RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 KIAA0895Q8NCT3 520 aa7.55□□□□□ -1.2
VPS13A-201ENST00000355766 CCDC112Q8NEF3 446 aa7.55□□□□□ -1.2
VPS13A-201ENST00000355766 RIN3Q8TB24 985 aa7.55□□□□□ -1.2
VPS13A-201ENST00000355766 SLC22A17Q8WUG5 538 aa7.55□□□□□ -1.2
VPS13A-201ENST00000355766 TRAPPC12Q8WVT3 735 aa7.55□□□□□ -1.2
VPS13A-201ENST00000355766 PCYT2Q99447 389 aa7.55□□□□□ -1.2
VPS13A-201ENST00000355766 TSG101Q99816 390 aa7.55□□□□□ -1.2
VPS13A-201ENST00000355766 UNC45AQ9H3U1 944 aa7.55□□□□□ -1.2
VPS13A-201ENST00000355766 ST6GALNAC4Q9H4F1 302 aa7.55□□□□□ -1.2
VPS13A-201ENST00000355766 CARS2Q9HA77 564 aaKnown RBP7.55□□□□□ -1.2
VPS13A-201ENST00000355766 FANCLQ9NW38 375 aa7.55□□□□□ -1.2
VPS13A-201ENST00000355766 CGNQ9P2M7 1197 aaKnown RBP7.55□□□□□ -1.2
VPS13A-201ENST00000355766 TPX2Q9ULW0 747 aaKnown RBP7.55□□□□□ -1.2
VPS13A-201ENST00000355766 CA14Q9ULX7 337 aa7.55□□□□□ -1.2
VPS13A-201ENST00000355766 ST3GAL5Q9UNP4 418 aa7.55□□□□□ -1.2
VPS13A-201ENST00000355766 GINS2Q9Y248 185 aa7.55□□□□□ -1.2
VPS13A-201ENST00000355766 PCDHA10Q9Y5I2 948 aa7.55□□□□□ -1.2
VPS13A-201ENST00000355766 IRAK3Q9Y616 596 aa7.55□□□□□ -1.2
VPS13A-201ENST00000355766 GPR179Q6PRD1 2367 aa7.55□□□□□ -1.2
VPS13A-201ENST00000355766 PHLPP2Q6ZVD8 1323 aa7.54□□□□□ -1.2
VPS13A-201ENST00000355766 DOCK5Q9H7D0 1870 aa7.54□□□□□ -1.2
VPS13A-201ENST00000355766 A0A1W2PQC6 194 aa7.54□□□□□ -1.2
VPS13A-201ENST00000355766 IQCJ-SCHIP1C9J366 451 aaPredicted RBP7.54□□□□□ -1.2
VPS13A-201ENST00000355766 H0YCG3 227 aa7.54□□□□□ -1.2
VPS13A-201ENST00000355766 AP5Z1O43299 807 aa7.54□□□□□ -1.2
VPS13A-201ENST00000355766 N4BP1O75113 896 aaKnown RBP7.54□□□□□ -1.2
VPS13A-201ENST00000355766 KRT18P05783 430 aaKnown RBP7.54□□□□□ -1.2
VPS13A-201ENST00000355766 TPM2P07951 284 aa7.54□□□□□ -1.2
VPS13A-201ENST00000355766 SLC26A2P50443 739 aa7.54□□□□□ -1.2
VPS13A-201ENST00000355766 UBASH3AP57075 661 aa7.54□□□□□ -1.2
VPS13A-201ENST00000355766 ETF1P62495 437 aaKnown RBP7.54□□□□□ -1.2
VPS13A-201ENST00000355766 FAM189BP81408 668 aa7.54□□□□□ -1.2
VPS13A-201ENST00000355766 STK4Q13043 487 aa7.54□□□□□ -1.2
VPS13A-201ENST00000355766 GIT2Q14161 759 aa7.54□□□□□ -1.2
VPS13A-201ENST00000355766 MYBPC2Q14324 1141 aa7.54□□□□□ -1.2
VPS13A-201ENST00000355766 BMS1Q14692 1282 aaKnown RBP7.54□□□□□ -1.2
VPS13A-201ENST00000355766 PLCB4Q15147 1175 aa7.54□□□□□ -1.2
VPS13A-201ENST00000355766 TPD52L1Q16890 204 aaPredicted RBP7.54□□□□□ -1.2
VPS13A-201ENST00000355766 ZNF528Q3MIS6 628 aa7.54□□□□□ -1.2
VPS13A-201ENST00000355766 ZCWPW2Q504Y3 356 aa7.54□□□□□ -1.2
VPS13A-201ENST00000355766 WIPI1Q5MNZ9 446 aaPredicted RBP7.54□□□□□ -1.2
VPS13A-201ENST00000355766 SFRP5Q5T4F7 317 aa7.54□□□□□ -1.2
VPS13A-201ENST00000355766 MIS18BP1Q6P0N0 1132 aa7.54□□□□□ -1.2
VPS13A-201ENST00000355766 MTHFD1LQ6UB35 978 aa7.54□□□□□ -1.2
VPS13A-201ENST00000355766 C15orf39Q6ZRI6 1047 aa7.54□□□□□ -1.2
VPS13A-201ENST00000355766 C22orf34Q6ZV56 151 aa7.54□□□□□ -1.2
VPS13A-201ENST00000355766 C1orf186Q6ZWK4 172 aa7.54□□□□□ -1.2
VPS13A-201ENST00000355766 OTUD6AQ7L8S5 288 aa7.54□□□□□ -1.2
VPS13A-201ENST00000355766 FAM228AQ86W67 206 aa7.54□□□□□ -1.2
VPS13A-201ENST00000355766 VSTM4Q8IW00 320 aa7.54□□□□□ -1.2
VPS13A-201ENST00000355766 EXOC8Q8IYI6 725 aa7.54□□□□□ -1.2
VPS13A-201ENST00000355766 MAML2Q8IZL2 1156 aaPredicted RBP7.54□□□□□ -1.2
VPS13A-201ENST00000355766 MFSD2AQ8NA29 543 aa7.54□□□□□ -1.2
VPS13A-201ENST00000355766 PJA1Q8NG27 643 aa7.54□□□□□ -1.2
VPS13A-201ENST00000355766 AUTS2Q8WXX7 1259 aa7.54□□□□□ -1.2
VPS13A-201ENST00000355766 HVCN1Q96D96 273 aa7.54□□□□□ -1.2
VPS13A-201ENST00000355766 BORCS6Q96GS4 357 aa7.54□□□□□ -1.2
VPS13A-201ENST00000355766 DRC1Q96MC2 740 aa7.54□□□□□ -1.2
VPS13A-201ENST00000355766 MED15Q96RN5 788 aa7.54□□□□□ -1.2
VPS13A-201ENST00000355766 KRTAP4-7Q9BYR0 210 aa7.54□□□□□ -1.2
VPS13A-201ENST00000355766 XPO4Q9C0E2 1151 aaKnown RBP7.54□□□□□ -1.2
VPS13A-201ENST00000355766 BHMT2Q9H2M3 363 aa7.54□□□□□ -1.2
VPS13A-201ENST00000355766 AZI2Q9H6S1 392 aa7.54□□□□□ -1.2
VPS13A-201ENST00000355766 PARVGQ9HBI0 331 aa7.54□□□□□ -1.2
VPS13A-201ENST00000355766 ARHGEF3Q9NR81 526 aa7.54□□□□□ -1.2
VPS13A-201ENST00000355766 PANK4Q9NVE7 773 aa7.54□□□□□ -1.2
VPS13A-201ENST00000355766 MAGEC2Q9UBF1 373 aaPredicted RBP7.54□□□□□ -1.2
VPS13A-201ENST00000355766 RALYQ9UKM9 306 aaKnown RBP7.54□□□□□ -1.2
VPS13A-201ENST00000355766 SMG5Q9UPR3 1016 aaKnown RBP7.54□□□□□ -1.2
VPS13A-201ENST00000355766 SIT1Q9Y3P8 196 aa7.54□□□□□ -1.2
VPS13A-201ENST00000355766 ATRXP46100 2492 aa7.54□□□□□ -1.2
VPS13A-201ENST00000355766 IGKV6D-21A0A0A0MT36 114 aa7.53□□□□□ -1.2
VPS13A-201ENST00000355766 ARHGEF35A5YM69 484 aa7.53□□□□□ -1.2
VPS13A-201ENST00000355766 LGALS16A8MUM7 142 aa7.53□□□□□ -1.2
VPS13A-201ENST00000355766 E9PMD0 336 aa7.53□□□□□ -1.2
VPS13A-201ENST00000355766 PDXKO00764 312 aa7.53□□□□□ -1.2
VPS13A-201ENST00000355766 SLC16A3O15427 465 aaKnown RBP7.53□□□□□ -1.2
VPS13A-201ENST00000355766 ZNF500O60304 480 aaPredicted RBP7.53□□□□□ -1.2
VPS13A-201ENST00000355766 CXCL14O95715 111 aa7.53□□□□□ -1.2
VPS13A-201ENST00000355766 CTSAP10619 480 aa7.53□□□□□ -1.2
VPS13A-201ENST00000355766 GLULP15104 373 aa7.53□□□□□ -1.2
VPS13A-201ENST00000355766 CDK11BP21127 795 aaKnown RBP7.53□□□□□ -1.2
VPS13A-201ENST00000355766 SFPQP23246 707 aaKnown RBP eCLIP7.53□□□□□ -1.2
VPS13A-201ENST00000355766 MSNP26038 577 aaKnown RBP7.53□□□□□ -1.2
VPS13A-201ENST00000355766 YWHABP31946 246 aaKnown RBP7.53□□□□□ -1.2
VPS13A-201ENST00000355766 POLGP54098 1239 aaPredicted RBP7.53□□□□□ -1.2
VPS13A-201ENST00000355766 FKBP3Q00688 224 aaKnown RBP7.53□□□□□ -1.2
VPS13A-201ENST00000355766 ENPEPQ07075 957 aa7.53□□□□□ -1.2
VPS13A-201ENST00000355766 KCNA1Q09470 495 aa7.53□□□□□ -1.2
VPS13A-201ENST00000355766 ACAP1Q15027 740 aa7.53□□□□□ -1.2
VPS13A-201ENST00000355766 MLANAQ16655 118 aa7.53□□□□□ -1.2
VPS13A-201ENST00000355766 ARSHQ5FYA8 562 aa7.53□□□□□ -1.2
VPS13A-201ENST00000355766 TCP11X2Q5H9J9 407 aa7.53□□□□□ -1.2
VPS13A-201ENST00000355766 CLLU1OSQ5K130 101 aa7.53□□□□□ -1.2
VPS13A-201ENST00000355766 SPECC1LQ69YQ0 1117 aa7.53□□□□□ -1.2
VPS13A-201ENST00000355766 KLHL10Q6JEL2 608 aa7.53□□□□□ -1.2
VPS13A-201ENST00000355766 RINT1Q6NUQ1 792 aa7.53□□□□□ -1.2
VPS13A-201ENST00000355766 EPM2AIP1Q7L775 607 aaPredicted RBP7.53□□□□□ -1.2
VPS13A-201ENST00000355766 APTXQ7Z2E3 356 aaKnown RBP7.53□□□□□ -1.2
VPS13A-201ENST00000355766 PPFIBP1Q86W92 1011 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms