RNA–Protein interactions for RNA: ENST00000296051.6

HPS3-201, Transcript of HPS3, biogenesis of lysosomal organelles complex 2 subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HPS3, Length 4,665 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3-201ENST00000296051 RPA3P35244 121 aaPredicted RBP13.96□□□□□ -0.17
HPS3-201ENST00000296051 CCNHP51946 323 aaPredicted RBP13.96□□□□□ -0.17
HPS3-201ENST00000296051 XRCC4Q13426 336 aa13.96□□□□□ -0.17
HPS3-201ENST00000296051 RAB44Q7Z6P3 723 aaPredicted RBP13.96□□□□□ -0.17
HPS3-201ENST00000296051 TLK2Q86UE8 772 aa13.96□□□□□ -0.17
HPS3-201ENST00000296051 CKAP2Q8WWK9 683 aa13.96□□□□□ -0.17
HPS3-201ENST00000296051 GMCL1Q96IK5 515 aa13.96□□□□□ -0.17
HPS3-201ENST00000296051 PGK1P00558 417 aa13.96□□□□□ -0.17
HPS3-201ENST00000296051 ATICP31939 592 aa13.96□□□□□ -0.17
HPS3-201ENST00000296051 PTDSS1P48651 473 aaKnown RBP13.96□□□□□ -0.17
HPS3-201ENST00000296051 ATP13A4Q4VNC1 1196 aa13.96□□□□□ -0.17
HPS3-201ENST00000296051 HEATR6Q6AI08 1181 aaKnown RBP13.96□□□□□ -0.17
HPS3-201ENST00000296051 LLGL2Q6P1M3 1020 aa13.96□□□□□ -0.17
HPS3-201ENST00000296051 CXCL17Q6UXB2 119 aa13.96□□□□□ -0.17
HPS3-201ENST00000296051 ANKEF1Q9NU02 776 aa13.96□□□□□ -0.17
HPS3-201ENST00000296051 TSR3Q9UJK0 312 aaKnown RBP13.96□□□□□ -0.17
HPS3-201ENST00000296051 NWD1Q149M9 1564 aa13.96□□□□□ -0.18
HPS3-201ENST00000296051 GLTPD2A6NH11 291 aa13.96□□□□□ -0.18
HPS3-201ENST00000296051 HNRNPCL1O60812 293 aaKnown RBP13.96□□□□□ -0.18
HPS3-201ENST00000296051 CKMP06732 381 aa13.96□□□□□ -0.18
HPS3-201ENST00000296051 INSRRP14616 1297 aa13.96□□□□□ -0.18
HPS3-201ENST00000296051 PDGFRAP16234 1089 aa13.96□□□□□ -0.18
HPS3-201ENST00000296051 BTG3Q14201 252 aaPredicted RBP13.96□□□□□ -0.18
HPS3-201ENST00000296051 PRAMEF19Q5SWL8 479 aa13.96□□□□□ -0.18
HPS3-201ENST00000296051 SV2AQ7L0J3 742 aa13.96□□□□□ -0.18
HPS3-201ENST00000296051 EMC1Q8N766 993 aa13.96□□□□□ -0.18
HPS3-201ENST00000296051 CLMNQ96JQ2 1002 aa13.96□□□□□ -0.18
HPS3-201ENST00000296051 F8W8V4 182 aa13.95□□□□□ -0.18
HPS3-201ENST00000296051 BANF1O75531 89 aa13.95□□□□□ -0.18
HPS3-201ENST00000296051 UNC5CO95185 931 aa13.95□□□□□ -0.18
HPS3-201ENST00000296051 SMARCA1P28370 1054 aa13.95□□□□□ -0.18
HPS3-201ENST00000296051 TM4SF1P30408 202 aa13.95□□□□□ -0.18
HPS3-201ENST00000296051 AP1B1Q10567 949 aa13.95□□□□□ -0.18
HPS3-201ENST00000296051 SGSM1Q2NKQ1 1148 aa13.95□□□□□ -0.18
HPS3-201ENST00000296051 DNAL1Q4LDG9 190 aa13.95□□□□□ -0.18
HPS3-201ENST00000296051 SOCS4Q8WXH5 440 aa13.95□□□□□ -0.18
HPS3-201ENST00000296051 IGSF9BQ9UPX0 1349 aa13.95□□□□□ -0.18
HPS3-201ENST00000296051 A0A087WZ62 844 aa13.95□□□□□ -0.18
HPS3-201ENST00000296051 PRR23AA6NEV1 266 aa13.95□□□□□ -0.18
HPS3-201ENST00000296051 MEI4A8MW99 385 aa13.95□□□□□ -0.18
HPS3-201ENST00000296051 DFFAO00273 331 aa13.95□□□□□ -0.18
HPS3-201ENST00000296051 SNRPAP09012 282 aaKnown RBP13.95□□□□□ -0.18
HPS3-201ENST00000296051 ATP4AP20648 1035 aa13.95□□□□□ -0.18
HPS3-201ENST00000296051 ADCYAP1R1P41586 468 aa13.95□□□□□ -0.18
HPS3-201ENST00000296051 OTUD4Q01804 1114 aaKnown RBP13.95□□□□□ -0.18
HPS3-201ENST00000296051 RARS2Q5T160 578 aaKnown RBP13.95□□□□□ -0.18
HPS3-201ENST00000296051 TRIM72Q6ZMU5 477 aa13.95□□□□□ -0.18
HPS3-201ENST00000296051 SCUBE1Q8IWY4 988 aa13.95□□□□□ -0.18
HPS3-201ENST00000296051 ACTL9Q8TC94 416 aa13.95□□□□□ -0.18
HPS3-201ENST00000296051 DNAJB3Q8WWF6 145 aa13.95□□□□□ -0.18
HPS3-201ENST00000296051 SPATA17Q96L03 361 aa13.95□□□□□ -0.18
HPS3-201ENST00000296051 CNBD2Q96M20 576 aa13.95□□□□□ -0.18
HPS3-201ENST00000296051 FDXACB1Q9BRP7 624 aaPredicted RBP13.95□□□□□ -0.18
HPS3-201ENST00000296051 POLR3CQ9BUI4 534 aaPredicted RBP13.95□□□□□ -0.18
HPS3-201ENST00000296051 OLA1Q9NTK5 396 aaKnown RBP13.95□□□□□ -0.18
HPS3-201ENST00000296051 DNPEPQ9ULA0 475 aa13.95□□□□□ -0.18
HPS3-201ENST00000296051 FER1L4A9Z1Z3 1794 aa13.95□□□□□ -0.18
HPS3-201ENST00000296051 TTC36A6NLP5 189 aa13.95□□□□□ -0.18
HPS3-201ENST00000296051 KRT36O76013 467 aa13.95□□□□□ -0.18
HPS3-201ENST00000296051 GZMAP12544 262 aa13.95□□□□□ -0.18
HPS3-201ENST00000296051 HSD17B4P51659 736 aa13.95□□□□□ -0.18
HPS3-201ENST00000296051 CENPCQ03188 943 aa13.95□□□□□ -0.18
HPS3-201ENST00000296051 PPP3CAQ08209 521 aa13.95□□□□□ -0.18
HPS3-201ENST00000296051 LAYNQ6UX15 382 aa13.95□□□□□ -0.18
HPS3-201ENST00000296051 FITM2Q8N6M3 262 aa13.95□□□□□ -0.18
HPS3-201ENST00000296051 IDI2Q9BXS1 227 aa13.95□□□□□ -0.18
HPS3-201ENST00000296051 UPF3AQ9H1J1 476 aaKnown RBP13.95□□□□□ -0.18
HPS3-201ENST00000296051 NMRK2Q9NPI5 230 aa13.95□□□□□ -0.18
HPS3-201ENST00000296051 URODP06132 367 aa13.94□□□□□ -0.18
HPS3-201ENST00000296051 MMP13P45452 471 aa13.94□□□□□ -0.18
HPS3-201ENST00000296051 DSG1Q02413 1049 aa13.94□□□□□ -0.18
HPS3-201ENST00000296051 METTL7BQ6UX53 244 aa13.94□□□□□ -0.18
HPS3-201ENST00000296051 RIBC1Q8N443 379 aaPredicted RBP13.94□□□□□ -0.18
HPS3-201ENST00000296051 RNF148Q8N7C7 305 aa13.94□□□□□ -0.18
HPS3-201ENST00000296051 ZNF75CPQ92670 426 aaPredicted RBP13.94□□□□□ -0.18
HPS3-201ENST00000296051 EME1Q96AY2 570 aa13.94□□□□□ -0.18
HPS3-201ENST00000296051 HES6Q96HZ4 224 aa13.94□□□□□ -0.18
HPS3-201ENST00000296051 HPDLQ96IR7 371 aa13.94□□□□□ -0.18
HPS3-201ENST00000296051 DCLK3Q9C098 648 aa13.94□□□□□ -0.18
HPS3-201ENST00000296051 DDX56Q9NY93 547 aaKnown RBP13.94□□□□□ -0.18
HPS3-201ENST00000296051 FCHO1O14526 889 aa13.94□□□□□ -0.18
HPS3-201ENST00000296051 KIF19Q2TAC6 998 aa13.94□□□□□ -0.18
HPS3-201ENST00000296051 TTC23LQ6PF05 361 aa13.94□□□□□ -0.18
HPS3-201ENST00000296051 C16orf87Q6PH81 154 aa13.94□□□□□ -0.18
HPS3-201ENST00000296051 ZCCHC23Q6ZST2 131 aa13.94□□□□□ -0.18
HPS3-201ENST00000296051 TRIM67Q6ZTA4 783 aa13.94□□□□□ -0.18
HPS3-201ENST00000296051 STKLD1Q8NE28 680 aa13.94□□□□□ -0.18
HPS3-201ENST00000296051 PABPC5Q96DU9 382 aaKnown RBP13.94□□□□□ -0.18
HPS3-201ENST00000296051 NT5C1AQ9BXI3 368 aa13.94□□□□□ -0.18
HPS3-201ENST00000296051 PXMP2Q9NR77 195 aa13.94□□□□□ -0.18
HPS3-201ENST00000296051 DDX18Q9NVP1 670 aaKnown RBP13.94□□□□□ -0.18
HPS3-201ENST00000296051 GGA2Q9UJY4 613 aa13.94□□□□□ -0.18
HPS3-201ENST00000296051 PACSIN3Q9UKS6 424 aa13.94□□□□□ -0.18
HPS3-201ENST00000296051 AURKCQ9UQB9 309 aa13.94□□□□□ -0.18
HPS3-201ENST00000296051 TMEM88BA6NKF7 163 aa13.94□□□□□ -0.18
HPS3-201ENST00000296051 CES2O00748 559 aa13.94□□□□□ -0.18
HPS3-201ENST00000296051 ITGB3P05106 788 aa13.94□□□□□ -0.18
HPS3-201ENST00000296051 MCF2P10911 925 aa13.94□□□□□ -0.18
HPS3-201ENST00000296051 PRKCIP41743 596 aa13.94□□□□□ -0.18
HPS3-201ENST00000296051 NUMBP49757 651 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms