RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 CSNK1G1Q9HCP0 422 aa16.23■□□□□ 0.19
LIMS1-202ENST00000338045 ARFGAP3Q9NP61 516 aa16.23■□□□□ 0.19
LIMS1-202ENST00000338045 GDF3Q9NR23 364 aa16.23■□□□□ 0.19
LIMS1-202ENST00000338045 TMEM39AQ9NV64 488 aa16.23■□□□□ 0.19
LIMS1-202ENST00000338045 TRAPPC3O43617 180 aa16.22■□□□□ 0.19
LIMS1-202ENST00000338045 GRAP2O75791 330 aa16.22■□□□□ 0.19
LIMS1-202ENST00000338045 HEXIM1O94992 359 aaKnown RBP16.22■□□□□ 0.19
LIMS1-202ENST00000338045 OAZ2O95190 189 aa16.22■□□□□ 0.19
LIMS1-202ENST00000338045 KRT7P08729 469 aa16.22■□□□□ 0.19
LIMS1-202ENST00000338045 LCP1P13796 627 aa16.22■□□□□ 0.19
LIMS1-202ENST00000338045 IL1R2P27930 398 aa16.22■□□□□ 0.19
LIMS1-202ENST00000338045 MIPP30301 263 aa16.22■□□□□ 0.19
LIMS1-202ENST00000338045 CHRNA3P32297 505 aa16.22■□□□□ 0.19
LIMS1-202ENST00000338045 PTPN7P35236 360 aa16.22■□□□□ 0.19
LIMS1-202ENST00000338045 RFC2P35250 354 aa16.22■□□□□ 0.19
LIMS1-202ENST00000338045 GATMP50440 423 aa16.22■□□□□ 0.19
LIMS1-202ENST00000338045 YWHAHQ04917 246 aaPredicted RBP16.22■□□□□ 0.19
LIMS1-202ENST00000338045 MAPRE1Q15691 268 aaKnown RBP16.22■□□□□ 0.19
LIMS1-202ENST00000338045 BEND6Q5SZJ8 279 aaPredicted RBP16.22■□□□□ 0.19
LIMS1-202ENST00000338045 CNKSR3Q6P9H4 555 aa16.22■□□□□ 0.19
LIMS1-202ENST00000338045 ANKS1BQ7Z6G8 1248 aa16.22■□□□□ 0.19
LIMS1-202ENST00000338045 DEFB128Q7Z7B8 93 aa16.22■□□□□ 0.19
LIMS1-202ENST00000338045 MYLPFQ96A32 169 aa16.22■□□□□ 0.19
LIMS1-202ENST00000338045 SMARCD1Q96GM5 515 aa16.22■□□□□ 0.19
LIMS1-202ENST00000338045 PAWRQ96IZ0 340 aaKnown RBP16.22■□□□□ 0.19
LIMS1-202ENST00000338045 SLITRK1Q96PX8 696 aa16.22■□□□□ 0.19
LIMS1-202ENST00000338045 SMOQ99835 787 aa16.22■□□□□ 0.19
LIMS1-202ENST00000338045 C11orf84Q9BUA3 381 aaPredicted RBP16.22■□□□□ 0.19
LIMS1-202ENST00000338045 MRPL9Q9BYD2 267 aaKnown RBP16.22■□□□□ 0.19
LIMS1-202ENST00000338045 OSBPL8Q9BZF1 889 aa16.22■□□□□ 0.19
LIMS1-202ENST00000338045 TMEM30AQ9NV96 361 aa16.22■□□□□ 0.19
LIMS1-202ENST00000338045 AMACRQ9UHK6 382 aa16.22■□□□□ 0.19
LIMS1-202ENST00000338045 PRG3Q9Y2Y8 225 aaPredicted RBP16.22■□□□□ 0.19
LIMS1-202ENST00000338045 MICAL3Q7RTP6 2002 aa16.22■□□□□ 0.19
LIMS1-202ENST00000338045 NRP1O14786 923 aa16.22■□□□□ 0.19
LIMS1-202ENST00000338045 SYN3O14994 580 aa16.22■□□□□ 0.19
LIMS1-202ENST00000338045 AP1G2O75843 785 aa16.22■□□□□ 0.19
LIMS1-202ENST00000338045 KRT1P04264 644 aa16.22■□□□□ 0.19
LIMS1-202ENST00000338045 RALAP11233 206 aa16.22■□□□□ 0.19
LIMS1-202ENST00000338045 CAPN2P17655 700 aa16.22■□□□□ 0.19
LIMS1-202ENST00000338045 GJC1P36383 396 aa16.22■□□□□ 0.19
LIMS1-202ENST00000338045 MAP3K7CLP57077 242 aa16.22■□□□□ 0.19
LIMS1-202ENST00000338045 LRRC26Q2I0M4 334 aa16.22■□□□□ 0.19
LIMS1-202ENST00000338045 EFHC1Q5JVL4 640 aa16.22■□□□□ 0.19
LIMS1-202ENST00000338045 LRRC19Q9H756 370 aa16.22■□□□□ 0.19
LIMS1-202ENST00000338045 PCYOX1Q9UHG3 505 aa16.22■□□□□ 0.19
LIMS1-202ENST00000338045 HHLA1C9JL84 531 aa16.21■□□□□ 0.19
LIMS1-202ENST00000338045 SDC4P31431 198 aa16.21■□□□□ 0.19
LIMS1-202ENST00000338045 CETN2P41208 172 aa16.21■□□□□ 0.19
LIMS1-202ENST00000338045 PTPN9P43378 593 aa16.21■□□□□ 0.19
LIMS1-202ENST00000338045 CACNA2D1P54289 1103 aa16.21■□□□□ 0.19
LIMS1-202ENST00000338045 ADIGQ0VDE8 80 aa16.21■□□□□ 0.19
LIMS1-202ENST00000338045 DHX34Q14147 1143 aaKnown RBP16.21■□□□□ 0.19
LIMS1-202ENST00000338045 RAB41Q5JT25 222 aa16.21■□□□□ 0.19
LIMS1-202ENST00000338045 CYP4V2Q6ZWL3 525 aaPredicted RBP16.21■□□□□ 0.19
LIMS1-202ENST00000338045 LRRTM3Q86VH5 581 aa16.21■□□□□ 0.19
LIMS1-202ENST00000338045 CCDC50Q8IVM0 306 aa16.21■□□□□ 0.19
LIMS1-202ENST00000338045 IFT20Q8IY31 132 aa16.21■□□□□ 0.19
LIMS1-202ENST00000338045 CMASQ8NFW8 434 aaPredicted RBP16.21■□□□□ 0.19
LIMS1-202ENST00000338045 RAPGEF5Q92565 580 aa16.21■□□□□ 0.19
LIMS1-202ENST00000338045 MAGOHBQ96A72 148 aaKnown RBP16.21■□□□□ 0.19
LIMS1-202ENST00000338045 RNF25Q96BH1 459 aaPredicted RBP16.21■□□□□ 0.19
LIMS1-202ENST00000338045 CFAP57Q96MR6 1250 aa16.21■□□□□ 0.19
LIMS1-202ENST00000338045 TMEM209Q96SK2 561 aa16.21■□□□□ 0.19
LIMS1-202ENST00000338045 NCAPGQ9BPX3 1015 aa16.21■□□□□ 0.19
LIMS1-202ENST00000338045 TMEM175Q9BSA9 504 aa16.21■□□□□ 0.19
LIMS1-202ENST00000338045 LRRC4Q9HBW1 653 aa16.21■□□□□ 0.19
LIMS1-202ENST00000338045 TMLHEQ9NVH6 421 aa16.21■□□□□ 0.19
LIMS1-202ENST00000338045 MARCH5Q9NX47 278 aa16.21■□□□□ 0.19
LIMS1-202ENST00000338045 ADAM28Q9UKQ2 775 aa16.21■□□□□ 0.19
LIMS1-202ENST00000338045 USP18Q9UMW8 372 aa16.21■□□□□ 0.19
LIMS1-202ENST00000338045 C3orf70A6NLC5 250 aaPredicted RBP16.2■□□□□ 0.18
LIMS1-202ENST00000338045 TADA2AO75478 443 aa16.2■□□□□ 0.18
LIMS1-202ENST00000338045 TRUB2O95900 331 aaKnown RBP16.2■□□□□ 0.18
LIMS1-202ENST00000338045 ALDH2P05091 517 aa16.2■□□□□ 0.18
LIMS1-202ENST00000338045 MYBL2P10244 700 aa16.2■□□□□ 0.18
LIMS1-202ENST00000338045 FNTAP49354 379 aa16.2■□□□□ 0.18
LIMS1-202ENST00000338045 MRPS5P82675 430 aaKnown RBP16.2■□□□□ 0.18
LIMS1-202ENST00000338045 TSPY1Q01534 308 aa16.2■□□□□ 0.18
LIMS1-202ENST00000338045 GUCY2DQ02846 1103 aa16.2■□□□□ 0.18
LIMS1-202ENST00000338045 IKBKEQ14164 716 aa16.2■□□□□ 0.18
LIMS1-202ENST00000338045 SMC1AQ14683 1233 aaKnown RBP16.2■□□□□ 0.18
LIMS1-202ENST00000338045 TAZQ16635 292 aa16.2■□□□□ 0.18
LIMS1-202ENST00000338045 C15orf59Q2T9L4 293 aaPredicted RBP16.2■□□□□ 0.18
LIMS1-202ENST00000338045 SH3PXD2AQ5TCZ1 1133 aa16.2■□□□□ 0.18
LIMS1-202ENST00000338045 MFSD7Q6UXD7 560 aa16.2■□□□□ 0.18
LIMS1-202ENST00000338045 SPOCD1Q6ZMY3 1216 aa16.2■□□□□ 0.18
LIMS1-202ENST00000338045 EIF1ADQ8N9N8 165 aaKnown RBP16.2■□□□□ 0.18
LIMS1-202ENST00000338045 SEC14L1Q92503 715 aa16.2■□□□□ 0.18
LIMS1-202ENST00000338045 CENPIQ92674 756 aaPredicted RBP16.2■□□□□ 0.18
LIMS1-202ENST00000338045 RUNDC3BQ96NL0 473 aa16.2■□□□□ 0.18
LIMS1-202ENST00000338045 KCNK16Q96T55 309 aa16.2■□□□□ 0.18
LIMS1-202ENST00000338045 DDX23Q9BUQ8 820 aaKnown RBP16.2■□□□□ 0.18
LIMS1-202ENST00000338045 EPB41L5Q9HCM4 733 aa16.2■□□□□ 0.18
LIMS1-202ENST00000338045 KLHL11Q9NVR0 708 aa16.2■□□□□ 0.18
LIMS1-202ENST00000338045 EFR3BQ9Y2G0 817 aa16.2■□□□□ 0.18
LIMS1-202ENST00000338045 FAM187AA6NFU0 413 aa16.2■□□□□ 0.18
LIMS1-202ENST00000338045 ZSCAN5CA6NGD5 496 aaPredicted RBP16.2■□□□□ 0.18
LIMS1-202ENST00000338045 PI4K2BG5E9Z4 385 aa16.2■□□□□ 0.18
LIMS1-202ENST00000338045 TTI1O43156 1089 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms