RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 SPOPO43791 374 aa10.55□□□□□ -0.72
HMGB3-201ENST00000325307 SRGAP2O75044 1071 aa10.55□□□□□ -0.72
HMGB3-201ENST00000325307 GRAP2O75791 330 aa10.55□□□□□ -0.72
HMGB3-201ENST00000325307 FGF18O76093 207 aa10.55□□□□□ -0.72
HMGB3-201ENST00000325307 ZRANB2O95218 330 aaKnown RBP eCLIP10.55□□□□□ -0.72
HMGB3-201ENST00000325307 CYP2F1P24903 491 aa10.55□□□□□ -0.72
HMGB3-201ENST00000325307 PLA2G4AP47712 749 aa10.55□□□□□ -0.72
HMGB3-201ENST00000325307 RPL7AP62424 266 aaKnown RBP10.55□□□□□ -0.72
HMGB3-201ENST00000325307 ADIGQ0VDE8 80 aa10.55□□□□□ -0.72
HMGB3-201ENST00000325307 MRPL58Q14197 206 aaKnown RBP10.55□□□□□ -0.72
HMGB3-201ENST00000325307 PAPD7Q5XG87 772 aaKnown RBP10.55□□□□□ -0.72
HMGB3-201ENST00000325307 HSFY1Q96LI6 401 aa10.55□□□□□ -0.72
HMGB3-201ENST00000325307 MYCBPQ99417 103 aaPredicted RBP10.55□□□□□ -0.72
HMGB3-201ENST00000325307 PKMYT1Q99640 499 aa10.55□□□□□ -0.72
HMGB3-201ENST00000325307 DMAP1Q9NPF5 467 aaPredicted RBP10.55□□□□□ -0.72
HMGB3-201ENST00000325307 MTUS1Q9ULD2 1270 aa10.55□□□□□ -0.72
HMGB3-201ENST00000325307 PCDHB5Q9Y5E4 795 aa10.55□□□□□ -0.72
HMGB3-201ENST00000325307 F8VP50 259 aa10.54□□□□□ -0.72
HMGB3-201ENST00000325307 CACNA2D1P54289 1103 aa10.54□□□□□ -0.72
HMGB3-201ENST00000325307 IFRD2Q12894 506 aaPredicted RBP10.54□□□□□ -0.72
HMGB3-201ENST00000325307 TEX35Q5T0J7 233 aa10.54□□□□□ -0.72
HMGB3-201ENST00000325307 TMEM110Q86TL2 294 aa10.54□□□□□ -0.72
HMGB3-201ENST00000325307 ATAD1Q8NBU5 361 aa10.54□□□□□ -0.72
HMGB3-201ENST00000325307 FBXO22Q8NEZ5 403 aa10.54□□□□□ -0.72
HMGB3-201ENST00000325307 AUTS2Q8WXX7 1259 aa10.54□□□□□ -0.72
HMGB3-201ENST00000325307 CALR3Q96L12 384 aaKnown RBP10.54□□□□□ -0.72
HMGB3-201ENST00000325307 ZKSCAN7Q9P0L1 754 aaPredicted RBP10.54□□□□□ -0.72
HMGB3-201ENST00000325307 AMFRQ9UKV5 643 aa10.54□□□□□ -0.72
HMGB3-201ENST00000325307 USTQ9Y2C2 406 aa10.54□□□□□ -0.72
HMGB3-201ENST00000325307 COL4A6Q14031 1691 aa10.54□□□□□ -0.72
HMGB3-201ENST00000325307 OR1D2P34982 312 aa10.54□□□□□ -0.72
HMGB3-201ENST00000325307 GABRB2P47870 512 aa10.54□□□□□ -0.72
HMGB3-201ENST00000325307 TKTL1P51854 596 aa10.54□□□□□ -0.72
HMGB3-201ENST00000325307 TAP1Q03518 808 aa10.54□□□□□ -0.72
HMGB3-201ENST00000325307 SHHQ15465 462 aa10.54□□□□□ -0.72
HMGB3-201ENST00000325307 DDX53Q86TM3 631 aaKnown RBP10.54□□□□□ -0.72
HMGB3-201ENST00000325307 EMC1Q8N766 993 aa10.54□□□□□ -0.72
HMGB3-201ENST00000325307 LRRC57Q8N9N7 239 aa10.54□□□□□ -0.72
HMGB3-201ENST00000325307 KLHL23Q8NBE8 558 aa10.54□□□□□ -0.72
HMGB3-201ENST00000325307 FAM149B1Q96BN6 582 aa10.54□□□□□ -0.72
HMGB3-201ENST00000325307 NCAPGQ9BPX3 1015 aa10.54□□□□□ -0.72
HMGB3-201ENST00000325307 UBE2OQ9C0C9 1292 aaKnown RBP10.54□□□□□ -0.72
HMGB3-201ENST00000325307 LAMA2P24043 3122 aaKnown RBP10.54□□□□□ -0.72
HMGB3-201ENST00000325307 TSC2P49815 1807 aa10.54□□□□□ -0.72
HMGB3-201ENST00000325307 GRXCR1A8MXD5 290 aa10.54□□□□□ -0.72
HMGB3-201ENST00000325307 MTA2O94776 668 aa10.54□□□□□ -0.72
HMGB3-201ENST00000325307 HADHBP55084 474 aaKnown RBP10.54□□□□□ -0.72
HMGB3-201ENST00000325307 RSPO2Q6UXX9 243 aaPredicted RBP10.54□□□□□ -0.72
HMGB3-201ENST00000325307 PIK3R5Q8WYR1 880 aa10.54□□□□□ -0.72
HMGB3-201ENST00000325307 PNKPQ96T60 521 aa10.54□□□□□ -0.72
HMGB3-201ENST00000325307 SEPT5Q99719 369 aaPredicted RBP10.54□□□□□ -0.72
HMGB3-201ENST00000325307 TMEM30AQ9NV96 361 aa10.54□□□□□ -0.72
HMGB3-201ENST00000325307 ALG6Q9Y672 507 aa10.54□□□□□ -0.72
HMGB3-201ENST00000325307 SIGLEC16A6NMB1 481 aa10.53□□□□□ -0.72
HMGB3-201ENST00000325307 PAPSS1O43252 624 aaPredicted RBP10.53□□□□□ -0.72
HMGB3-201ENST00000325307 SEC31AO94979 1220 aaKnown RBP10.53□□□□□ -0.72
HMGB3-201ENST00000325307 MYOGP15173 224 aa10.53□□□□□ -0.72
HMGB3-201ENST00000325307 COMTP21964 271 aa10.53□□□□□ -0.72
HMGB3-201ENST00000325307 TCEAL1Q15170 157 aa10.53□□□□□ -0.72
HMGB3-201ENST00000325307 RPS6KA1Q15418 735 aa10.53□□□□□ -0.72
HMGB3-201ENST00000325307 MGAT5BQ3V5L5 792 aa10.53□□□□□ -0.72
HMGB3-201ENST00000325307 C11orf63Q6NUN7 778 aa10.53□□□□□ -0.72
HMGB3-201ENST00000325307 NOA1Q8NC60 698 aaKnown RBP10.53□□□□□ -0.72
HMGB3-201ENST00000325307 CLEC4CQ8WTT0 213 aa10.53□□□□□ -0.72
HMGB3-201ENST00000325307 GOLGA1Q92805 767 aa10.53□□□□□ -0.72
HMGB3-201ENST00000325307 MCRS1Q96EZ8 462 aa10.53□□□□□ -0.72
HMGB3-201ENST00000325307 PIWIL1Q96J94 861 aaKnown RBP10.53□□□□□ -0.72
HMGB3-201ENST00000325307 HERC2P3Q9BVR0 1158 aa10.53□□□□□ -0.72
HMGB3-201ENST00000325307 OXCT2Q9BYC2 517 aaPredicted RBP10.53□□□□□ -0.72
HMGB3-201ENST00000325307 PARD6BQ9BYG5 372 aa10.53□□□□□ -0.72
HMGB3-201ENST00000325307 MRPL17Q9NRX2 175 aaKnown RBP10.53□□□□□ -0.72
HMGB3-201ENST00000325307 CHST7Q9NS84 486 aa10.53□□□□□ -0.72
HMGB3-201ENST00000325307 MTRRQ9UBK8 725 aa10.53□□□□□ -0.72
HMGB3-201ENST00000325307 SLC27A5Q9Y2P5 690 aa10.53□□□□□ -0.72
HMGB3-201ENST00000325307 PSMA2P25787 234 aa10.53□□□□□ -0.72
HMGB3-201ENST00000325307 RFC1P35251 1148 aaPredicted RBP10.53□□□□□ -0.72
HMGB3-201ENST00000325307 NDUFV1P49821 464 aa10.53□□□□□ -0.72
HMGB3-201ENST00000325307 SLC6A3Q01959 620 aa10.53□□□□□ -0.72
HMGB3-201ENST00000325307 FAM109BQ6ICB4 259 aaPredicted RBP10.53□□□□□ -0.72
HMGB3-201ENST00000325307 RNF19BQ6ZMZ0 732 aa10.53□□□□□ -0.72
HMGB3-201ENST00000325307 GPR161Q8N6U8 529 aaKnown RBP10.53□□□□□ -0.72
HMGB3-201ENST00000325307 ZMIZ2Q8NF64 920 aa10.53□□□□□ -0.72
HMGB3-201ENST00000325307 JOSD2Q8TAC2 188 aa10.53□□□□□ -0.72
HMGB3-201ENST00000325307 NDRG1Q92597 394 aaKnown RBP10.53□□□□□ -0.72
HMGB3-201ENST00000325307 CLP1Q92989 425 aaKnown RBP10.53□□□□□ -0.72
HMGB3-201ENST00000325307 CYLDQ9NQC7 956 aa10.53□□□□□ -0.72
HMGB3-201ENST00000325307 IP6K2Q9UHH9 426 aa10.53□□□□□ -0.72
HMGB3-201ENST00000325307 TMEM191CA6NGB0 347 aa10.52□□□□□ -0.72
HMGB3-201ENST00000325307 ZNF185O15231 689 aa10.52□□□□□ -0.72
HMGB3-201ENST00000325307 ADAM12O43184 909 aa10.52□□□□□ -0.72
HMGB3-201ENST00000325307 GABBR2O75899 941 aa10.52□□□□□ -0.72
HMGB3-201ENST00000325307 CXCR5P32302 372 aa10.52□□□□□ -0.72
HMGB3-201ENST00000325307 GJC1P36383 396 aa10.52□□□□□ -0.72
HMGB3-201ENST00000325307 DSG1Q02413 1049 aa10.52□□□□□ -0.72
HMGB3-201ENST00000325307 GPR17Q13304 367 aa10.52□□□□□ -0.72
HMGB3-201ENST00000325307 TAF5Q15542 800 aa10.52□□□□□ -0.72
HMGB3-201ENST00000325307 DDR2Q16832 855 aa10.52□□□□□ -0.72
HMGB3-201ENST00000325307 SDHAF4Q5VUM1 108 aa10.52□□□□□ -0.72
HMGB3-201ENST00000325307 OLFML1Q6UWY5 402 aa10.52□□□□□ -0.72
HMGB3-201ENST00000325307 TMC7Q7Z402 723 aa10.52□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms