925 ANKRD20A3Q5VUR7 823 aa9.47□□□□□ -0.89
LIG4-202ENST00000405925 MAMDC4Q6UXC1 1216 aa9.47□□□□□ -0.89
LIG4-202ENST00000405925 EXD1Q8NHP7 514 aa9.47□□□□□ -0.89
LIG4-202ENST00000405925 ACTL9Q8TC94 416 aa9.47□□□□□ -0.89
LIG4-202ENST00000405925 TTC25Q96NG3 672 aa9.47□□□□□ -0.89
LIG4-202ENST00000405925 C3orf70A6NLC5 250 aaPredicted RBP9.47□□□□□ -0.89
LIG4-202ENST00000405925 GOLGA8CPA6NN73 597 aa9.47□□□□□ -0.89
LIG4-202ENST00000405925 ADCY6O43306 1168 aa9.47□□□□□ -0.89
LIG4-202ENST00000405925 TROVE2P10155 538 aaKnown RBP eCLIP9.47□□□□□ -0.89
LIG4-202ENST00000405925 RFC1P35251 1148 aaPredicted RBP9.47□□□□□ -0.89
LIG4-202ENST00000405925 PRAMEP78395 509 aa9.47□□□□□ -0.89
LIG4-202ENST00000405925 ARHGAP15Q53QZ3 475 aa9.47□□□□□ -0.89
LIG4-202ENST00000405925 C6orf118Q5T5N4 469 aa9.47□□□□□ -0.89
LIG4-202ENST00000405925 ZNF618Q5T7W0 954 aa9.47□□□□□ -0.89
LIG4-202ENST00000405925 SPOCD1Q6ZMY3 1216 aa9.47□□□□□ -0.89
LIG4-202ENST00000405925 SRRM1Q8IYB3 904 aaKnown RBP9.47□□□□□ -0.89
LIG4-202ENST00000405925 BCAS4Q8TDM0 211 aa9.47□□□□□ -0.89
LIG4-202ENST00000405925 VPS39Q96JC1 886 aa9.47□□□□□ -0.89
LIG4-202ENST00000405925 UROC1Q96N76 676 aa9.47□□□□□ -0.89
LIG4-202ENST00000405925 C16orf70Q9BSU1 422 aa9.47□□□□□ -0.89
LIG4-202ENST00000405925 WDR70Q9NW82 654 aa9.47□□□□□ -0.89
LIG4-202ENST00000405925 PAK5Q9P286 719 aa9.47□□□□□ -0.89
LIG4-202ENST00000405925 FARP1Q9Y4F1 1045 aaPredicted RBP9.47□□□□□ -0.89
LIG4-202ENST00000405925 MYH6P13533 1939 aa9.47□□□□□ -0.89
LIG4-202ENST00000405925 IQANK1A0A1B0GTG1 560 aa9.47□□□□□ -0.89
LIG4-202ENST00000405925 GSTA1P08263 222 aa9.47□□□□□ -0.89
LIG4-202ENST00000405925 GSTA2P09210 222 aa9.47□□□□□ -0.89
LIG4-202ENST00000405925 PRLRP16471 622 aa9.47□□□□□ -0.89
LIG4-202ENST00000405925 ETFBP38117 255 aa9.47□□□□□ -0.89
LIG4-202ENST00000405925 CENPCQ03188 943 aa9.47□□□□□ -0.89
LIG4-202ENST00000405925 POU5F1BQ06416 359 aa9.47□□□□□ -0.89
LIG4-202ENST00000405925 TRIM32Q13049 653 aa9.47□□□□□ -0.89
LIG4-202ENST00000405925 PCSK7Q16549 785 aa9.47□□□□□ -0.89
LIG4-202ENST00000405925 C15orf59Q2T9L4 293 aaPredicted RBP9.47□□□□□ -0.89
LIG4-202ENST00000405925 ANO4Q32M45 955 aa9.47□□□□□ -0.89
LIG4-202ENST00000405925 DCLRE1AQ6PJP8 1040 aa9.47□□□□□ -0.89
LIG4-202ENST00000405925 SYDE1Q6ZW31 735 aaPredicted RBP9.47□□□□□ -0.89
LIG4-202ENST00000405925 NT5DC3Q86UY8 548 aa9.47□□□□□ -0.89
LIG4-202ENST00000405925 TTC30AQ86WT1 665 aa9.47□□□□□ -0.89
LIG4-202ENST00000405925 KRT35Q92764 455 aa9.47□□□□□ -0.89
LIG4-202ENST00000405925 ASIC4Q96FT7 647 aa9.47□□□□□ -0.89
LIG4-202ENST00000405925 ZMYND15Q9H091 742 aa9.47□□□□□ -0.89
LIG4-202ENST00000405925 TLR8Q9NR97 1041 aaKnown RBP9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms