RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 SYT12Q8IV01 421 aa15.76■□□□□ 0.11
CCDC88B-201ENST00000301897 CCDC65Q8IXS2 484 aa15.76■□□□□ 0.11
CCDC88B-201ENST00000301897 CCDC33Q8N5R6 958 aa15.76■□□□□ 0.11
CCDC88B-201ENST00000301897 KBTBD7Q8WVZ9 684 aa15.76■□□□□ 0.11
CCDC88B-201ENST00000301897 PIGKQ92643 395 aa15.76■□□□□ 0.11
CCDC88B-201ENST00000301897 OTUB2Q96DC9 234 aa15.76■□□□□ 0.11
CCDC88B-201ENST00000301897 MMS19Q96T76 1030 aa15.76■□□□□ 0.11
CCDC88B-201ENST00000301897 ADAM33Q9BZ11 813 aa15.76■□□□□ 0.11
CCDC88B-201ENST00000301897 SNX25Q9H3E2 840 aa15.76■□□□□ 0.11
CCDC88B-201ENST00000301897 SLC32A1Q9H598 525 aa15.76■□□□□ 0.11
CCDC88B-201ENST00000301897 CRTAC1Q9NQ79 661 aa15.76■□□□□ 0.11
CCDC88B-201ENST00000301897 PANK4Q9NVE7 773 aa15.76■□□□□ 0.11
CCDC88B-201ENST00000301897 FBXO2Q9UK22 296 aaPredicted RBP15.76■□□□□ 0.11
CCDC88B-201ENST00000301897 A0A0A0MRY4 1105 aa15.75■□□□□ 0.11
CCDC88B-201ENST00000301897 TACC1O75410 805 aa15.75■□□□□ 0.11
CCDC88B-201ENST00000301897 PRPF6O94906 941 aaKnown RBP15.75■□□□□ 0.11
CCDC88B-201ENST00000301897 KAT7O95251 611 aa15.75■□□□□ 0.11
CCDC88B-201ENST00000301897 KLF8O95600 359 aaPredicted RBP15.75■□□□□ 0.11
CCDC88B-201ENST00000301897 OLFM2O95897 454 aa15.75■□□□□ 0.11
CCDC88B-201ENST00000301897 BCKDHBP21953 392 aa15.75■□□□□ 0.11
CCDC88B-201ENST00000301897 LMO2P25791 158 aa15.75■□□□□ 0.11
CCDC88B-201ENST00000301897 GRIA2P42262 883 aa15.75■□□□□ 0.11
CCDC88B-201ENST00000301897 IRX4P78413 519 aa15.75■□□□□ 0.11
CCDC88B-201ENST00000301897 GAB4Q2WGN9 574 aa15.75■□□□□ 0.11
CCDC88B-201ENST00000301897 NUDT18Q6ZVK8 323 aa15.75■□□□□ 0.11
CCDC88B-201ENST00000301897 TRMT11Q7Z4G4 463 aaKnown RBP15.75■□□□□ 0.11
CCDC88B-201ENST00000301897 TTC30AQ86WT1 665 aa15.75■□□□□ 0.11
CCDC88B-201ENST00000301897 WDR49Q8IV35 697 aa15.75■□□□□ 0.11
CCDC88B-201ENST00000301897 IL17RCQ8NAC3 791 aa15.75■□□□□ 0.11
CCDC88B-201ENST00000301897 PDZD8Q8NEN9 1154 aa15.75■□□□□ 0.11
CCDC88B-201ENST00000301897 KCNV2Q8TDN2 545 aa15.75■□□□□ 0.11
CCDC88B-201ENST00000301897 PCED1BQ96HM7 432 aa15.75■□□□□ 0.11
CCDC88B-201ENST00000301897 LRRC27Q9C0I9 530 aa15.75■□□□□ 0.11
CCDC88B-201ENST00000301897 ELOVL4Q9GZR5 314 aa15.75■□□□□ 0.11
CCDC88B-201ENST00000301897 BCCIPQ9P287 314 aaKnown RBP eCLIP15.75■□□□□ 0.11
CCDC88B-201ENST00000301897 ZMIZ1Q9ULJ6 1067 aa15.75■□□□□ 0.11
CCDC88B-201ENST00000301897 WASF3Q9UPY6 502 aa15.75■□□□□ 0.11
CCDC88B-201ENST00000301897 CPQQ9Y646 472 aa15.75■□□□□ 0.11
CCDC88B-201ENST00000301897 CLIC4Q9Y696 253 aa15.75■□□□□ 0.11
CCDC88B-201ENST00000301897 MORC2Q9Y6X9 1032 aaPredicted RBP15.75■□□□□ 0.11
CCDC88B-201ENST00000301897 DSPP15924 2871 aaKnown RBP15.74■□□□□ 0.11
CCDC88B-201ENST00000301897 MYOFQ9NZM1 2061 aa15.74■□□□□ 0.11
CCDC88B-201ENST00000301897 AKAP13Q12802 2813 aa15.74■□□□□ 0.11
CCDC88B-201ENST00000301897 E2F8A0AVK6 867 aa15.74■□□□□ 0.11
CCDC88B-201ENST00000301897 VPS37CA5D8V6 355 aaPredicted RBP15.74■□□□□ 0.11
CCDC88B-201ENST00000301897 C1QTNF9BB2RNN3 333 aa15.74■□□□□ 0.11
CCDC88B-201ENST00000301897 F8VP50 259 aa15.74■□□□□ 0.11
CCDC88B-201ENST00000301897 HCRTO43612 131 aa15.74■□□□□ 0.11
CCDC88B-201ENST00000301897 OAS1P00973 400 aaKnown RBP15.74■□□□□ 0.11
CCDC88B-201ENST00000301897 PDGFRBP09619 1106 aa15.74■□□□□ 0.11
CCDC88B-201ENST00000301897 C1QTNF9P0C862 333 aa15.74■□□□□ 0.11
CCDC88B-201ENST00000301897 ADH5P11766 374 aa15.74■□□□□ 0.11
CCDC88B-201ENST00000301897 GNL1P36915 607 aaPredicted RBP15.74■□□□□ 0.11
CCDC88B-201ENST00000301897 USP46P62068 366 aa15.74■□□□□ 0.11
CCDC88B-201ENST00000301897 ZXDBP98169 803 aa15.74■□□□□ 0.11
CCDC88B-201ENST00000301897 UAP1L1Q3KQV9 507 aa15.74■□□□□ 0.11
CCDC88B-201ENST00000301897 TRIM61Q5EBN2 209 aa15.74■□□□□ 0.11
CCDC88B-201ENST00000301897 RABEPKQ7Z6M1 372 aa15.74■□□□□ 0.11
CCDC88B-201ENST00000301897 ALLCQ8N6M5 410 aa15.74■□□□□ 0.11
CCDC88B-201ENST00000301897 TXNDC5Q8NBS9 432 aaKnown RBP15.74■□□□□ 0.11
CCDC88B-201ENST00000301897 OR5B17Q8NGF7 314 aa15.74■□□□□ 0.11
CCDC88B-201ENST00000301897 OVCA2Q8WZ82 227 aa15.74■□□□□ 0.11
CCDC88B-201ENST00000301897 ARHGEF4Q9NR80 690 aa15.74■□□□□ 0.11
CCDC88B-201ENST00000301897 CFAP97Q9P2B7 532 aa15.74■□□□□ 0.11
CCDC88B-201ENST00000301897 UPK3BL1B0FP48 263 aa15.73■□□□□ 0.11
CCDC88B-201ENST00000301897 PATE3B3GLJ2 98 aa15.73■□□□□ 0.11
CCDC88B-201ENST00000301897 UPK3BL2E5RIL1 263 aa15.73■□□□□ 0.11
CCDC88B-201ENST00000301897 RTN3O95197 1032 aaPredicted RBP15.73■□□□□ 0.11
CCDC88B-201ENST00000301897 ABL1P00519 1130 aa15.73■□□□□ 0.11
CCDC88B-201ENST00000301897 RDXP35241 583 aaKnown RBP15.73■□□□□ 0.11
CCDC88B-201ENST00000301897 TIE1P35590 1138 aa15.73■□□□□ 0.11
CCDC88B-201ENST00000301897 TAF10Q12962 218 aa15.73■□□□□ 0.11
CCDC88B-201ENST00000301897 MDH1BQ5I0G3 518 aa15.73■□□□□ 0.11
CCDC88B-201ENST00000301897 LYSMD4Q5XG99 296 aa15.73■□□□□ 0.11
CCDC88B-201ENST00000301897 BTBD8Q5XKL5 378 aa15.73■□□□□ 0.11
CCDC88B-201ENST00000301897 RHBDF2Q6PJF5 856 aa15.73■□□□□ 0.11
CCDC88B-201ENST00000301897 TMEM92Q6UXU6 159 aa15.73■□□□□ 0.11
CCDC88B-201ENST00000301897 HS2ST1Q7LGA3 356 aa15.73■□□□□ 0.11
CCDC88B-201ENST00000301897 TRAPPC11Q7Z392 1133 aa15.73■□□□□ 0.11
CCDC88B-201ENST00000301897 CEP76Q8TAP6 659 aa15.73■□□□□ 0.11
CCDC88B-201ENST00000301897 FAM84AQ96KN4 292 aa15.73■□□□□ 0.11
CCDC88B-201ENST00000301897 DUSP9Q99956 384 aaKnown RBP15.73■□□□□ 0.11
CCDC88B-201ENST00000301897 RNF38Q9H0F5 515 aa15.73■□□□□ 0.11
CCDC88B-201ENST00000301897 HSPBP1Q9NZL4 362 aa15.73■□□□□ 0.11
CCDC88B-201ENST00000301897 CIZ1Q9ULV3 898 aaPredicted RBP15.73■□□□□ 0.11
CCDC88B-201ENST00000301897 ATP8B3O60423 1300 aa15.72■□□□□ 0.11
CCDC88B-201ENST00000301897 PTPRJQ12913 1337 aa15.72■□□□□ 0.11
CCDC88B-201ENST00000301897 SGK1O00141 431 aa15.72■□□□□ 0.11
CCDC88B-201ENST00000301897 EIF3DO15371 548 aaKnown RBP eCLIP15.72■□□□□ 0.11
CCDC88B-201ENST00000301897 AP5Z1O43299 807 aa15.72■□□□□ 0.11
CCDC88B-201ENST00000301897 MBL2P11226 248 aaPredicted RBP15.72■□□□□ 0.11
CCDC88B-201ENST00000301897 PTPN1P18031 435 aaKnown RBP15.72■□□□□ 0.11
CCDC88B-201ENST00000301897 YWHAQP27348 245 aa15.72■□□□□ 0.11
CCDC88B-201ENST00000301897 KIR2DL1P43626 348 aaPredicted RBP15.72■□□□□ 0.11
CCDC88B-201ENST00000301897 TNNC1P63316 161 aa15.72■□□□□ 0.11
CCDC88B-201ENST00000301897 GAD2Q05329 585 aa15.72■□□□□ 0.11
CCDC88B-201ENST00000301897 SCARA3Q6AZY7 606 aa15.72■□□□□ 0.11
CCDC88B-201ENST00000301897 SLC23A3Q6PIS1 610 aa15.72■□□□□ 0.11
CCDC88B-201ENST00000301897 SLC36A4Q6YBV0 504 aa15.72■□□□□ 0.11
CCDC88B-201ENST00000301897 CBWD2Q8IUF1 395 aa15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms