RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 TMEM245Q9H330 911 aa20.21■□□□□ 0.83
CCDC88B-202ENST00000356786 GPBP1L1Q9HC44 474 aaPredicted RBP20.21■□□□□ 0.83
CCDC88B-202ENST00000356786 SFMBT1Q9UHJ3 866 aa20.21■□□□□ 0.83
CCDC88B-202ENST00000356786 MROH7Q68CQ1 1323 aa20.21■□□□□ 0.83
CCDC88B-202ENST00000356786 MEI4A8MW99 385 aa20.21■□□□□ 0.83
CCDC88B-202ENST00000356786 ZBTB24O43167 697 aaPredicted RBP20.21■□□□□ 0.83
CCDC88B-202ENST00000356786 TMEM132DQ14C87 1099 aa20.21■□□□□ 0.83
CCDC88B-202ENST00000356786 DCAF6Q58WW2 860 aa20.21■□□□□ 0.83
CCDC88B-202ENST00000356786 HORMAD1Q86X24 394 aa20.21■□□□□ 0.83
CCDC88B-202ENST00000356786 CLVS1Q8IUQ0 354 aaPredicted RBP20.21■□□□□ 0.83
CCDC88B-202ENST00000356786 TAS1R2Q8TE23 839 aa20.21■□□□□ 0.83
CCDC88B-202ENST00000356786 ZFRQ96KR1 1074 aaKnown RBP20.21■□□□□ 0.83
CCDC88B-202ENST00000356786 TBC1D10AQ9BXI6 508 aa20.21■□□□□ 0.83
CCDC88B-202ENST00000356786 CYLDQ9NQC7 956 aa20.21■□□□□ 0.83
CCDC88B-202ENST00000356786 ARHGAP23Q9P227 1491 aa20.21■□□□□ 0.83
CCDC88B-202ENST00000356786 ENTPD5O75356 428 aa20.21■□□□□ 0.83
CCDC88B-202ENST00000356786 SHBGP04278 402 aa20.21■□□□□ 0.83
CCDC88B-202ENST00000356786 PYGLP06737 847 aa20.21■□□□□ 0.83
CCDC88B-202ENST00000356786 FDX1P10109 184 aa20.21■□□□□ 0.83
CCDC88B-202ENST00000356786 RNF148Q8N7C7 305 aa20.21■□□□□ 0.83
CCDC88B-202ENST00000356786 TFB1MQ8WVM0 346 aaKnown RBP20.21■□□□□ 0.83
CCDC88B-202ENST00000356786 RBBP8Q99708 897 aa20.21■□□□□ 0.83
CCDC88B-202ENST00000356786 CTNNAL1Q9UBT7 734 aa20.21■□□□□ 0.83
CCDC88B-202ENST00000356786 SALL1Q9NSC2 1324 aa20.21■□□□□ 0.83
CCDC88B-202ENST00000356786 PXDNQ92626 1479 aa20.21■□□□□ 0.83
CCDC88B-202ENST00000356786 AHCYL1O43865 530 aa20.21■□□□□ 0.83
CCDC88B-202ENST00000356786 NR3C2P08235 984 aa20.21■□□□□ 0.83
CCDC88B-202ENST00000356786 RECQLP46063 649 aaPredicted RBP20.21■□□□□ 0.83
CCDC88B-202ENST00000356786 PRKCEQ02156 737 aa20.21■□□□□ 0.83
CCDC88B-202ENST00000356786 CHRNB3Q05901 458 aa20.21■□□□□ 0.83
CCDC88B-202ENST00000356786 IL31Q6EBC2 164 aa20.21■□□□□ 0.83
CCDC88B-202ENST00000356786 CCNJLQ8IV13 435 aa20.21■□□□□ 0.83
CCDC88B-202ENST00000356786 NAT9Q9BTE0 207 aa20.21■□□□□ 0.83
CCDC88B-202ENST00000356786 PCDH9Q9HC56 1237 aa20.21■□□□□ 0.83
CCDC88B-202ENST00000356786 KCNH7Q9NS40 1196 aa20.21■□□□□ 0.83
CCDC88B-202ENST00000356786 RCCD1A6NED2 376 aa20.2■□□□□ 0.82
CCDC88B-202ENST00000356786 DRD4P21917 467 aa20.2■□□□□ 0.82
CCDC88B-202ENST00000356786 TNFRSF8P28908 595 aa20.2■□□□□ 0.82
CCDC88B-202ENST00000356786 PLIN5Q00G26 463 aa20.2■□□□□ 0.82
CCDC88B-202ENST00000356786 DCTN2Q13561 401 aaKnown RBP20.2■□□□□ 0.82
CCDC88B-202ENST00000356786 ZFYVE19Q96K21 471 aa20.2■□□□□ 0.82
CCDC88B-202ENST00000356786 SH3GL1Q99961 368 aa20.2■□□□□ 0.82
CCDC88B-202ENST00000356786 LATS2Q9NRM7 1088 aa20.2■□□□□ 0.82
CCDC88B-202ENST00000356786 SAC3D1A6NKF1 404 aa20.2■□□□□ 0.82
CCDC88B-202ENST00000356786 LZTS3O60299 673 aaPredicted RBP20.2■□□□□ 0.82
CCDC88B-202ENST00000356786 TPP2P29144 1249 aaPredicted RBP20.2■□□□□ 0.82
CCDC88B-202ENST00000356786 FDFT1P37268 417 aa20.2■□□□□ 0.82
CCDC88B-202ENST00000356786 EIF2B2P49770 351 aaKnown RBP20.2■□□□□ 0.82
CCDC88B-202ENST00000356786 DENND5BQ6ZUT9 1274 aa20.2■□□□□ 0.82
CCDC88B-202ENST00000356786 FBXO33Q7Z6M2 555 aa20.2■□□□□ 0.82
CCDC88B-202ENST00000356786 KCTD10Q9H3F6 313 aa20.2■□□□□ 0.82
CCDC88B-202ENST00000356786 CDV3Q9UKY7 258 aaKnown RBP20.2■□□□□ 0.82
CCDC88B-202ENST00000356786 SPATA31A5Q5VU36 1347 aa20.2■□□□□ 0.82
CCDC88B-202ENST00000356786 SPATA31A7Q8IWB4 1347 aa20.2■□□□□ 0.82
CCDC88B-202ENST00000356786 BCL10O95999 233 aa20.2■□□□□ 0.82
CCDC88B-202ENST00000356786 TTLL4Q14679 1199 aa20.2■□□□□ 0.82
CCDC88B-202ENST00000356786 KYAT1Q16773 422 aa20.2■□□□□ 0.82
CCDC88B-202ENST00000356786 SPDYCQ5MJ68 293 aa20.2■□□□□ 0.82
CCDC88B-202ENST00000356786 TERB1Q8NA31 727 aa20.2■□□□□ 0.82
CCDC88B-202ENST00000356786 RIN3Q8TB24 985 aa20.2■□□□□ 0.82
CCDC88B-202ENST00000356786 TCF7L2Q9NQB0 619 aa20.2■□□□□ 0.82
CCDC88B-202ENST00000356786 PNMA3Q9UL41 463 aa20.2■□□□□ 0.82
CCDC88B-202ENST00000356786 DNALI1O14645 258 aaPredicted RBP20.2■□□□□ 0.82
CCDC88B-202ENST00000356786 SLC45A4Q5BKX6 768 aa20.2■□□□□ 0.82
CCDC88B-202ENST00000356786 GCNAQ96QF7 691 aa20.2■□□□□ 0.82
CCDC88B-202ENST00000356786 GPRC5CQ9NQ84 441 aa20.2■□□□□ 0.82
CCDC88B-202ENST00000356786 CD274Q9NZQ7 290 aa20.2■□□□□ 0.82
CCDC88B-202ENST00000356786 TIMM44O43615 452 aa20.19■□□□□ 0.82
CCDC88B-202ENST00000356786 C21orf2O43822 256 aa20.19■□□□□ 0.82
CCDC88B-202ENST00000356786 ELK3P41970 407 aa20.19■□□□□ 0.82
CCDC88B-202ENST00000356786 CDK16Q00536 496 aa20.19■□□□□ 0.82
CCDC88B-202ENST00000356786 TMC5Q6UXY8 1006 aa20.19■□□□□ 0.82
CCDC88B-202ENST00000356786 KIAA1683Q9H0B3 1180 aa20.19■□□□□ 0.82
CCDC88B-202ENST00000356786 SLC8A2Q9UPR5 921 aa20.19■□□□□ 0.82
CCDC88B-202ENST00000356786 ADGRB2O60241 1585 aa20.19■□□□□ 0.82
CCDC88B-202ENST00000356786 WDR59Q6PJI9 974 aa20.19■□□□□ 0.82
CCDC88B-202ENST00000356786 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP20.19■□□□□ 0.82
CCDC88B-202ENST00000356786 MTSS1O43312 755 aa20.19■□□□□ 0.82
CCDC88B-202ENST00000356786 AVPR1AP37288 418 aa20.19■□□□□ 0.82
CCDC88B-202ENST00000356786 RGS2P41220 211 aa20.19■□□□□ 0.82
CCDC88B-202ENST00000356786 NME5P56597 212 aa20.19■□□□□ 0.82
CCDC88B-202ENST00000356786 MMRN1Q13201 1228 aa20.19■□□□□ 0.82
CCDC88B-202ENST00000356786 SH3RF1Q7Z6J0 888 aa20.19■□□□□ 0.82
CCDC88B-202ENST00000356786 STX19Q8N4C7 294 aa20.19■□□□□ 0.82
CCDC88B-202ENST00000356786 POP1Q99575 1024 aaKnown RBP20.19■□□□□ 0.82
CCDC88B-202ENST00000356786 TRIM62Q9BVG3 475 aa20.19■□□□□ 0.82
CCDC88B-202ENST00000356786 KANSL1LA0AUZ9 987 aa20.19■□□□□ 0.82
CCDC88B-202ENST00000356786 NTSR2O95665 410 aa20.19■□□□□ 0.82
CCDC88B-202ENST00000356786 ITGA9Q13797 1035 aa20.19■□□□□ 0.82
CCDC88B-202ENST00000356786 AUHQ13825 339 aaKnown RBP20.19■□□□□ 0.82
CCDC88B-202ENST00000356786 CCDC33Q8N5R6 958 aa20.19■□□□□ 0.82
CCDC88B-202ENST00000356786 PYDC1Q8WXC3 89 aa20.19■□□□□ 0.82
CCDC88B-202ENST00000356786 FAR2Q96K12 515 aa20.19■□□□□ 0.82
CCDC88B-202ENST00000356786 SRPK1Q96SB4 655 aaKnown RBP20.19■□□□□ 0.82
CCDC88B-202ENST00000356786 CHST12Q9NRB3 414 aa20.19■□□□□ 0.82
CCDC88B-202ENST00000356786 ANKEF1Q9NU02 776 aa20.19■□□□□ 0.82
CCDC88B-202ENST00000356786 EVPLLA8MZ36 301 aa20.18■□□□□ 0.82
CCDC88B-202ENST00000356786 BLVRAP53004 296 aa20.18■□□□□ 0.82
CCDC88B-202ENST00000356786 KRT33BQ14525 404 aa20.18■□□□□ 0.82
CCDC88B-202ENST00000356786 GJC2Q5T442 439 aaPredicted RBP20.18■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms