RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 MMRN1Q13201 1228 aa10.54□□□□□ -0.72
CLIP1-202ENST00000358808 NAPEPLDQ6IQ20 393 aa10.54□□□□□ -0.72
CLIP1-202ENST00000358808 PRR23CQ6ZRP0 262 aa10.54□□□□□ -0.72
CLIP1-202ENST00000358808 SYDE1Q6ZW31 735 aaPredicted RBP10.54□□□□□ -0.72
CLIP1-202ENST00000358808 TMEM117Q9H0C3 514 aa10.54□□□□□ -0.72
CLIP1-202ENST00000358808 CTNNAL1Q9UBT7 734 aa10.54□□□□□ -0.72
CLIP1-202ENST00000358808 RAB23Q9ULC3 237 aa10.54□□□□□ -0.72
CLIP1-202ENST00000358808 MROH1Q8NDA8 1641 aa10.54□□□□□ -0.72
CLIP1-202ENST00000358808 PDZK1P1A8MUH7 402 aa10.54□□□□□ -0.72
CLIP1-202ENST00000358808 ZBTB39O15060 712 aa10.54□□□□□ -0.72
CLIP1-202ENST00000358808 STIP1P31948 543 aaKnown RBP10.54□□□□□ -0.72
CLIP1-202ENST00000358808 NUMBP49757 651 aa10.54□□□□□ -0.72
CLIP1-202ENST00000358808 CCDC144BQ3MJ40 725 aa10.54□□□□□ -0.72
CLIP1-202ENST00000358808 C19orf18Q8NEA5 215 aa10.54□□□□□ -0.72
CLIP1-202ENST00000358808 ERAP1Q9NZ08 941 aa10.54□□□□□ -0.72
CLIP1-202ENST00000358808 PSMC3IPQ9P2W1 217 aaPredicted RBP10.54□□□□□ -0.72
CLIP1-202ENST00000358808 TUBGCP4Q9UGJ1 667 aa10.54□□□□□ -0.72
CLIP1-202ENST00000358808 KLF15Q9UIH9 416 aa10.54□□□□□ -0.72
CLIP1-202ENST00000358808 PLA2G4CQ9UP65 541 aa10.54□□□□□ -0.72
CLIP1-202ENST00000358808 PMPCBO75439 489 aa10.54□□□□□ -0.72
CLIP1-202ENST00000358808 WEE2P0C1S8 567 aa10.54□□□□□ -0.72
CLIP1-202ENST00000358808 CNGA2Q16280 664 aa10.54□□□□□ -0.72
CLIP1-202ENST00000358808 TKFCQ3LXA3 575 aa10.54□□□□□ -0.72
CLIP1-202ENST00000358808 EFHC1Q5JVL4 640 aa10.54□□□□□ -0.72
CLIP1-202ENST00000358808 ATF7IP2Q5U623 682 aa10.54□□□□□ -0.72
CLIP1-202ENST00000358808 PLA2G4FQ68DD2 849 aa10.54□□□□□ -0.72
CLIP1-202ENST00000358808 GATAD2AQ86YP4 633 aa10.54□□□□□ -0.72
CLIP1-202ENST00000358808 RBBP8NLQ8NC74 664 aaPredicted RBP10.54□□□□□ -0.72
CLIP1-202ENST00000358808 SGF29Q96ES7 293 aa10.54□□□□□ -0.72
CLIP1-202ENST00000358808 SH3GLB1Q9Y371 365 aa10.54□□□□□ -0.72
CLIP1-202ENST00000358808 BMP10O95393 424 aa10.54□□□□□ -0.72
CLIP1-202ENST00000358808 UMPSP11172 480 aa10.54□□□□□ -0.72
CLIP1-202ENST00000358808 GPD1P21695 349 aa10.54□□□□□ -0.72
CLIP1-202ENST00000358808 NMT1P30419 496 aaKnown RBP10.54□□□□□ -0.72
CLIP1-202ENST00000358808 PTGER2P43116 358 aa10.54□□□□□ -0.72
CLIP1-202ENST00000358808 GMPSP49915 693 aaPredicted RBP10.54□□□□□ -0.72
CLIP1-202ENST00000358808 PIGHQ14442 188 aaPredicted RBP10.54□□□□□ -0.72
CLIP1-202ENST00000358808 EMC2Q15006 297 aa10.54□□□□□ -0.72
CLIP1-202ENST00000358808 XKR3Q5GH77 459 aa10.54□□□□□ -0.72
CLIP1-202ENST00000358808 EPHA10Q5JZY3 1008 aa10.54□□□□□ -0.72
CLIP1-202ENST00000358808 DGKKQ5KSL6 1271 aa10.54□□□□□ -0.72
CLIP1-202ENST00000358808 ZNF618Q5T7W0 954 aa10.54□□□□□ -0.72
CLIP1-202ENST00000358808 DHX40Q8IX18 779 aaKnown RBP10.54□□□□□ -0.72
CLIP1-202ENST00000358808 SH3GL1Q99961 368 aa10.54□□□□□ -0.72
CLIP1-202ENST00000358808 ZNF70Q9UC06 446 aaPredicted RBP10.54□□□□□ -0.72
CLIP1-202ENST00000358808 SNX6Q9UNH7 406 aa10.54□□□□□ -0.72
CLIP1-202ENST00000358808 SMG5Q9UPR3 1016 aaKnown RBP10.54□□□□□ -0.72
CLIP1-202ENST00000358808 SIK3Q9Y2K2 1263 aa10.54□□□□□ -0.72
CLIP1-202ENST00000358808 TRPC5OSA6NMA1 111 aa10.53□□□□□ -0.72
CLIP1-202ENST00000358808 IFNA14P01570 189 aa10.53□□□□□ -0.72
CLIP1-202ENST00000358808 IGKV5-2P06315 115 aa10.53□□□□□ -0.72
CLIP1-202ENST00000358808 MYL4P12829 197 aa10.53□□□□□ -0.72
CLIP1-202ENST00000358808 TMED10P49755 219 aaKnown RBP10.53□□□□□ -0.72
CLIP1-202ENST00000358808 NUDT2P50583 147 aa10.53□□□□□ -0.72
CLIP1-202ENST00000358808 OXCT1P55809 520 aa10.53□□□□□ -0.72
CLIP1-202ENST00000358808 STX4Q12846 297 aa10.53□□□□□ -0.72
CLIP1-202ENST00000358808 CBFBQ13951 182 aa10.53□□□□□ -0.72
CLIP1-202ENST00000358808 TTC23Q5W5X9 447 aa10.53□□□□□ -0.72
CLIP1-202ENST00000358808 EFCAB12Q6NXP0 572 aa10.53□□□□□ -0.72
CLIP1-202ENST00000358808 CYB5R4Q7L1T6 521 aa10.53□□□□□ -0.72
CLIP1-202ENST00000358808 C4orf33Q8N1A6 199 aa10.53□□□□□ -0.72
CLIP1-202ENST00000358808 SLC16A10Q8TF71 515 aa10.53□□□□□ -0.72
CLIP1-202ENST00000358808 SEPT1Q8WYJ6 367 aa10.53□□□□□ -0.72
CLIP1-202ENST00000358808 ATP6V1G3Q96LB4 118 aa10.53□□□□□ -0.72
CLIP1-202ENST00000358808 OLFM1Q99784 485 aa10.53□□□□□ -0.72
CLIP1-202ENST00000358808 SHCBP1LQ9BZQ2 653 aa10.53□□□□□ -0.72
CLIP1-202ENST00000358808 KCTD10Q9H3F6 313 aa10.53□□□□□ -0.72
CLIP1-202ENST00000358808 TUFT1Q9NNX1 390 aa10.53□□□□□ -0.72
CLIP1-202ENST00000358808 MIEF1Q9NQG6 463 aa10.53□□□□□ -0.72
CLIP1-202ENST00000358808 KLHL1Q9NR64 748 aa10.53□□□□□ -0.72
CLIP1-202ENST00000358808 STAU1O95793 577 aaKnown RBP10.53□□□□□ -0.72
CLIP1-202ENST00000358808 AKR1B1P15121 316 aa10.53□□□□□ -0.72
CLIP1-202ENST00000358808 DPEP1P16444 411 aa10.53□□□□□ -0.72
CLIP1-202ENST00000358808 GRK4P32298 578 aa10.53□□□□□ -0.72
CLIP1-202ENST00000358808 CYLC2Q14093 348 aaPredicted RBP10.53□□□□□ -0.72
CLIP1-202ENST00000358808 FAM83EQ2M2I3 478 aa10.53□□□□□ -0.72
CLIP1-202ENST00000358808 ARMCX4Q5H9R4 360 aa10.53□□□□□ -0.72
CLIP1-202ENST00000358808 NOTUMQ6P988 496 aa10.53□□□□□ -0.72
CLIP1-202ENST00000358808 CASP10Q92851 521 aa10.53□□□□□ -0.72
CLIP1-202ENST00000358808 GLMNQ92990 594 aa10.53□□□□□ -0.72
CLIP1-202ENST00000358808 USP7Q93009 1102 aa10.53□□□□□ -0.72
CLIP1-202ENST00000358808 FAM84BQ96KN1 310 aaPredicted RBP10.53□□□□□ -0.72
CLIP1-202ENST00000358808 RNPC3Q96LT9 517 aaKnown RBP10.53□□□□□ -0.72
CLIP1-202ENST00000358808 KLHL28Q9NXS3 571 aa10.53□□□□□ -0.72
CLIP1-202ENST00000358808 HPS5Q9UPZ3 1129 aa10.53□□□□□ -0.72
CLIP1-202ENST00000358808 TTC33Q6PID6 262 aaPredicted RBP10.53□□□□□ -0.72
CLIP1-202ENST00000358808 LRRC8DQ7L1W4 858 aa10.53□□□□□ -0.72
CLIP1-202ENST00000358808 LINC00523Q86TU6 105 aa10.53□□□□□ -0.72
CLIP1-202ENST00000358808 FBXO32Q969P5 355 aa10.53□□□□□ -0.72
CLIP1-202ENST00000358808 METTL5Q9NRN9 209 aaKnown RBP10.53□□□□□ -0.72
CLIP1-202ENST00000358808 MRGBPQ9NV56 204 aa10.53□□□□□ -0.72
CLIP1-202ENST00000358808 THG1LQ9NWX6 298 aaKnown RBP10.53□□□□□ -0.72
CLIP1-202ENST00000358808 PAK5Q9P286 719 aa10.53□□□□□ -0.72
CLIP1-202ENST00000358808 TDRKHQ9Y2W6 561 aaKnown RBP10.53□□□□□ -0.72
CLIP1-202ENST00000358808 SMIM31A0A1B0GVY4 71 aa10.53□□□□□ -0.72
CLIP1-202ENST00000358808 ANXA9O76027 345 aa10.53□□□□□ -0.72
CLIP1-202ENST00000358808 TDP2O95551 362 aa10.53□□□□□ -0.72
CLIP1-202ENST00000358808 ZNF682O95780 498 aa10.53□□□□□ -0.72
CLIP1-202ENST00000358808 RPN2P04844 631 aa10.53□□□□□ -0.72
CLIP1-202ENST00000358808 SLC2A3P11169 496 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms