RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 SH3BGRL2Q9UJC5 107 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 PITPNM2Q9BZ72 1349 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 UBA6A0AVT1 1052 aaPredicted RBP7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 DENND3A2RUS2 1198 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 H7C1W4 665 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 NPPAP01160 153 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 HLA-DQA2P01906 255 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 RALAP11233 206 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 ZNF23P17027 643 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 OMPP47874 163 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 UBE2KP61086 200 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 PPP2CBP62714 309 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 ZNF674Q2M3X9 581 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 ARHGAP15Q53QZ3 475 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 CRELD2Q6UXH1 353 aaPredicted RBP7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 UNC13DQ70J99 1090 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 TOR1AIP2Q8NFQ8 470 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 PIK3R3Q92569 461 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 EPB41L1Q9H4G0 881 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 KATNA1O75449 491 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 TSPAN19P0C672 248 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 MYL12AP19105 171 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 CXCR5P32302 372 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 PPM1AP35813 382 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 TGM4P49221 684 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 CYP2J2P51589 502 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 EPHB4P54760 987 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 RASSF7Q02833 373 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 RAPSNQ13702 412 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 NR1D2Q14995 579 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 KRT31Q15323 416 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 CERCAMQ5T4B2 595 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 EZH1Q92800 747 aaPredicted RBP7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 RIC8BQ9NVN3 520 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 SLC8A2Q9UPR5 921 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 IRAK3Q9Y616 596 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 RRN3P2A6NIE6 340 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 RASA4BC9J798 803 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 H3BNX3 289 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 ZNF197O14709 1029 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 FLRT2O43155 660 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 RASA4O43374 803 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 ERN1O75460 977 aaKnown RBP7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 IPO13O94829 963 aaKnown RBP7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 SLC39A6Q13433 755 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 MAPRE2Q15555 327 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 FAAH2Q6GMR7 532 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 GAS2L3Q86XJ1 694 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 PAGR1Q9BTK6 254 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 MRPL44Q9H9J2 332 aaKnown RBP7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 ARHGEF10LQ9HCE6 1279 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 PDP2Q9P2J9 529 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 PTPRKQ15262 1439 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 ADGRA2Q96PE1 1338 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 C2orf81A6NN90 581 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 ZNF705GA8MUZ8 300 aaPredicted RBP7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 INO80B-WBP1J3KQ70 363 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 PQBP1O60828 265 aaKnown RBP7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 PDGFRBP09619 1106 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 AMPD1P23109 780 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 NOS3P29474 1203 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 HSPA13P48723 471 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 PIK3CGP48736 1102 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 TPTEP56180 551 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 IL5RAQ01344 420 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 PKN2Q16513 984 aaKnown RBP7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 ABCB5Q2M3G0 1257 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 TTC23LQ6PF05 361 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 ISLR2Q6UXK2 745 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 LRRC74BQ6ZQY2 392 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 TBC1D9Q6ZT07 1266 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 ATG9AQ7Z3C6 839 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 PLA2G4DQ86XP0 818 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 SETD9Q8NE22 299 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 NPLOC4Q8TAT6 608 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 CRELD1Q96HD1 420 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 FAM118BQ9BPY3 351 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 GOLPH3LQ9H4A5 285 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 TBCCD1Q9NVR7 557 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 SNX14Q9Y5W7 946 aa7.89□□□□□ -1.15
LIMCH1-201ENST00000313860 MIA2Q96PC5 1412 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 MAGEB2O15479 319 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 CYP7B1O75881 506 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 CPA3P15088 417 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 MAGP20916 626 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 GSTM2P28161 218 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 GTF2E2P29084 291 aaKnown RBP7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 ARSJQ5FYB0 599 aaPredicted RBP7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 HAGHLQ6PII5 290 aaPredicted RBP7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 DGLUCYQ7Z3D6 616 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 KCNK18Q7Z418 384 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 SLC51BQ86UW2 128 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 TIGD4Q8IY51 512 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 DNAJA4Q8WW22 397 aaPredicted RBP7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 SETDB2Q96T68 719 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 SIK2Q9H0K1 926 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 ANTXR1Q9H6X2 564 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 NOL11Q9H8H0 719 aaKnown RBP7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 RDH8Q9NYR8 311 aa7.88□□□□□ -1.15
LIMCH1-201ENST00000313860 KLF15Q9UIH9 416 aa7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms