RNA–Protein interactions for RNA: ENST00000292478.8

PTCD1-201, Transcript of pentatricopeptide repeat domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD1, Length 5,582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1-201ENST00000292478 DDX53Q86TM3 631 aaKnown RBP13.25□□□□□ -0.29
PTCD1-201ENST00000292478 TAGAPQ8N103 731 aa13.25□□□□□ -0.29
PTCD1-201ENST00000292478 EPS8L3Q8TE67 593 aaKnown RBP13.25□□□□□ -0.29
PTCD1-201ENST00000292478 NEUROG2Q9H2A3 272 aa13.25□□□□□ -0.29
PTCD1-201ENST00000292478 MAGEB16A2A368 324 aa13.25□□□□□ -0.29
PTCD1-201ENST00000292478 KIF1CO43896 1103 aaKnown RBP13.25□□□□□ -0.29
PTCD1-201ENST00000292478 CCDC15Q0P6D6 951 aa13.25□□□□□ -0.29
PTCD1-201ENST00000292478 FBXW10Q5XX13 1052 aa13.25□□□□□ -0.29
PTCD1-201ENST00000292478 VGLL2Q8N8G2 317 aa13.25□□□□□ -0.29
PTCD1-201ENST00000292478 VPS37AQ8NEZ2 397 aa13.25□□□□□ -0.29
PTCD1-201ENST00000292478 DTX3LQ8TDB6 740 aa13.25□□□□□ -0.29
PTCD1-201ENST00000292478 DUSP9Q99956 384 aaKnown RBP13.25□□□□□ -0.29
PTCD1-201ENST00000292478 BRD8Q9H0E9 1235 aa13.25□□□□□ -0.29
PTCD1-201ENST00000292478 ASB7Q9H672 318 aa13.25□□□□□ -0.29
PTCD1-201ENST00000292478 PRDM16Q9HAZ2 1276 aa13.25□□□□□ -0.29
PTCD1-201ENST00000292478 TSR3Q9UJK0 312 aaKnown RBP13.25□□□□□ -0.29
PTCD1-201ENST00000292478 FAM32AQ9Y421 112 aaKnown RBP13.25□□□□□ -0.29
PTCD1-201ENST00000292478 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.25□□□□□ -0.29
PTCD1-201ENST00000292478 H0Y626 953 aa13.25□□□□□ -0.29
PTCD1-201ENST00000292478 CXCL11O14625 94 aa13.25□□□□□ -0.29
PTCD1-201ENST00000292478 KDM1AO60341 852 aa13.25□□□□□ -0.29
PTCD1-201ENST00000292478 TRIM16O95361 564 aa13.25□□□□□ -0.29
PTCD1-201ENST00000292478 DNAJC3Q13217 504 aa13.25□□□□□ -0.29
PTCD1-201ENST00000292478 ZNF177Q13360 481 aaPredicted RBP13.25□□□□□ -0.29
PTCD1-201ENST00000292478 ILDR1Q86SU0 546 aaPredicted RBP13.25□□□□□ -0.29
PTCD1-201ENST00000292478 EIF1ADQ8N9N8 165 aaKnown RBP13.25□□□□□ -0.29
PTCD1-201ENST00000292478 MDM1Q8TC05 714 aa13.25□□□□□ -0.29
PTCD1-201ENST00000292478 ATG4AQ8WYN0 398 aa13.25□□□□□ -0.29
PTCD1-201ENST00000292478 PPP1R36Q96LQ0 422 aa13.25□□□□□ -0.29
PTCD1-201ENST00000292478 FAM111AQ96PZ2 611 aa13.25□□□□□ -0.29
PTCD1-201ENST00000292478 AP4E1Q9UPM8 1137 aa13.25□□□□□ -0.29
PTCD1-201ENST00000292478 STX7O15400 261 aaKnown RBP13.25□□□□□ -0.29
PTCD1-201ENST00000292478 THRAP10827 490 aa13.25□□□□□ -0.29
PTCD1-201ENST00000292478 TWF1Q12792 350 aa13.25□□□□□ -0.29
PTCD1-201ENST00000292478 ARID3BQ8IVW6 561 aaPredicted RBP13.25□□□□□ -0.29
PTCD1-201ENST00000292478 SLC20A1Q8WUM9 679 aa13.25□□□□□ -0.29
PTCD1-201ENST00000292478 PRPF18Q99633 342 aaKnown RBP13.25□□□□□ -0.29
PTCD1-201ENST00000292478 OSGEPQ9NPF4 335 aa13.25□□□□□ -0.29
PTCD1-201ENST00000292478 AAASQ9NRG9 546 aa13.25□□□□□ -0.29
PTCD1-201ENST00000292478 ZMYM2Q9UBW7 1377 aa13.25□□□□□ -0.29
PTCD1-201ENST00000292478 AP5Z1O43299 807 aa13.24□□□□□ -0.29
PTCD1-201ENST00000292478 ASMTLO95671 621 aa13.24□□□□□ -0.29
PTCD1-201ENST00000292478 GRK2P25098 689 aa13.24□□□□□ -0.29
PTCD1-201ENST00000292478 VHLP40337 213 aa13.24□□□□□ -0.29
PTCD1-201ENST00000292478 KPNA1P52294 538 aaPredicted RBP13.24□□□□□ -0.29
PTCD1-201ENST00000292478 MYL6P60660 151 aa13.24□□□□□ -0.29
PTCD1-201ENST00000292478 DENND5BQ6ZUT9 1274 aa13.24□□□□□ -0.29
PTCD1-201ENST00000292478 FAM9CQ8IZT9 166 aa13.24□□□□□ -0.29
PTCD1-201ENST00000292478 AK9Q5TCS8 1911 aa13.24□□□□□ -0.29
PTCD1-201ENST00000292478 PIK3CDO00329 1044 aa13.24□□□□□ -0.29
PTCD1-201ENST00000292478 ACADSP16219 412 aa13.24□□□□□ -0.29
PTCD1-201ENST00000292478 RPL10AP62906 217 aaKnown RBP13.24□□□□□ -0.29
PTCD1-201ENST00000292478 ACAP1Q15027 740 aa13.24□□□□□ -0.29
PTCD1-201ENST00000292478 ARHGAP15Q53QZ3 475 aa13.24□□□□□ -0.29
PTCD1-201ENST00000292478 SNX31Q8N9S9 440 aa13.24□□□□□ -0.29
PTCD1-201ENST00000292478 BARX2Q9UMQ3 279 aaPredicted RBP13.24□□□□□ -0.29
PTCD1-201ENST00000292478 PAEPP09466 180 aa13.24□□□□□ -0.29
PTCD1-201ENST00000292478 HOXA10P31260 410 aaPredicted RBP13.24□□□□□ -0.29
PTCD1-201ENST00000292478 ETFBP38117 255 aa13.24□□□□□ -0.29
PTCD1-201ENST00000292478 PSMC6P62333 389 aa13.24□□□□□ -0.29
PTCD1-201ENST00000292478 MRPS35P82673 323 aaKnown RBP13.24□□□□□ -0.29
PTCD1-201ENST00000292478 SEZ6Q53EL9 994 aa13.24□□□□□ -0.29
PTCD1-201ENST00000292478 ZRANB3Q5FWF4 1079 aa13.24□□□□□ -0.29
PTCD1-201ENST00000292478 PKN3Q6P5Z2 889 aa13.24□□□□□ -0.29
PTCD1-201ENST00000292478 MKL1Q969V6 931 aa13.24□□□□□ -0.29
PTCD1-201ENST00000292478 MTMR9Q96QG7 549 aa13.24□□□□□ -0.29
PTCD1-201ENST00000292478 ANKZF1Q9H8Y5 726 aa13.24□□□□□ -0.29
PTCD1-201ENST00000292478 SPDYE5A6NIY4 337 aa13.24□□□□□ -0.29
PTCD1-201ENST00000292478 F5H5T6 163 aa13.24□□□□□ -0.29
PTCD1-201ENST00000292478 ADCY3O60266 1144 aa13.24□□□□□ -0.29
PTCD1-201ENST00000292478 CELF2O95319 508 aaKnown RBP13.24□□□□□ -0.29
PTCD1-201ENST00000292478 ACO1P21399 889 aaKnown RBP13.24□□□□□ -0.29
PTCD1-201ENST00000292478 AXLP30530 894 aa13.24□□□□□ -0.29
PTCD1-201ENST00000292478 VCPP55072 806 aaKnown RBP13.24□□□□□ -0.29
PTCD1-201ENST00000292478 SPDYE7PQ495Y7 208 aa13.24□□□□□ -0.29
PTCD1-201ENST00000292478 FBXO25Q8TCJ0 367 aa13.24□□□□□ -0.29
PTCD1-201ENST00000292478 PAFAH2Q99487 392 aa13.24□□□□□ -0.29
PTCD1-201ENST00000292478 SPATA16Q9BXB7 569 aa13.24□□□□□ -0.29
PTCD1-201ENST00000292478 TRMT6Q9UJA5 497 aaKnown RBP13.24□□□□□ -0.29
PTCD1-201ENST00000292478 CHRM3P20309 590 aa13.23□□□□□ -0.29
PTCD1-201ENST00000292478 POU4F1Q01851 419 aa13.23□□□□□ -0.29
PTCD1-201ENST00000292478 EARS2Q5JPH6 523 aaKnown RBP13.23□□□□□ -0.29
PTCD1-201ENST00000292478 SLC35C1Q96A29 364 aa13.23□□□□□ -0.29
PTCD1-201ENST00000292478 ACSF2Q96CM8 615 aaPredicted RBP13.23□□□□□ -0.29
PTCD1-201ENST00000292478 DACH2Q96NX9 599 aa13.23□□□□□ -0.29
PTCD1-201ENST00000292478 SPATC1LQ9H0A9 340 aa13.23□□□□□ -0.29
PTCD1-201ENST00000292478 PCDHA3Q9Y5H8 950 aa13.23□□□□□ -0.29
PTCD1-201ENST00000292478 CCDC78A2IDD5 438 aa13.23□□□□□ -0.29
PTCD1-201ENST00000292478 VWA5AO00534 786 aa13.23□□□□□ -0.29
PTCD1-201ENST00000292478 KCNA4P22459 653 aa13.23□□□□□ -0.29
PTCD1-201ENST00000292478 SLC12A3P55017 1021 aa13.23□□□□□ -0.29
PTCD1-201ENST00000292478 TRIP10Q15642 601 aa13.23□□□□□ -0.29
PTCD1-201ENST00000292478 WLSQ5T9L3 541 aa13.23□□□□□ -0.29
PTCD1-201ENST00000292478 POP1Q99575 1024 aaKnown RBP13.23□□□□□ -0.29
PTCD1-201ENST00000292478 DCLK3Q9C098 648 aa13.23□□□□□ -0.29
PTCD1-201ENST00000292478 ZNF556Q9HAH1 456 aa13.23□□□□□ -0.29
PTCD1-201ENST00000292478 BLOC1S4Q9NUP1 217 aa13.23□□□□□ -0.29
PTCD1-201ENST00000292478 HEATR9A2RTY3 570 aa13.23□□□□□ -0.29
PTCD1-201ENST00000292478 THP07101 528 aa13.23□□□□□ -0.29
PTCD1-201ENST00000292478 CXCL9Q07325 125 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms