RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 LRRC43Q8N309 656 aa19.11■□□□□ 0.65
CCDC88C-203ENST00000389856 DIS3LQ8TF46 1054 aaKnown RBP19.11■□□□□ 0.65
CCDC88C-203ENST00000389856 KCTD13Q8WZ19 329 aa19.11■□□□□ 0.65
CCDC88C-203ENST00000389856 KRT35Q92764 455 aa19.11■□□□□ 0.65
CCDC88C-203ENST00000389856 PAWRQ96IZ0 340 aaKnown RBP19.11■□□□□ 0.65
CCDC88C-203ENST00000389856 RBM41Q96IZ5 413 aaKnown RBP19.11■□□□□ 0.65
CCDC88C-203ENST00000389856 GDAP1L1Q96MZ0 367 aa19.11■□□□□ 0.65
CCDC88C-203ENST00000389856 TRIM7Q9C029 511 aa19.11■□□□□ 0.65
CCDC88C-203ENST00000389856 TTC3P53804 2025 aa19.1■□□□□ 0.65
CCDC88C-203ENST00000389856 DDHD2O94830 711 aa19.1■□□□□ 0.65
CCDC88C-203ENST00000389856 ALDH2P05091 517 aa19.1■□□□□ 0.65
CCDC88C-203ENST00000389856 GPD1P21695 349 aa19.1■□□□□ 0.65
CCDC88C-203ENST00000389856 RFC1P35251 1148 aaPredicted RBP19.1■□□□□ 0.65
CCDC88C-203ENST00000389856 YWHAHQ04917 246 aaPredicted RBP19.1■□□□□ 0.65
CCDC88C-203ENST00000389856 DHX34Q14147 1143 aaKnown RBP19.1■□□□□ 0.65
CCDC88C-203ENST00000389856 PAN2Q504Q3 1202 aaKnown RBP19.1■□□□□ 0.65
CCDC88C-203ENST00000389856 INTS6LQ5JSJ4 861 aaKnown RBP19.1■□□□□ 0.65
CCDC88C-203ENST00000389856 FAM183BPQ6ZVS7 135 aa19.1■□□□□ 0.65
CCDC88C-203ENST00000389856 ARCQ7LC44 396 aa19.1■□□□□ 0.65
CCDC88C-203ENST00000389856 DEFB128Q7Z7B8 93 aa19.1■□□□□ 0.65
CCDC88C-203ENST00000389856 ZNF280BQ86YH2 543 aa19.1■□□□□ 0.65
CCDC88C-203ENST00000389856 EXD1Q8NHP7 514 aa19.1■□□□□ 0.65
CCDC88C-203ENST00000389856 SMARCD1Q96GM5 515 aa19.1■□□□□ 0.65
CCDC88C-203ENST00000389856 CNPY3Q9BT09 278 aa19.1■□□□□ 0.65
CCDC88C-203ENST00000389856 LRRC4Q9HBW1 653 aa19.1■□□□□ 0.65
CCDC88C-203ENST00000389856 UTP11Q9Y3A2 253 aaKnown RBP19.1■□□□□ 0.65
CCDC88C-203ENST00000389856 ERICH4A6NGS2 130 aa19.09■□□□□ 0.65
CCDC88C-203ENST00000389856 FBXO21O94952 628 aa19.09■□□□□ 0.65
CCDC88C-203ENST00000389856 ZNF143P52747 638 aaPredicted RBP19.09■□□□□ 0.65
CCDC88C-203ENST00000389856 RNASE9P60153 205 aaKnown RBP19.09■□□□□ 0.65
CCDC88C-203ENST00000389856 EFHC1Q5JVL4 640 aa19.09■□□□□ 0.65
CCDC88C-203ENST00000389856 ZFYVE27Q5T4F4 411 aa19.09■□□□□ 0.65
CCDC88C-203ENST00000389856 DCAF12L1Q5VU92 463 aa19.09■□□□□ 0.65
CCDC88C-203ENST00000389856 C4orf50Q6ZRC1 276 aa19.09■□□□□ 0.65
CCDC88C-203ENST00000389856 TSEN2Q8NCE0 465 aaKnown RBP19.09■□□□□ 0.65
CCDC88C-203ENST00000389856 CASD1Q96PB1 797 aa19.09■□□□□ 0.65
CCDC88C-203ENST00000389856 CRTAC1Q9NQ79 661 aa19.09■□□□□ 0.65
CCDC88C-203ENST00000389856 TIMM13Q9Y5L4 95 aaPredicted RBP19.09■□□□□ 0.65
CCDC88C-203ENST00000389856 SCN5AQ14524 2016 aa19.09■□□□□ 0.65
CCDC88C-203ENST00000389856 MICAL3Q7RTP6 2002 aa19.08■□□□□ 0.65
CCDC88C-203ENST00000389856 ABHD14A-ACY1A0A1B0GW23 586 aa19.08■□□□□ 0.65
CCDC88C-203ENST00000389856 HCRTO43612 131 aa19.08■□□□□ 0.65
CCDC88C-203ENST00000389856 SHOX2O60902 331 aaPredicted RBP19.08■□□□□ 0.65
CCDC88C-203ENST00000389856 HSPA1AP0DMV8 641 aaKnown RBP19.08■□□□□ 0.65
CCDC88C-203ENST00000389856 HSPA1BP0DMV9 641 aaKnown RBP19.08■□□□□ 0.65
CCDC88C-203ENST00000389856 COPS2P61201 443 aa19.08■□□□□ 0.65
CCDC88C-203ENST00000389856 ZSCAN26Q16670 478 aa19.08■□□□□ 0.65
CCDC88C-203ENST00000389856 EMC10Q5UCC4 262 aa19.08■□□□□ 0.65
CCDC88C-203ENST00000389856 OLFML1Q6UWY5 402 aa19.08■□□□□ 0.65
CCDC88C-203ENST00000389856 CD300LGQ6UXG3 332 aa19.08■□□□□ 0.65
CCDC88C-203ENST00000389856 FAM35AQ86V20 835 aa19.08■□□□□ 0.65
CCDC88C-203ENST00000389856 RCOR2Q8IZ40 523 aa19.08■□□□□ 0.65
CCDC88C-203ENST00000389856 DCP1BQ8IZD4 617 aaKnown RBP19.08■□□□□ 0.65
CCDC88C-203ENST00000389856 SIX6OS1Q8N1H7 587 aa19.08■□□□□ 0.65
CCDC88C-203ENST00000389856 HASPINQ8TF76 798 aa19.08■□□□□ 0.65
CCDC88C-203ENST00000389856 AP1M1Q9BXS5 423 aa19.08■□□□□ 0.65
CCDC88C-203ENST00000389856 OXCT2Q9BYC2 517 aaPredicted RBP19.08■□□□□ 0.65
CCDC88C-203ENST00000389856 KRT82Q9NSB4 513 aa19.08■□□□□ 0.65
CCDC88C-203ENST00000389856 LOC101059915A0A1B0GWI6 518 aaPredicted RBP19.07■□□□□ 0.64
CCDC88C-203ENST00000389856 I3L4J1 428 aa19.07■□□□□ 0.64
CCDC88C-203ENST00000389856 DPYSL4O14531 572 aa19.07■□□□□ 0.64
CCDC88C-203ENST00000389856 ATP2C2O75185 946 aa19.07■□□□□ 0.64
CCDC88C-203ENST00000389856 AP1G2O75843 785 aa19.07■□□□□ 0.64
CCDC88C-203ENST00000389856 GJB6O95452 261 aa19.07■□□□□ 0.64
CCDC88C-203ENST00000389856 TIMP1P01033 207 aa19.07■□□□□ 0.64
CCDC88C-203ENST00000389856 PDGFRAP16234 1089 aa19.07■□□□□ 0.64
CCDC88C-203ENST00000389856 SDC4P31431 198 aa19.07■□□□□ 0.64
CCDC88C-203ENST00000389856 PCK1P35558 622 aa19.07■□□□□ 0.64
CCDC88C-203ENST00000389856 MARCKSL1P49006 195 aa19.07■□□□□ 0.64
CCDC88C-203ENST00000389856 DRG2P55039 364 aaKnown RBP19.07■□□□□ 0.64
CCDC88C-203ENST00000389856 MRPS25P82663 173 aaKnown RBP19.07■□□□□ 0.64
CCDC88C-203ENST00000389856 ZNF211Q13398 564 aaPredicted RBP19.07■□□□□ 0.64
CCDC88C-203ENST00000389856 SLC26A9Q7LBE3 791 aa19.07■□□□□ 0.64
CCDC88C-203ENST00000389856 PIGZQ86VD9 579 aa19.07■□□□□ 0.64
CCDC88C-203ENST00000389856 CCDC50Q8IVM0 306 aa19.07■□□□□ 0.64
CCDC88C-203ENST00000389856 TMEM199Q8N511 208 aa19.07■□□□□ 0.64
CCDC88C-203ENST00000389856 JOSD2Q8TAC2 188 aa19.07■□□□□ 0.64
CCDC88C-203ENST00000389856 PCED1BQ96HM7 432 aa19.07■□□□□ 0.64
CCDC88C-203ENST00000389856 ZIM3Q96PE6 472 aa19.07■□□□□ 0.64
CCDC88C-203ENST00000389856 B3GNT5Q9BYG0 378 aa19.07■□□□□ 0.64
CCDC88C-203ENST00000389856 FAM129AQ9BZQ8 928 aa19.07■□□□□ 0.64
CCDC88C-203ENST00000389856 HOMER3Q9NSC5 361 aa19.07■□□□□ 0.64
CCDC88C-203ENST00000389856 TJP2Q9UDY2 1190 aa19.07■□□□□ 0.64
CCDC88C-203ENST00000389856 RASAL2Q9UJF2 1139 aa19.07■□□□□ 0.64
CCDC88C-203ENST00000389856 ADAM28Q9UKQ2 775 aa19.07■□□□□ 0.64
CCDC88C-203ENST00000389856 PRG3Q9Y2Y8 225 aaPredicted RBP19.07■□□□□ 0.64
CCDC88C-203ENST00000389856 SF3B1O75533 1304 aaKnown RBP eCLIP19.07■□□□□ 0.64
CCDC88C-203ENST00000389856 TBKBP1A7MCY6 615 aa19.07■□□□□ 0.64
CCDC88C-203ENST00000389856 KIAA0355O15063 1070 aa19.07■□□□□ 0.64
CCDC88C-203ENST00000389856 OAZ2O95190 189 aa19.07■□□□□ 0.64
CCDC88C-203ENST00000389856 AMHP03971 560 aa19.07■□□□□ 0.64
CCDC88C-203ENST00000389856 PYGMP11217 842 aa19.07■□□□□ 0.64
CCDC88C-203ENST00000389856 TKTP29401 623 aaKnown RBP19.07■□□□□ 0.64
CCDC88C-203ENST00000389856 CHRNA3P32297 505 aa19.07■□□□□ 0.64
CCDC88C-203ENST00000389856 SKOR1P84550 965 aa19.07■□□□□ 0.64
CCDC88C-203ENST00000389856 HLTFQ14527 1009 aaKnown RBP eCLIP19.07■□□□□ 0.64
CCDC88C-203ENST00000389856 FAM171BQ6P995 826 aa19.07■□□□□ 0.64
CCDC88C-203ENST00000389856 SLC13A5Q86YT5 568 aaPredicted RBP19.07■□□□□ 0.64
CCDC88C-203ENST00000389856 DDX47Q9H0S4 455 aaKnown RBP19.07■□□□□ 0.64
CCDC88C-203ENST00000389856 NRDE2Q9H7Z3 1164 aa19.07■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms