RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 KCNK10P57789 538 aa11.92□□□□□ -0.5
VPS39-201ENST00000318006 EFCAB12Q6NXP0 572 aa11.92□□□□□ -0.5
VPS39-201ENST00000318006 CCDC80Q76M96 950 aa11.92□□□□□ -0.5
VPS39-201ENST00000318006 MTMR8Q96EF0 704 aa11.92□□□□□ -0.5
VPS39-201ENST00000318006 RMND5BQ96G75 393 aaPredicted RBP11.92□□□□□ -0.5
VPS39-201ENST00000318006 WNK4Q96J92 1243 aa11.92□□□□□ -0.5
VPS39-201ENST00000318006 PARK7Q99497 189 aaKnown RBP11.92□□□□□ -0.5
VPS39-201ENST00000318006 TRIM62Q9BVG3 475 aa11.92□□□□□ -0.5
VPS39-201ENST00000318006 EPS8L2Q9H6S3 715 aa11.92□□□□□ -0.5
VPS39-201ENST00000318006 SARS2Q9NP81 518 aaKnown RBP11.92□□□□□ -0.5
VPS39-201ENST00000318006 SARSP49591 514 aaKnown RBP11.92□□□□□ -0.5
VPS39-201ENST00000318006 TAF1CQ15572 869 aaPredicted RBP11.92□□□□□ -0.5
VPS39-201ENST00000318006 CREG2Q8IUH2 290 aa11.92□□□□□ -0.5
VPS39-201ENST00000318006 GCNAQ96QF7 691 aa11.92□□□□□ -0.5
VPS39-201ENST00000318006 PAFAH2Q99487 392 aa11.92□□□□□ -0.5
VPS39-201ENST00000318006 TMEM79Q9BSE2 394 aa11.92□□□□□ -0.5
VPS39-201ENST00000318006 TLR10Q9BXR5 811 aa11.92□□□□□ -0.5
VPS39-201ENST00000318006 IL1RL2Q9HB29 575 aa11.92□□□□□ -0.5
VPS39-201ENST00000318006 UBAP1Q9NZ09 502 aa11.92□□□□□ -0.5
VPS39-201ENST00000318006 COMMD3-BMI1R4GMX3 469 aa11.92□□□□□ -0.5
VPS39-201ENST00000318006 UBA6A0AVT1 1052 aaPredicted RBP11.91□□□□□ -0.5
VPS39-201ENST00000318006 PSTPIP1O43586 416 aa11.91□□□□□ -0.5
VPS39-201ENST00000318006 SERPINB5P36952 375 aa11.91□□□□□ -0.5
VPS39-201ENST00000318006 CASP4P49662 377 aa11.91□□□□□ -0.5
VPS39-201ENST00000318006 RGS7P49802 495 aa11.91□□□□□ -0.5
VPS39-201ENST00000318006 NT5DC1Q5TFE4 455 aa11.91□□□□□ -0.5
VPS39-201ENST00000318006 APPL2Q8NEU8 664 aa11.91□□□□□ -0.5
VPS39-201ENST00000318006 ATG4AQ8WYN0 398 aa11.91□□□□□ -0.5
VPS39-201ENST00000318006 FAM162AQ96A26 154 aa11.91□□□□□ -0.5
VPS39-201ENST00000318006 OMA1Q96E52 524 aa11.91□□□□□ -0.5
VPS39-201ENST00000318006 CASS4Q9NQ75 786 aa11.91□□□□□ -0.5
VPS39-201ENST00000318006 GPRC5CQ9NQ84 441 aa11.91□□□□□ -0.5
VPS39-201ENST00000318006 PRKAG2Q9UGJ0 569 aa11.91□□□□□ -0.5
VPS39-201ENST00000318006 PCDHGB4Q9UN71 923 aa11.91□□□□□ -0.5
VPS39-201ENST00000318006 SOX13Q9UN79 622 aa11.91□□□□□ -0.5
VPS39-201ENST00000318006 MROH7Q68CQ1 1323 aa11.91□□□□□ -0.5
VPS39-201ENST00000318006 KANSL1LA0AUZ9 987 aa11.91□□□□□ -0.5
VPS39-201ENST00000318006 C3orf70A6NLC5 250 aaPredicted RBP11.91□□□□□ -0.5
VPS39-201ENST00000318006 FCHO1O14526 889 aa11.91□□□□□ -0.5
VPS39-201ENST00000318006 GAS2O43903 313 aaKnown RBP11.91□□□□□ -0.5
VPS39-201ENST00000318006 PSMG1O95456 288 aa11.91□□□□□ -0.5
VPS39-201ENST00000318006 TCF7P36402 384 aaPredicted RBP11.91□□□□□ -0.5
VPS39-201ENST00000318006 PEX5P50542 639 aa11.91□□□□□ -0.5
VPS39-201ENST00000318006 IFI35P80217 286 aaPredicted RBP11.91□□□□□ -0.5
VPS39-201ENST00000318006 GPRC5AQ8NFJ5 357 aa11.91□□□□□ -0.5
VPS39-201ENST00000318006 SIK2Q9H0K1 926 aa11.91□□□□□ -0.5
VPS39-201ENST00000318006 ZNF556Q9HAH1 456 aa11.91□□□□□ -0.5
VPS39-201ENST00000318006 DMAP1Q9NPF5 467 aaPredicted RBP11.91□□□□□ -0.5
VPS39-201ENST00000318006 DIABLOQ9NR28 239 aa11.91□□□□□ -0.5
VPS39-201ENST00000318006 CDV3Q9UKY7 258 aaKnown RBP11.91□□□□□ -0.5
VPS39-201ENST00000318006 PSMD3O43242 534 aa11.91□□□□□ -0.5
VPS39-201ENST00000318006 ASNA1O43681 348 aa11.91□□□□□ -0.5
VPS39-201ENST00000318006 ZNF23P17027 643 aa11.91□□□□□ -0.5
VPS39-201ENST00000318006 TNFRSF8P28908 595 aa11.91□□□□□ -0.5
VPS39-201ENST00000318006 ZCCHC7Q8N3Z6 543 aaKnown RBP11.91□□□□□ -0.5
VPS39-201ENST00000318006 FBXO36Q8NEA4 188 aa11.91□□□□□ -0.5
VPS39-201ENST00000318006 FEZF2Q8TBJ5 459 aa11.91□□□□□ -0.5
VPS39-201ENST00000318006 PTPRN2Q92932 1015 aa11.91□□□□□ -0.5
VPS39-201ENST00000318006 DCDC2Q9UHG0 476 aa11.91□□□□□ -0.5
VPS39-201ENST00000318006 DNAJC16Q9Y2G8 782 aa11.91□□□□□ -0.5
VPS39-201ENST00000318006 C1orf232A0A0U1RR37 186 aa11.9□□□□□ -0.5
VPS39-201ENST00000318006 FOXN3O00409 490 aaPredicted RBP11.9□□□□□ -0.5
VPS39-201ENST00000318006 SNX3O60493 162 aa11.9□□□□□ -0.5
VPS39-201ENST00000318006 TFRCP02786 760 aaKnown RBP11.9□□□□□ -0.5
VPS39-201ENST00000318006 RARBP10826 455 aa11.9□□□□□ -0.5
VPS39-201ENST00000318006 HOXD10P28358 340 aa11.9□□□□□ -0.5
VPS39-201ENST00000318006 STIP1P31948 543 aaKnown RBP11.9□□□□□ -0.5
VPS39-201ENST00000318006 MMP14P50281 582 aa11.9□□□□□ -0.5
VPS39-201ENST00000318006 EPC2Q52LR7 807 aa11.9□□□□□ -0.5
VPS39-201ENST00000318006 COBLL1Q53SF7 1204 aa11.9□□□□□ -0.5
VPS39-201ENST00000318006 BTBD8Q5XKL5 378 aa11.9□□□□□ -0.5
VPS39-201ENST00000318006 MON2Q7Z3U7 1717 aa11.9□□□□□ -0.5
VPS39-201ENST00000318006 AGAP3Q96P47 875 aa11.9□□□□□ -0.5
VPS39-201ENST00000318006 NR1H4Q96RI1 486 aaPredicted RBP11.9□□□□□ -0.5
VPS39-201ENST00000318006 GORASP1Q9BQQ3 440 aa11.9□□□□□ -0.5
VPS39-201ENST00000318006 NT5C1AQ9BXI3 368 aa11.9□□□□□ -0.5
VPS39-201ENST00000318006 COPG2Q9UBF2 871 aa11.9□□□□□ -0.5
VPS39-201ENST00000318006 H2AFYO75367 372 aaKnown RBP11.9□□□□□ -0.5
VPS39-201ENST00000318006 CBX6O95503 412 aa11.9□□□□□ -0.5
VPS39-201ENST00000318006 MOCS2O96007 188 aaPredicted RBP11.9□□□□□ -0.5
VPS39-201ENST00000318006 BGNP21810 368 aa11.9□□□□□ -0.5
VPS39-201ENST00000318006 NFKBIAP25963 317 aa11.9□□□□□ -0.5
VPS39-201ENST00000318006 SOX11P35716 441 aa11.9□□□□□ -0.5
VPS39-201ENST00000318006 ITGB3BPQ13352 177 aaPredicted RBP11.9□□□□□ -0.5
VPS39-201ENST00000318006 GPAT2Q6NUI2 795 aa11.9□□□□□ -0.5
VPS39-201ENST00000318006 TLK2Q86UE8 772 aa11.9□□□□□ -0.5
VPS39-201ENST00000318006 CBWD2Q8IUF1 395 aa11.9□□□□□ -0.5
VPS39-201ENST00000318006 CLVS1Q8IUQ0 354 aaPredicted RBP11.9□□□□□ -0.5
VPS39-201ENST00000318006 DEFB107AQ8IZN7 70 aa11.9□□□□□ -0.5
VPS39-201ENST00000318006 SLC25A41Q8N5S1 370 aa11.9□□□□□ -0.5
VPS39-201ENST00000318006 FAM71DQ8N9W8 422 aa11.9□□□□□ -0.5
VPS39-201ENST00000318006 ELMO2Q96JJ3 720 aa11.9□□□□□ -0.5
VPS39-201ENST00000318006 DCUN1D5Q9BTE7 237 aa11.9□□□□□ -0.5
VPS39-201ENST00000318006 KATNAL1Q9BW62 490 aa11.9□□□□□ -0.5
VPS39-201ENST00000318006 FRMD8P1Q9BZ68 369 aaPredicted RBP11.9□□□□□ -0.5
VPS39-201ENST00000318006 ARHGEF38Q9NXL2 777 aa11.9□□□□□ -0.5
VPS39-201ENST00000318006 MPP6Q9NZW5 540 aa11.9□□□□□ -0.5
VPS39-201ENST00000318006 LIN7AO14910 233 aaPredicted RBP11.9□□□□□ -0.5
VPS39-201ENST00000318006 BNIP3LO60238 219 aa11.9□□□□□ -0.5
VPS39-201ENST00000318006 CSPG5O95196 566 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms