RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 PDS5AQ29RF7 1337 aaKnown RBP4.26□□□□□ -1.73
USH2A-202ENST00000366942 SLC12A8A0AV02 714 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 CCDC78A2IDD5 438 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 EFCAB7A8K855 629 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 GOLGA8SH3BPF8 625 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 CCRL2O00421 344 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 ARHGAP6O43182 974 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 SLC26A4O43511 780 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 NDUFS3O75489 264 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 ATG7O95352 703 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 IFNA16P05015 189 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 ABOP16442 354 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 ADORA2BP29275 332 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 SLC16A2P36021 539 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 ATP5C1P36542 298 aaKnown RBP4.26□□□□□ -1.73
USH2A-202ENST00000366942 TOB1P50616 345 aaPredicted RBP4.26□□□□□ -1.73
USH2A-202ENST00000366942 ACLYP53396 1101 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 RAD23AP54725 363 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 GSDMDP57764 484 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 KCNJ2P63252 427 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 SLMAPQ14BN4 828 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 ATF7IP2Q5U623 682 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 STK32CQ86UX6 486 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 LINC00116Q8NCU8 138 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 ZNF717Q9BY31 904 aaPredicted RBP4.26□□□□□ -1.73
USH2A-202ENST00000366942 CCDC86Q9H6F5 360 aaKnown RBP4.26□□□□□ -1.73
USH2A-202ENST00000366942 PANK4Q9NVE7 773 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 AIPL1Q9NZN9 384 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 CLUHO75153 1309 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 ARHGEF5Q12774 1597 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 TTC4O95801 387 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 GUCA1CO95843 209 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 MSH3P20585 1137 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 SCNN1AP37088 669 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 TRPC1P48995 793 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 DGKQP52824 942 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 CDH15P55291 814 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 PEX3P56589 373 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 TPI1P60174 286 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 ZBED6P86452 979 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 FAM160A1Q05DH4 1040 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 PITRM1Q5JRX3 1037 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 DEPDC1Q5TB30 811 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 PADI6Q6TGC4 694 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 TRIM72Q6ZMU5 477 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 ZNF605Q86T29 641 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 CSGALNACT2Q8N6G5 542 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 MYRIPQ8NFW9 859 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 UBE2Q2Q8WVN8 375 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 UBE2E3Q969T4 207 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 LENG9Q96B70 501 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 SENP7Q9BQF6 1050 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 TUBGCP2Q9BSJ2 902 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 VPS16Q9H269 839 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 TMBIM4Q9HC24 238 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 NPHS2Q9NP85 383 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 TMEM9BQ9NQ34 198 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 DMGDHQ9UI17 866 aaKnown RBP4.26□□□□□ -1.73
USH2A-202ENST00000366942 PADI4Q9UM07 663 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 SIT1Q9Y3P8 196 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 RNF17Q9BXT8 1623 aaKnown RBP4.26□□□□□ -1.73
USH2A-202ENST00000366942 MAP3K4Q9Y6R4 1608 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 NFASCO94856 1347 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 GSAPA4D1B5 854 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 RASA4BC9J798 803 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 MEN1O00255 615 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 RASA4O43374 803 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 IFNB1P01574 187 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 NTSP30990 170 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 RPL9P32969 192 aaKnown RBP4.26□□□□□ -1.73
USH2A-202ENST00000366942 MATKP42679 507 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 ABCG1P45844 678 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 ARHGDIAP52565 204 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 MAPK10P53779 464 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 TAP1Q03518 808 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 CNTN1Q12860 1018 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 GRIK3Q13003 919 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 ACOX1Q15067 660 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 RBBP7Q16576 425 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 MEA1Q16626 185 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 ARHGAP44Q17R89 818 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 SNAP47Q5SQN1 464 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 LDLRAP1Q5SW96 308 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 LIPNQ5VXI9 398 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 TATDN1Q6P1N9 297 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 FBXL13Q8NEE6 735 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 CALML6Q8TD86 181 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 SSH1Q8WYL5 1049 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 ZNF653Q96CK0 615 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 MCRS1Q96EZ8 462 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 RIT2Q99578 217 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 CALN1Q9BXU9 219 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 LHX5Q9H2C1 402 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 RNF39Q9H2S5 420 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 DMAP1Q9NPF5 467 aaPredicted RBP4.26□□□□□ -1.73
USH2A-202ENST00000366942 JADE2Q9NQC1 790 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 PRKAG3Q9UGI9 489 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 ASIC3Q9UHC3 531 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 PACSIN3Q9UKS6 424 aa4.26□□□□□ -1.73
USH2A-202ENST00000366942 AGLP35573 1532 aa4.25□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms