RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 GPD2P43304 727 aa9.7□□□□□ -0.86
USP4-202ENST00000351842 ATXN1P54253 815 aaKnown RBP9.7□□□□□ -0.86
USP4-202ENST00000351842 BCAT1P54687 386 aa9.7□□□□□ -0.86
USP4-202ENST00000351842 KRT83P78385 493 aa9.7□□□□□ -0.86
USP4-202ENST00000351842 CBX2Q14781 532 aaPredicted RBP9.7□□□□□ -0.86
USP4-202ENST00000351842 CNGA2Q16280 664 aa9.7□□□□□ -0.86
USP4-202ENST00000351842 C15orf59Q2T9L4 293 aaPredicted RBP9.7□□□□□ -0.86
USP4-202ENST00000351842 SH3PXD2AQ5TCZ1 1133 aa9.7□□□□□ -0.86
USP4-202ENST00000351842 C4orf50Q6ZRC1 276 aa9.7□□□□□ -0.86
USP4-202ENST00000351842 FAM183BPQ6ZVS7 135 aa9.7□□□□□ -0.86
USP4-202ENST00000351842 UNC93AQ86WB7 457 aa9.7□□□□□ -0.86
USP4-202ENST00000351842 CCAR2Q8N163 923 aaKnown RBP9.7□□□□□ -0.86
USP4-202ENST00000351842 JOSD2Q8TAC2 188 aa9.7□□□□□ -0.86
USP4-202ENST00000351842 SLC35G2Q8TBE7 412 aa9.7□□□□□ -0.86
USP4-202ENST00000351842 PHOSPHO2Q8TCD6 241 aa9.7□□□□□ -0.86
USP4-202ENST00000351842 SMARCD1Q96GM5 515 aa9.7□□□□□ -0.86
USP4-202ENST00000351842 CORO1BQ9BR76 489 aa9.7□□□□□ -0.86
USP4-202ENST00000351842 PIDD1Q9HB75 910 aa9.7□□□□□ -0.86
USP4-202ENST00000351842 CAPN6Q9Y6Q1 641 aa9.7□□□□□ -0.86
USP4-202ENST00000351842 CTIFO43310 598 aaKnown RBP9.69□□□□□ -0.86
USP4-202ENST00000351842 PAEPP09466 180 aa9.69□□□□□ -0.86
USP4-202ENST00000351842 IRF1P10914 325 aa9.69□□□□□ -0.86
USP4-202ENST00000351842 MYL4P12829 197 aa9.69□□□□□ -0.86
USP4-202ENST00000351842 ALDH1A3P47895 512 aa9.69□□□□□ -0.86
USP4-202ENST00000351842 AARSP49588 968 aaKnown RBP eCLIP9.69□□□□□ -0.86
USP4-202ENST00000351842 SLC5A3P53794 718 aa9.69□□□□□ -0.86
USP4-202ENST00000351842 PITX1P78337 314 aaPredicted RBP9.69□□□□□ -0.86
USP4-202ENST00000351842 BST2Q10589 180 aaKnown RBP9.69□□□□□ -0.86
USP4-202ENST00000351842 CAMK1Q14012 370 aa9.69□□□□□ -0.86
USP4-202ENST00000351842 GRIN2CQ14957 1233 aa9.69□□□□□ -0.86
USP4-202ENST00000351842 ANKRD52Q8NB46 1076 aa9.69□□□□□ -0.86
USP4-202ENST00000351842 ZMIZ2Q8NF64 920 aa9.69□□□□□ -0.86
USP4-202ENST00000351842 RNF34Q969K3 372 aa9.69□□□□□ -0.86
USP4-202ENST00000351842 FAM81BQ96LP2 452 aa9.69□□□□□ -0.86
USP4-202ENST00000351842 CFAP57Q96MR6 1250 aa9.69□□□□□ -0.86
USP4-202ENST00000351842 PLEKHA4Q9H4M7 779 aa9.69□□□□□ -0.86
USP4-202ENST00000351842 PTPRSQ13332 1948 aa9.69□□□□□ -0.86
USP4-202ENST00000351842 COL4A6Q14031 1691 aa9.69□□□□□ -0.86
USP4-202ENST00000351842 ARHGEF37A1IGU5 675 aa9.69□□□□□ -0.86
USP4-202ENST00000351842 H7C4K7 107 aa9.69□□□□□ -0.86
USP4-202ENST00000351842 OAZ2O95190 189 aa9.69□□□□□ -0.86
USP4-202ENST00000351842 C8AP07357 584 aa9.69□□□□□ -0.86
USP4-202ENST00000351842 NCAM1P13591 858 aa9.69□□□□□ -0.86
USP4-202ENST00000351842 TFE3P19532 575 aaPredicted RBP9.69□□□□□ -0.86
USP4-202ENST00000351842 RFC1P35251 1148 aaPredicted RBP9.69□□□□□ -0.86
USP4-202ENST00000351842 PRKCIP41743 596 aa9.69□□□□□ -0.86
USP4-202ENST00000351842 KCNT1Q5JUK3 1230 aa9.69□□□□□ -0.86
USP4-202ENST00000351842 ACAD10Q6JQN1 1059 aa9.69□□□□□ -0.86
USP4-202ENST00000351842 LCLAT1Q6UWP7 414 aa9.69□□□□□ -0.86
USP4-202ENST00000351842 DDX53Q86TM3 631 aaKnown RBP9.69□□□□□ -0.86
USP4-202ENST00000351842 UBR7Q8N806 425 aa9.69□□□□□ -0.86
USP4-202ENST00000351842 NETO2Q8NC67 525 aa9.69□□□□□ -0.86
USP4-202ENST00000351842 KHSRPQ92945 711 aaKnown RBP eCLIP9.69□□□□□ -0.86
USP4-202ENST00000351842 IQCDQ96DY2 449 aa9.69□□□□□ -0.86
USP4-202ENST00000351842 CAPZA3Q96KX2 299 aa9.69□□□□□ -0.86
USP4-202ENST00000351842 SMG9Q9H0W8 520 aaKnown RBP9.69□□□□□ -0.86
USP4-202ENST00000351842 DMAP1Q9NPF5 467 aaPredicted RBP9.69□□□□□ -0.86
USP4-202ENST00000351842 LUC7LQ9NQ29 371 aaKnown RBP9.69□□□□□ -0.86
USP4-202ENST00000351842 YJEFN3A6XGL0 299 aa9.69□□□□□ -0.86
USP4-202ENST00000351842 E7ENQ6 273 aa9.69□□□□□ -0.86
USP4-202ENST00000351842 MSI1O43347 362 aaKnown RBP9.69□□□□□ -0.86
USP4-202ENST00000351842 SPOPO43791 374 aa9.69□□□□□ -0.86
USP4-202ENST00000351842 GLUD1P00367 558 aa9.69□□□□□ -0.86
USP4-202ENST00000351842 NFE2Q16621 373 aaPredicted RBP9.69□□□□□ -0.86
USP4-202ENST00000351842 MCOLN2Q8IZK6 566 aa9.69□□□□□ -0.86
USP4-202ENST00000351842 CRYBG2Q8N1P7 616 aa9.69□□□□□ -0.86
USP4-202ENST00000351842 CCDC33Q8N5R6 958 aa9.69□□□□□ -0.86
USP4-202ENST00000351842 DUSP16Q9BY84 665 aa9.69□□□□□ -0.86
USP4-202ENST00000351842 DNAI2Q9GZS0 605 aa9.69□□□□□ -0.86
USP4-202ENST00000351842 ZWILCHQ9H900 591 aa9.69□□□□□ -0.86
USP4-202ENST00000351842 PCDHA11Q9Y5I1 949 aa9.69□□□□□ -0.86
USP4-202ENST00000351842 KNL1Q8NG31 2342 aa9.68□□□□□ -0.86
USP4-202ENST00000351842 SSU72P8A0A1W2PR75 194 aa9.68□□□□□ -0.86
USP4-202ENST00000351842 EIF3CLB5ME19 914 aaKnown RBP9.68□□□□□ -0.86
USP4-202ENST00000351842 H3BQ06 376 aaPredicted RBP9.68□□□□□ -0.86
USP4-202ENST00000351842 PAPSS1O43252 624 aaPredicted RBP9.68□□□□□ -0.86
USP4-202ENST00000351842 ZSCAN12O43309 604 aa9.68□□□□□ -0.86
USP4-202ENST00000351842 KRT86O43790 486 aa9.68□□□□□ -0.86
USP4-202ENST00000351842 RTN2O75298 545 aa9.68□□□□□ -0.86
USP4-202ENST00000351842 LRG1P02750 347 aa9.68□□□□□ -0.86
USP4-202ENST00000351842 ADH1AP07327 375 aa9.68□□□□□ -0.86
USP4-202ENST00000351842 LINC00271P0C7V0 271 aa9.68□□□□□ -0.86
USP4-202ENST00000351842 KRT3P12035 628 aa9.68□□□□□ -0.86
USP4-202ENST00000351842 TYMPP19971 482 aa9.68□□□□□ -0.86
USP4-202ENST00000351842 FLT3P36888 993 aa9.68□□□□□ -0.86
USP4-202ENST00000351842 VAV2P52735 878 aa9.68□□□□□ -0.86
USP4-202ENST00000351842 TAF10Q12962 218 aa9.68□□□□□ -0.86
USP4-202ENST00000351842 DENND5BQ6ZUT9 1274 aa9.68□□□□□ -0.86
USP4-202ENST00000351842 CCDC170Q8IYT3 715 aa9.68□□□□□ -0.86
USP4-202ENST00000351842 KREMEN2Q8NCW0 462 aa9.68□□□□□ -0.86
USP4-202ENST00000351842 ZNF564Q8TBZ8 553 aaPredicted RBP9.68□□□□□ -0.86
USP4-202ENST00000351842 PIK3R5Q8WYR1 880 aa9.68□□□□□ -0.86
USP4-202ENST00000351842 SYN2Q92777 582 aaPredicted RBP9.68□□□□□ -0.86
USP4-202ENST00000351842 CLP1Q92989 425 aaKnown RBP9.68□□□□□ -0.86
USP4-202ENST00000351842 FBXO32Q969P5 355 aa9.68□□□□□ -0.86
USP4-202ENST00000351842 CYP2S1Q96SQ9 504 aa9.68□□□□□ -0.86
USP4-202ENST00000351842 EIF3CQ99613 913 aaKnown RBP9.68□□□□□ -0.86
USP4-202ENST00000351842 MAN1C1Q9NR34 630 aa9.68□□□□□ -0.86
USP4-202ENST00000351842 TMPRSS4Q9NRS4 437 aa9.68□□□□□ -0.86
USP4-202ENST00000351842 SFMBT1Q9UHJ3 866 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms