RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 MGRN1O60291 552 aa15.31■□□□□ 0.04
TCOF1-201ENST00000323668 APOC2P02655 101 aa15.31■□□□□ 0.04
TCOF1-201ENST00000323668 CDC25CP30307 473 aa15.31■□□□□ 0.04
TCOF1-201ENST00000323668 RSPH3Q86UC2 560 aa15.31■□□□□ 0.04
TCOF1-201ENST00000323668 ZNF398Q8TD17 642 aa15.31■□□□□ 0.04
TCOF1-201ENST00000323668 LENG9Q96B70 501 aa15.31■□□□□ 0.04
TCOF1-201ENST00000323668 TMEM176AQ96HP8 235 aa15.31■□□□□ 0.04
TCOF1-201ENST00000323668 ANLNQ9NQW6 1124 aa15.31■□□□□ 0.04
TCOF1-201ENST00000323668 MTA2O94776 668 aa15.31■□□□□ 0.04
TCOF1-201ENST00000323668 ZCCHC18P0CG32 403 aa15.31■□□□□ 0.04
TCOF1-201ENST00000323668 RAP1GAPP47736 663 aa15.31■□□□□ 0.04
TCOF1-201ENST00000323668 GCLCP48506 637 aaPredicted RBP15.31■□□□□ 0.04
TCOF1-201ENST00000323668 CDK16Q00536 496 aa15.31■□□□□ 0.04
TCOF1-201ENST00000323668 EFTUD2Q15029 972 aaKnown RBP eCLIP15.31■□□□□ 0.042e-6■■■■■ 57.6
TCOF1-201ENST00000323668 KIF19Q2TAC6 998 aa15.31■□□□□ 0.04
TCOF1-201ENST00000323668 TEDDM1Q5T9Z0 273 aa15.31■□□□□ 0.04
TCOF1-201ENST00000323668 TDRD10Q5VZ19 366 aaKnown RBP15.31■□□□□ 0.04
TCOF1-201ENST00000323668 FITM2Q8N6M3 262 aa15.31■□□□□ 0.04
TCOF1-201ENST00000323668 C12orf50Q8NA57 414 aaPredicted RBP15.31■□□□□ 0.04
TCOF1-201ENST00000323668 RNF139Q8WU17 664 aa15.31■□□□□ 0.04
TCOF1-201ENST00000323668 ABTB1Q969K4 478 aaPredicted RBP15.31■□□□□ 0.04
TCOF1-201ENST00000323668 OTUD5Q96G74 571 aa15.31■□□□□ 0.04
TCOF1-201ENST00000323668 EDF1O60869 148 aaKnown RBP15.3■□□□□ 0.04
TCOF1-201ENST00000323668 NAIF1Q69YI7 327 aaPredicted RBP15.3■□□□□ 0.04
TCOF1-201ENST00000323668 LLGL2Q6P1M3 1020 aa15.3■□□□□ 0.04
TCOF1-201ENST00000323668 FAM172AQ8WUF8 416 aa15.3■□□□□ 0.04
TCOF1-201ENST00000323668 NAT9Q9BTE0 207 aa15.3■□□□□ 0.04
TCOF1-201ENST00000323668 ARMCX1Q9P291 453 aa15.3■□□□□ 0.04
TCOF1-201ENST00000323668 ARHGAP26Q9UNA1 814 aa15.3■□□□□ 0.04
TCOF1-201ENST00000323668 SDR42E2A6NKP2 422 aa15.3■□□□□ 0.04
TCOF1-201ENST00000323668 PEX5P50542 639 aa15.3■□□□□ 0.04
TCOF1-201ENST00000323668 TPI1P60174 286 aa15.3■□□□□ 0.04
TCOF1-201ENST00000323668 SAMD7Q7Z3H4 446 aa15.3■□□□□ 0.04
TCOF1-201ENST00000323668 CCNJLQ8IV13 435 aa15.3■□□□□ 0.04
TCOF1-201ENST00000323668 CCDC117Q8IWD4 279 aaPredicted RBP15.3■□□□□ 0.04
TCOF1-201ENST00000323668 TTC8Q8TAM2 541 aa15.3■□□□□ 0.04
TCOF1-201ENST00000323668 TFB1MQ8WVM0 346 aaKnown RBP15.3■□□□□ 0.04
TCOF1-201ENST00000323668 ZNF669Q96BR6 464 aaPredicted RBP15.3■□□□□ 0.04
TCOF1-201ENST00000323668 DCDC2Q9UHG0 476 aa15.3■□□□□ 0.04
TCOF1-201ENST00000323668 NOCTQ9UK39 431 aaKnown RBP15.3■□□□□ 0.04
TCOF1-201ENST00000323668 DNAJC16Q9Y2G8 782 aa15.3■□□□□ 0.04
TCOF1-201ENST00000323668 H0YGN5 161 aa15.3■□□□□ 0.04
TCOF1-201ENST00000323668 KDELR1P24390 212 aa15.3■□□□□ 0.04
TCOF1-201ENST00000323668 MIPP30301 263 aa15.3■□□□□ 0.04
TCOF1-201ENST00000323668 FDFT1P37268 417 aa15.3■□□□□ 0.04
TCOF1-201ENST00000323668 DPYSL3Q14195 570 aa15.3■□□□□ 0.04
TCOF1-201ENST00000323668 KBTBD12Q3ZCT8 623 aa15.3■□□□□ 0.04
TCOF1-201ENST00000323668 FKBP1CQ5VVH2 108 aa15.3■□□□□ 0.04
TCOF1-201ENST00000323668 CCDC60Q8IWA6 550 aaPredicted RBP15.3■□□□□ 0.04
TCOF1-201ENST00000323668 BBS5Q8N3I7 341 aa15.3■□□□□ 0.04
TCOF1-201ENST00000323668 FAM84AQ96KN4 292 aa15.3■□□□□ 0.04
TCOF1-201ENST00000323668 NFS1Q9Y697 457 aa15.3■□□□□ 0.04
TCOF1-201ENST00000323668 RPS6KL1Q9Y6S9 549 aa15.3■□□□□ 0.04
TCOF1-201ENST00000323668 ADGRA3Q8IWK6 1321 aa15.3■□□□□ 0.04
TCOF1-201ENST00000323668 ASB14A6NK59 587 aa15.29■□□□□ 0.04
TCOF1-201ENST00000323668 ITGAVP06756 1048 aa15.29■□□□□ 0.04
TCOF1-201ENST00000323668 CASP2P42575 452 aa15.29■□□□□ 0.04
TCOF1-201ENST00000323668 PDE1CQ14123 709 aaPredicted RBP15.29■□□□□ 0.04
TCOF1-201ENST00000323668 USP10Q14694 798 aaKnown RBP15.29■□□□□ 0.04
TCOF1-201ENST00000323668 DCAF12L1Q5VU92 463 aa15.29■□□□□ 0.04
TCOF1-201ENST00000323668 GLIS2Q9BZE0 524 aaPredicted RBP15.29■□□□□ 0.04
TCOF1-201ENST00000323668 TASP1Q9H6P5 420 aa15.29■□□□□ 0.04
TCOF1-201ENST00000323668 CYP3A43Q9HB55 503 aa15.29■□□□□ 0.04
TCOF1-201ENST00000323668 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP15.29■□□□□ 0.04
TCOF1-201ENST00000323668 FKBP6O75344 327 aa15.29■□□□□ 0.04
TCOF1-201ENST00000323668 RFC1P35251 1148 aaPredicted RBP15.29■□□□□ 0.04
TCOF1-201ENST00000323668 PAPOLAP51003 745 aaKnown RBP15.29■□□□□ 0.04
TCOF1-201ENST00000323668 CYP1B1Q16678 543 aa15.29■□□□□ 0.04
TCOF1-201ENST00000323668 UGCGQ16739 394 aa15.29■□□□□ 0.04
TCOF1-201ENST00000323668 ACCSLQ4AC99 568 aa15.29■□□□□ 0.04
TCOF1-201ENST00000323668 TWF2Q6IBS0 349 aaKnown RBP15.29■□□□□ 0.04
TCOF1-201ENST00000323668 EXT2Q93063 718 aa15.29■□□□□ 0.04
TCOF1-201ENST00000323668 ZBTB10Q96DT7 871 aa15.29■□□□□ 0.04
TCOF1-201ENST00000323668 ENTPD5O75356 428 aa15.29■□□□□ 0.04
TCOF1-201ENST00000323668 CNTFP26441 200 aa15.29■□□□□ 0.04
TCOF1-201ENST00000323668 RPL22P35268 128 aaKnown RBP15.29■□□□□ 0.04
TCOF1-201ENST00000323668 ACADSBP45954 432 aa15.29■□□□□ 0.04
TCOF1-201ENST00000323668 PARP6Q2NL67 630 aa15.29■□□□□ 0.04
TCOF1-201ENST00000323668 C16orf89Q6UX73 402 aa15.29■□□□□ 0.04
TCOF1-201ENST00000323668 HAUS8Q9BT25 410 aa15.29■□□□□ 0.04
TCOF1-201ENST00000323668 AP5M1Q9H0R1 490 aa15.29■□□□□ 0.04
TCOF1-201ENST00000323668 ST6GALNAC4Q9H4F1 302 aa15.29■□□□□ 0.04
TCOF1-201ENST00000323668 SPC25Q9HBM1 224 aa15.29■□□□□ 0.04
TCOF1-201ENST00000323668 ERAP1Q9NZ08 941 aa15.29■□□□□ 0.04
TCOF1-201ENST00000323668 BAZ2AQ9UIF9 1905 aaKnown RBP15.29■□□□□ 0.04
TCOF1-201ENST00000323668 CREB1P16220 341 aa15.29■□□□□ 0.04
TCOF1-201ENST00000323668 CHRNB2P17787 502 aa15.29■□□□□ 0.04
TCOF1-201ENST00000323668 PMLP29590 882 aa15.29■□□□□ 0.04
TCOF1-201ENST00000323668 MAPRE2Q15555 327 aa15.29■□□□□ 0.04
TCOF1-201ENST00000323668 UGP2Q16851 508 aa15.29■□□□□ 0.04
TCOF1-201ENST00000323668 PAPOLBQ9NRJ5 636 aaKnown RBP15.29■□□□□ 0.04
TCOF1-201ENST00000323668 RNF103-CHMP3A0A140T963 221 aa15.28■□□□□ 0.04
TCOF1-201ENST00000323668 C3orf70A6NLC5 250 aaPredicted RBP15.28■□□□□ 0.04
TCOF1-201ENST00000323668 CYP2C8P10632 490 aa15.28■□□□□ 0.04
TCOF1-201ENST00000323668 CLCN3P51790 818 aa15.28■□□□□ 0.04
TCOF1-201ENST00000323668 TMED1Q13445 227 aa15.28■□□□□ 0.04
TCOF1-201ENST00000323668 DCAF6Q58WW2 860 aa15.28■□□□□ 0.04
TCOF1-201ENST00000323668 ANGEL2Q5VTE6 544 aaKnown RBP15.28■□□□□ 0.04
TCOF1-201ENST00000323668 IZUMO2Q6UXV1 221 aa15.28■□□□□ 0.04
TCOF1-201ENST00000323668 RNF135Q8IUD6 432 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms