RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 ZMIZ2Q8NF64 920 aa19.33■□□□□ 0.69
USP39-201ENST00000323701 RUBCNQ92622 972 aa19.33■□□□□ 0.69
USP39-201ENST00000323701 SMOQ99835 787 aa19.33■□□□□ 0.69
USP39-201ENST00000323701 FTHL17Q9BXU8 183 aa19.33■□□□□ 0.69
USP39-201ENST00000323701 DPH5Q9H2P9 285 aa19.33■□□□□ 0.69
USP39-201ENST00000323701 PCYOX1Q9UHG3 505 aa19.33■□□□□ 0.69
USP39-201ENST00000323701 LRRD1A4D1F6 860 aa19.33■□□□□ 0.68
USP39-201ENST00000323701 XPO1O14980 1071 aaKnown RBP19.33■□□□□ 0.68
USP39-201ENST00000323701 ODC1P11926 461 aa19.33■□□□□ 0.68
USP39-201ENST00000323701 CHRNA3P32297 505 aa19.33■□□□□ 0.68
USP39-201ENST00000323701 TLE2Q04725 743 aa19.33■□□□□ 0.68
USP39-201ENST00000323701 ADIGQ0VDE8 80 aa19.33■□□□□ 0.68
USP39-201ENST00000323701 SMC1AQ14683 1233 aaKnown RBP19.33■□□□□ 0.68
USP39-201ENST00000323701 SPOCD1Q6ZMY3 1216 aa19.33■□□□□ 0.68
USP39-201ENST00000323701 GPRIN1Q7Z2K8 1008 aa19.33■□□□□ 0.68
USP39-201ENST00000323701 MAATS1Q7Z4T9 603 aa19.33■□□□□ 0.68
USP39-201ENST00000323701 RCOR2Q8IZ40 523 aa19.33■□□□□ 0.68
USP39-201ENST00000323701 C12orf50Q8NA57 414 aaPredicted RBP19.33■□□□□ 0.68
USP39-201ENST00000323701 CCDC26Q8TAB7 109 aa19.33■□□□□ 0.68
USP39-201ENST00000323701 CNPY3Q9BT09 278 aa19.33■□□□□ 0.68
USP39-201ENST00000323701 MED10Q9BTT4 135 aa19.33■□□□□ 0.68
USP39-201ENST00000323701 PLVAPQ9BX97 442 aa19.33■□□□□ 0.68
USP39-201ENST00000323701 CRISPLD2Q9H0B8 497 aa19.33■□□□□ 0.68
USP39-201ENST00000323701 TMEM161AQ9NX61 479 aa19.33■□□□□ 0.68
USP39-201ENST00000323701 USP18Q9UMW8 372 aa19.33■□□□□ 0.68
USP39-201ENST00000323701 LOC101059915A0A1B0GWI6 518 aaPredicted RBP19.32■□□□□ 0.68
USP39-201ENST00000323701 CYP11A1P05108 521 aa19.32■□□□□ 0.68
USP39-201ENST00000323701 CDKN2BP42772 138 aa19.32■□□□□ 0.68
USP39-201ENST00000323701 PLCB3Q01970 1234 aa19.32■□□□□ 0.68
USP39-201ENST00000323701 ADCY1Q08828 1119 aa19.32■□□□□ 0.68
USP39-201ENST00000323701 DCLRE1AQ6PJP8 1040 aa19.32■□□□□ 0.68
USP39-201ENST00000323701 ANKRD33Q7Z3H0 272 aa19.32■□□□□ 0.68
USP39-201ENST00000323701 FAM35AQ86V20 835 aa19.32■□□□□ 0.68
USP39-201ENST00000323701 CRIPAKQ8N1N5 446 aa19.32■□□□□ 0.68
USP39-201ENST00000323701 SEC14L1Q92503 715 aa19.32■□□□□ 0.68
USP39-201ENST00000323701 HIPK3Q9H422 1215 aa19.32■□□□□ 0.68
USP39-201ENST00000323701 LRRC19Q9H756 370 aa19.32■□□□□ 0.68
USP39-201ENST00000323701 CALCOCO1Q9P1Z2 691 aa19.32■□□□□ 0.68
USP39-201ENST00000323701 LCMT1Q9UIC8 334 aa19.32■□□□□ 0.68
USP39-201ENST00000323701 MTUS1Q9ULD2 1270 aa19.32■□□□□ 0.68
USP39-201ENST00000323701 PRG3Q9Y2Y8 225 aaPredicted RBP19.32■□□□□ 0.68
USP39-201ENST00000323701 TRUB2O95900 331 aaKnown RBP19.32■□□□□ 0.68
USP39-201ENST00000323701 TNNT3P45378 269 aaPredicted RBP19.32■□□□□ 0.68
USP39-201ENST00000323701 ATXN1P54253 815 aaKnown RBP19.32■□□□□ 0.68
USP39-201ENST00000323701 SND1Q7KZF4 910 aaKnown RBP eCLIP19.32■□□□□ 0.684e-6■■□□□ 12.7
USP39-201ENST00000323701 POLNQ7Z5Q5 900 aa19.32■□□□□ 0.68
USP39-201ENST00000323701 MYCBPAPQ8TBZ2 947 aa19.32■□□□□ 0.68
USP39-201ENST00000323701 VWCEQ96DN2 955 aa19.32■□□□□ 0.68
USP39-201ENST00000323701 SUSD3Q96L08 255 aa19.32■□□□□ 0.68
USP39-201ENST00000323701 UROC1Q96N76 676 aa19.32■□□□□ 0.68
USP39-201ENST00000323701 PKMYT1Q99640 499 aa19.32■□□□□ 0.68
USP39-201ENST00000323701 DCLK3Q9C098 648 aa19.32■□□□□ 0.68
USP39-201ENST00000323701 CDH9Q9ULB4 789 aa19.32■□□□□ 0.68
USP39-201ENST00000323701 TTC3P53804 2025 aa19.31■□□□□ 0.68
USP39-201ENST00000323701 BCAR1P56945 870 aa19.31■□□□□ 0.68
USP39-201ENST00000323701 HDXQ7Z353 690 aa19.31■□□□□ 0.68
USP39-201ENST00000323701 KRT222Q8N1A0 295 aa19.31■□□□□ 0.68
USP39-201ENST00000323701 ZNF333Q96JL9 665 aa19.31■□□□□ 0.68
USP39-201ENST00000323701 HSFY1Q96LI6 401 aa19.31■□□□□ 0.68
USP39-201ENST00000323701 SEZ6LQ9BYH1 1024 aa19.31■□□□□ 0.68
USP39-201ENST00000323701 ASNSD1Q9NWL6 643 aa19.31■□□□□ 0.68
USP39-201ENST00000323701 hCG_1818297A0A087WSY0 165 aa19.3■□□□□ 0.68
USP39-201ENST00000323701 AP1G2O75843 785 aa19.3■□□□□ 0.68
USP39-201ENST00000323701 OR1G1P47890 313 aa19.3■□□□□ 0.68
USP39-201ENST00000323701 RNASELQ05823 741 aaKnown RBP19.3■□□□□ 0.68
USP39-201ENST00000323701 DUPD1Q68J44 220 aa19.3■□□□□ 0.68
USP39-201ENST00000323701 SLC26A9Q7LBE3 791 aa19.3■□□□□ 0.68
USP39-201ENST00000323701 DEFB128Q7Z7B8 93 aa19.3■□□□□ 0.68
USP39-201ENST00000323701 CCDC105Q8IYK2 499 aa19.3■□□□□ 0.68
USP39-201ENST00000323701 FAM172AQ8WUF8 416 aa19.3■□□□□ 0.68
USP39-201ENST00000323701 HSPH1Q92598 858 aa19.3■□□□□ 0.68
USP39-201ENST00000323701 MYLPFQ96A32 169 aa19.3■□□□□ 0.68
USP39-201ENST00000323701 CASD1Q96PB1 797 aa19.3■□□□□ 0.68
USP39-201ENST00000323701 ERP44Q9BS26 406 aa19.3■□□□□ 0.68
USP39-201ENST00000323701 MAGEB5Q9BZ81 275 aa19.3■□□□□ 0.68
USP39-201ENST00000323701 NGRNQ9NPE2 291 aaKnown RBP19.3■□□□□ 0.68
USP39-201ENST00000323701 SLTMQ9NWH9 1034 aaKnown RBP eCLIP19.3■□□□□ 0.68
USP39-201ENST00000323701 RNF8O76064 485 aa19.3■□□□□ 0.68
USP39-201ENST00000323701 FAM200BP0CF97 657 aa19.3■□□□□ 0.68
USP39-201ENST00000323701 EPHB4P54760 987 aa19.3■□□□□ 0.68
USP39-201ENST00000323701 HDAC4P56524 1084 aa19.3■□□□□ 0.68
USP39-201ENST00000323701 PITX1P78337 314 aaPredicted RBP19.3■□□□□ 0.68
USP39-201ENST00000323701 MAP9Q49MG5 647 aa19.3■□□□□ 0.68
USP39-201ENST00000323701 OVOS1Q6IE37 1185 aa19.3■□□□□ 0.68
USP39-201ENST00000323701 FAM171BQ6P995 826 aa19.3■□□□□ 0.68
USP39-201ENST00000323701 HFE2Q6ZVN8 426 aa19.3■□□□□ 0.68
USP39-201ENST00000323701 TSEN2Q8NCE0 465 aaKnown RBP19.3■□□□□ 0.68
USP39-201ENST00000323701 SEPT8Q92599 483 aa19.3■□□□□ 0.68
USP39-201ENST00000323701 RBM41Q96IZ5 413 aaKnown RBP19.3■□□□□ 0.68
USP39-201ENST00000323701 C11orf84Q9BUA3 381 aaPredicted RBP19.3■□□□□ 0.68
USP39-201ENST00000323701 GPATCH2LQ9NWQ4 482 aa19.3■□□□□ 0.68
USP39-201ENST00000323701 SAE1Q9UBE0 346 aaPredicted RBP19.3■□□□□ 0.68
USP39-201ENST00000323701 GTF3C5Q9Y5Q8 519 aaPredicted RBP19.3■□□□□ 0.68
USP39-201ENST00000323701 DPYSL4O14531 572 aa19.29■□□□□ 0.68
USP39-201ENST00000323701 NRP1O14786 923 aa19.29■□□□□ 0.68
USP39-201ENST00000323701 COL6A1P12109 1028 aa19.29■□□□□ 0.68
USP39-201ENST00000323701 KDELR1P24390 212 aa19.29■□□□□ 0.68
USP39-201ENST00000323701 PCK1P35558 622 aa19.29■□□□□ 0.68
USP39-201ENST00000323701 PBX3P40426 434 aa19.29■□□□□ 0.68
USP39-201ENST00000323701 DHX34Q14147 1143 aaKnown RBP19.29■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms