RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 IKZF4Q9H2S9 585 aa9□□□□□ -0.97
RTN3-202ENST00000339997 ARMC7Q9H6L4 198 aa9□□□□□ -0.97
RTN3-202ENST00000339997 ACSS2Q9NR19 701 aa9□□□□□ -0.97
RTN3-202ENST00000339997 GID8Q9NWU2 228 aa9□□□□□ -0.97
RTN3-202ENST00000339997 RUVBL2Q9Y230 463 aaKnown RBP9□□□□□ -0.97
RTN3-202ENST00000339997 PKP3Q9Y446 797 aa9□□□□□ -0.97
RTN3-202ENST00000339997 CRYBG1Q9Y4K1 1723 aa9□□□□□ -0.97
RTN3-202ENST00000339997 NDUFS3O75489 264 aa9□□□□□ -0.97
RTN3-202ENST00000339997 SERPINI2O75830 405 aa9□□□□□ -0.97
RTN3-202ENST00000339997 KRT16P08779 473 aa9□□□□□ -0.97
RTN3-202ENST00000339997 SERPINB10P48595 397 aa9□□□□□ -0.97
RTN3-202ENST00000339997 FNTAP49354 379 aa9□□□□□ -0.97
RTN3-202ENST00000339997 CDK17Q00537 523 aa9□□□□□ -0.97
RTN3-202ENST00000339997 PTK2BQ14289 1009 aa9□□□□□ -0.97
RTN3-202ENST00000339997 EMC2Q15006 297 aa9□□□□□ -0.97
RTN3-202ENST00000339997 AGKQ53H12 422 aa9□□□□□ -0.97
RTN3-202ENST00000339997 C3orf67Q6ZVT6 689 aa9□□□□□ -0.97
RTN3-202ENST00000339997 LPCAT2Q7L5N7 544 aa9□□□□□ -0.97
RTN3-202ENST00000339997 ADCK2Q7Z695 626 aa9□□□□□ -0.97
RTN3-202ENST00000339997 C11orf96Q7Z7L8 435 aa9□□□□□ -0.97
RTN3-202ENST00000339997 BLOC1S5Q8TDH9 187 aa9□□□□□ -0.97
RTN3-202ENST00000339997 KIAA1683Q9H0B3 1180 aa9□□□□□ -0.97
RTN3-202ENST00000339997 NEUROG2Q9H2A3 272 aa9□□□□□ -0.97
RTN3-202ENST00000339997 COPS7BQ9H9Q2 264 aaPredicted RBP9□□□□□ -0.97
RTN3-202ENST00000339997 IARS2Q9NSE4 1012 aaKnown RBP9□□□□□ -0.97
RTN3-202ENST00000339997 FAM237BA0A1B0GVD1 139 aa8.99□□□□□ -0.97
RTN3-202ENST00000339997 ERI2A8K979 691 aaKnown RBP8.99□□□□□ -0.97
RTN3-202ENST00000339997 KCNK1O00180 336 aa8.99□□□□□ -0.97
RTN3-202ENST00000339997 NR5A2O00482 541 aa8.99□□□□□ -0.97
RTN3-202ENST00000339997 STK25O00506 426 aa8.99□□□□□ -0.97
RTN3-202ENST00000339997 CSF1RP07333 972 aa8.99□□□□□ -0.97
RTN3-202ENST00000339997 RALBP11234 206 aa8.99□□□□□ -0.97
RTN3-202ENST00000339997 CPB1P15086 417 aa8.99□□□□□ -0.97
RTN3-202ENST00000339997 RAG1P15918 1043 aa8.99□□□□□ -0.97
RTN3-202ENST00000339997 RPA3P35244 121 aaPredicted RBP8.99□□□□□ -0.97
RTN3-202ENST00000339997 DGKDQ16760 1214 aa8.99□□□□□ -0.97
RTN3-202ENST00000339997 SGSM1Q2NKQ1 1148 aa8.99□□□□□ -0.97
RTN3-202ENST00000339997 EFHC1Q5JVL4 640 aa8.99□□□□□ -0.97
RTN3-202ENST00000339997 BRINP3Q76B58 766 aa8.99□□□□□ -0.97
RTN3-202ENST00000339997 SV2AQ7L0J3 742 aa8.99□□□□□ -0.97
RTN3-202ENST00000339997 OTOAQ7RTW8 1153 aa8.99□□□□□ -0.97
RTN3-202ENST00000339997 PODNQ7Z5L7 613 aa8.99□□□□□ -0.97
RTN3-202ENST00000339997 GDPD5Q8WTR4 605 aa8.99□□□□□ -0.97
RTN3-202ENST00000339997 EPAS1Q99814 870 aa8.99□□□□□ -0.97
RTN3-202ENST00000339997 RSAD1Q9HA92 442 aa8.99□□□□□ -0.97
RTN3-202ENST00000339997 CAPN10Q9HC96 672 aa8.99□□□□□ -0.97
RTN3-202ENST00000339997 DNPEPQ9ULA0 475 aa8.99□□□□□ -0.97
RTN3-202ENST00000339997 ACO1P21399 889 aaKnown RBP8.99□□□□□ -0.97
RTN3-202ENST00000339997 CALB2P22676 271 aa8.99□□□□□ -0.97
RTN3-202ENST00000339997 RECQLP46063 649 aaPredicted RBP8.99□□□□□ -0.97
RTN3-202ENST00000339997 PPP3CCP48454 512 aa8.99□□□□□ -0.97
RTN3-202ENST00000339997 FXR2P51116 673 aaKnown RBP eCLIP8.99□□□□□ -0.97
RTN3-202ENST00000339997 SLC16A1P53985 500 aa8.99□□□□□ -0.97
RTN3-202ENST00000339997 LSM3P62310 102 aaKnown RBP8.99□□□□□ -0.97
RTN3-202ENST00000339997 EVX2Q03828 476 aa8.99□□□□□ -0.97
RTN3-202ENST00000339997 TRIM28Q13263 835 aaKnown RBP8.99□□□□□ -0.97
RTN3-202ENST00000339997 ANGPT1Q15389 498 aa8.99□□□□□ -0.97
RTN3-202ENST00000339997 WDR59Q6PJI9 974 aa8.99□□□□□ -0.97
RTN3-202ENST00000339997 LRRC74BQ6ZQY2 392 aa8.99□□□□□ -0.97
RTN3-202ENST00000339997 PCDH20Q8N6Y1 951 aaKnown RBP8.99□□□□□ -0.97
RTN3-202ENST00000339997 MOV10L1Q9BXT6 1211 aaKnown RBP8.99□□□□□ -0.97
RTN3-202ENST00000339997 C12orf65Q9H3J6 166 aaKnown RBP8.99□□□□□ -0.97
RTN3-202ENST00000339997 NOL6Q9H6R4 1146 aaKnown RBP8.99□□□□□ -0.97
RTN3-202ENST00000339997 EML4Q9HC35 981 aaKnown RBP8.99□□□□□ -0.97
RTN3-202ENST00000339997 MAN1C1Q9NR34 630 aa8.99□□□□□ -0.97
RTN3-202ENST00000339997 PLA2G4CQ9UP65 541 aa8.99□□□□□ -0.97
RTN3-202ENST00000339997 MFN2O95140 757 aa8.99□□□□□ -0.97
RTN3-202ENST00000339997 PRLRP16471 622 aa8.99□□□□□ -0.97
RTN3-202ENST00000339997 EIF2B2P49770 351 aaKnown RBP8.99□□□□□ -0.97
RTN3-202ENST00000339997 PTENP60484 403 aa8.99□□□□□ -0.97
RTN3-202ENST00000339997 DGCR6Q14129 220 aa8.99□□□□□ -0.97
RTN3-202ENST00000339997 CSHL1Q14406 222 aa8.99□□□□□ -0.97
RTN3-202ENST00000339997 SLC9A5Q14940 896 aa8.99□□□□□ -0.97
RTN3-202ENST00000339997 TMC5Q6UXY8 1006 aa8.99□□□□□ -0.97
RTN3-202ENST00000339997 ARHGEF19Q8IW93 802 aa8.99□□□□□ -0.97
RTN3-202ENST00000339997 ATPAF2Q8N5M1 289 aa8.99□□□□□ -0.97
RTN3-202ENST00000339997 CDRT15Q96T59 188 aa8.99□□□□□ -0.97
RTN3-202ENST00000339997 NDEL1Q9GZM8 345 aa8.99□□□□□ -0.97
RTN3-202ENST00000339997 HOXC10Q9NYD6 342 aa8.99□□□□□ -0.97
RTN3-202ENST00000339997 CCDC167Q9P0B6 97 aa8.99□□□□□ -0.97
RTN3-202ENST00000339997 AK5Q9Y6K8 562 aa8.99□□□□□ -0.97
RTN3-202ENST00000339997 RFX7Q2KHR2 1363 aa8.99□□□□□ -0.97
RTN3-202ENST00000339997 N4BP2Q86UW6 1770 aaPredicted RBP8.99□□□□□ -0.97
RTN3-202ENST00000339997 ARHGEF40Q8TER5 1519 aa8.99□□□□□ -0.97
RTN3-202ENST00000339997 DCDC2CA8MYV0 355 aa8.99□□□□□ -0.97
RTN3-202ENST00000339997 FAAP100Q0VG06 881 aa8.99□□□□□ -0.97
RTN3-202ENST00000339997 FAM117BQ6P1L5 589 aa8.99□□□□□ -0.97
RTN3-202ENST00000339997 MFSD7Q6UXD7 560 aa8.99□□□□□ -0.97
RTN3-202ENST00000339997 STRA8Q7Z7C7 330 aa8.99□□□□□ -0.97
RTN3-202ENST00000339997 CHSY1Q86X52 802 aa8.99□□□□□ -0.97
RTN3-202ENST00000339997 HS6ST3Q8IZP7 471 aa8.99□□□□□ -0.97
RTN3-202ENST00000339997 TTLL6Q8N841 843 aa8.99□□□□□ -0.97
RTN3-202ENST00000339997 SLC10A4Q96EP9 437 aa8.99□□□□□ -0.97
RTN3-202ENST00000339997 KLHL4Q9C0H6 718 aa8.99□□□□□ -0.97
RTN3-202ENST00000339997 FBXO6Q9NRD1 293 aaPredicted RBP8.99□□□□□ -0.97
RTN3-202ENST00000339997 NINJ2Q9NZG7 142 aa8.99□□□□□ -0.97
RTN3-202ENST00000339997 TBX20Q9UMR3 447 aa8.99□□□□□ -0.97
RTN3-202ENST00000339997 ATP8B3O60423 1300 aa8.98□□□□□ -0.97
RTN3-202ENST00000339997 C2orf71A6NGG8 1288 aa8.98□□□□□ -0.97
RTN3-202ENST00000339997 C16orf96A6NNT2 1141 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms