RNA–Protein interactions for RNA: ENST00000254630.11

PTCD3-201, Transcript of pentatricopeptide repeat domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD3, Length 6,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-201ENST00000254630 AGGF1Q8N302 714 aaeCLIP9.02□□□□□ -0.97
PTCD3-201ENST00000254630 IRX2Q9BZI1 471 aaPredicted RBP9.02□□□□□ -0.97
PTCD3-201ENST00000254630 SPATC1LQ9H0A9 340 aa9.02□□□□□ -0.97
PTCD3-201ENST00000254630 CAPN10Q9HC96 672 aa9.02□□□□□ -0.97
PTCD3-201ENST00000254630 HPS4Q9NQG7 708 aa9.02□□□□□ -0.97
PTCD3-201ENST00000254630 GPATCH2LQ9NWQ4 482 aa9.02□□□□□ -0.97
PTCD3-201ENST00000254630 DYRK1BQ9Y463 629 aa9.02□□□□□ -0.97
PTCD3-201ENST00000254630 SLC12A8A0AV02 714 aa9.02□□□□□ -0.97
PTCD3-201ENST00000254630 CD44P16070 742 aaKnown RBP9.02□□□□□ -0.97
PTCD3-201ENST00000254630 SOX11P35716 441 aa9.02□□□□□ -0.97
PTCD3-201ENST00000254630 ALDH5A1P51649 535 aaPredicted RBP9.02□□□□□ -0.97
PTCD3-201ENST00000254630 ATXN3P54252 364 aaPredicted RBP9.02□□□□□ -0.97
PTCD3-201ENST00000254630 ATN1P54259 1190 aaPredicted RBP9.02□□□□□ -0.97
PTCD3-201ENST00000254630 CCDC85BQ15834 202 aaPredicted RBP9.02□□□□□ -0.97
PTCD3-201ENST00000254630 PTGISQ16647 500 aa9.02□□□□□ -0.97
PTCD3-201ENST00000254630 PHKG1Q16816 387 aa9.02□□□□□ -0.97
PTCD3-201ENST00000254630 LRRC23Q53EV4 343 aaPredicted RBP9.02□□□□□ -0.97
PTCD3-201ENST00000254630 FAXCQ5TGI0 409 aa9.02□□□□□ -0.97
PTCD3-201ENST00000254630 CACHD1Q5VU97 1274 aa9.02□□□□□ -0.97
PTCD3-201ENST00000254630 ANKS6Q68DC2 871 aa9.02□□□□□ -0.97
PTCD3-201ENST00000254630 MMGT1Q8N4V1 131 aa9.02□□□□□ -0.97
PTCD3-201ENST00000254630 SH2D3CQ8N5H7 860 aa9.02□□□□□ -0.97
PTCD3-201ENST00000254630 AKT1S1Q96B36 256 aa9.02□□□□□ -0.97
PTCD3-201ENST00000254630 PRPF18Q99633 342 aaKnown RBP9.02□□□□□ -0.97
PTCD3-201ENST00000254630 RBBP8Q99708 897 aa9.02□□□□□ -0.97
PTCD3-201ENST00000254630 FRMD8Q9BZ67 464 aaPredicted RBP9.02□□□□□ -0.97
PTCD3-201ENST00000254630 BRD8Q9H0E9 1235 aa9.02□□□□□ -0.97
PTCD3-201ENST00000254630 B3GAT3O94766 335 aa9.02□□□□□ -0.97
PTCD3-201ENST00000254630 LSM8O95777 96 aaKnown RBP9.02□□□□□ -0.97
PTCD3-201ENST00000254630 MAPTP10636 758 aaKnown RBP9.02□□□□□ -0.97
PTCD3-201ENST00000254630 ACO1P21399 889 aaKnown RBP9.02□□□□□ -0.97
PTCD3-201ENST00000254630 FGFR2P21802 821 aa9.02□□□□□ -0.97
PTCD3-201ENST00000254630 SERPINB10P48595 397 aa9.02□□□□□ -0.97
PTCD3-201ENST00000254630 CYTH1Q15438 398 aa9.02□□□□□ -0.97
PTCD3-201ENST00000254630 DAB2IPQ5VWQ8 1189 aa9.02□□□□□ -0.97
PTCD3-201ENST00000254630 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.02□□□□□ -0.97
PTCD3-201ENST00000254630 SLC13A5Q86YT5 568 aaPredicted RBP9.02□□□□□ -0.97
PTCD3-201ENST00000254630 MYO1HQ8N1T3 1032 aa9.02□□□□□ -0.97
PTCD3-201ENST00000254630 TMC2Q8TDI7 906 aa9.02□□□□□ -0.97
PTCD3-201ENST00000254630 CASKIN2Q8WXE0 1202 aa9.02□□□□□ -0.97
PTCD3-201ENST00000254630 VPS50Q96JG6 964 aa9.02□□□□□ -0.97
PTCD3-201ENST00000254630 TSEN34Q9BSV6 310 aaKnown RBP9.02□□□□□ -0.97
PTCD3-201ENST00000254630 ZNF518BQ9C0D4 1074 aa9.02□□□□□ -0.97
PTCD3-201ENST00000254630 KCTD10Q9H3F6 313 aa9.02□□□□□ -0.97
PTCD3-201ENST00000254630 SYTL2Q9HCH5 934 aa9.02□□□□□ -0.97
PTCD3-201ENST00000254630 C6orf203Q9P0P8 240 aaPredicted RBP9.02□□□□□ -0.97
PTCD3-201ENST00000254630 USP18Q9UMW8 372 aa9.02□□□□□ -0.97
PTCD3-201ENST00000254630 A0A087WZ62 844 aa9.02□□□□□ -0.97
PTCD3-201ENST00000254630 TMEM120BA0PK00 339 aa9.02□□□□□ -0.97
PTCD3-201ENST00000254630 HNRNPRO43390 633 aaKnown RBP9.02□□□□□ -0.97
PTCD3-201ENST00000254630 CNTN1Q12860 1018 aa9.02□□□□□ -0.97
PTCD3-201ENST00000254630 MRNIPQ6NTE8 343 aa9.02□□□□□ -0.97
PTCD3-201ENST00000254630 C11orf74Q86VG3 221 aa9.02□□□□□ -0.97
PTCD3-201ENST00000254630 SLC47A2Q86VL8 602 aa9.02□□□□□ -0.97
PTCD3-201ENST00000254630 SEC16BQ96JE7 1060 aa9.02□□□□□ -0.97
PTCD3-201ENST00000254630 KCNK16Q96T55 309 aa9.02□□□□□ -0.97
PTCD3-201ENST00000254630 DNAJC7Q99615 494 aa9.02□□□□□ -0.97
PTCD3-201ENST00000254630 FDXACB1Q9BRP7 624 aaPredicted RBP9.02□□□□□ -0.97
PTCD3-201ENST00000254630 UBXN6Q9BZV1 441 aa9.02□□□□□ -0.97
PTCD3-201ENST00000254630 SEMA6BQ9H3T3 888 aa9.02□□□□□ -0.97
PTCD3-201ENST00000254630 DDX43Q9NXZ2 648 aaKnown RBP9.02□□□□□ -0.97
PTCD3-201ENST00000254630 COL5A2P05997 1499 aaPredicted RBP9.01□□□□□ -0.97
PTCD3-201ENST00000254630 TCRBV5S4A2TA0A5A2 114 aa9.01□□□□□ -0.97
PTCD3-201ENST00000254630 LRRIQ3A6PVS8 624 aaPredicted RBP9.01□□□□□ -0.97
PTCD3-201ENST00000254630 GLRA3O75311 464 aa9.01□□□□□ -0.97
PTCD3-201ENST00000254630 MICAL2O94851 1124 aa9.01□□□□□ -0.97
PTCD3-201ENST00000254630 PLEKP08567 350 aaPredicted RBP9.01□□□□□ -0.97
PTCD3-201ENST00000254630 ALOX15P16050 662 aaPredicted RBP9.01□□□□□ -0.97
PTCD3-201ENST00000254630 CAPZA2P47755 286 aa9.01□□□□□ -0.97
PTCD3-201ENST00000254630 BLVRAP53004 296 aa9.01□□□□□ -0.97
PTCD3-201ENST00000254630 ACTN3Q08043 901 aaPredicted RBP9.01□□□□□ -0.97
PTCD3-201ENST00000254630 PGS1Q32NB8 556 aa9.01□□□□□ -0.97
PTCD3-201ENST00000254630 AASDHQ4L235 1098 aaPredicted RBP9.01□□□□□ -0.97
PTCD3-201ENST00000254630 DDI1Q8WTU0 396 aa9.01□□□□□ -0.97
PTCD3-201ENST00000254630 DNAJB3Q8WWF6 145 aa9.01□□□□□ -0.97
PTCD3-201ENST00000254630 SOCS4Q8WXH5 440 aa9.01□□□□□ -0.97
PTCD3-201ENST00000254630 PLEKHA8Q96JA3 519 aa9.01□□□□□ -0.97
PTCD3-201ENST00000254630 KLF6Q99612 283 aaPredicted RBP9.01□□□□□ -0.97
PTCD3-201ENST00000254630 SETD4Q9NVD3 440 aa9.01□□□□□ -0.97
PTCD3-201ENST00000254630 NMRK1Q9NWW6 199 aa9.01□□□□□ -0.97
PTCD3-201ENST00000254630 TFR2Q9UP52 801 aa9.01□□□□□ -0.97
PTCD3-201ENST00000254630 PHF20L1A8MW92 1017 aa9.01□□□□□ -0.97
PTCD3-201ENST00000254630 EIF3HO15372 352 aaKnown RBP eCLIP9.01□□□□□ -0.97
PTCD3-201ENST00000254630 SYNCRIPO60506 623 aaKnown RBP9.01□□□□□ -0.97
PTCD3-201ENST00000254630 CRTAMO95727 393 aa9.01□□□□□ -0.97
PTCD3-201ENST00000254630 MAPK1P28482 360 aa9.01□□□□□ -0.97
PTCD3-201ENST00000254630 SPOCD1Q6ZMY3 1216 aa9.01□□□□□ -0.97
PTCD3-201ENST00000254630 MIB1Q86YT6 1006 aa9.01□□□□□ -0.97
PTCD3-201ENST00000254630 SYTL5Q8TDW5 730 aaPredicted RBP9.01□□□□□ -0.97
PTCD3-201ENST00000254630 SERPINB12Q96P63 405 aa9.01□□□□□ -0.97
PTCD3-201ENST00000254630 ZIM3Q96PE6 472 aa9.01□□□□□ -0.97
PTCD3-201ENST00000254630 KLC4Q9NSK0 619 aa9.01□□□□□ -0.97
PTCD3-201ENST00000254630 TBC1D13Q9NVG8 400 aa9.01□□□□□ -0.97
PTCD3-201ENST00000254630 KANSL3Q9P2N6 904 aa9.01□□□□□ -0.97
PTCD3-201ENST00000254630 GTF3C4Q9UKN8 822 aa9.01□□□□□ -0.97
PTCD3-201ENST00000254630 AP4E1Q9UPM8 1137 aa9.01□□□□□ -0.97
PTCD3-201ENST00000254630 SPACA6W5XKT8 324 aa9.01□□□□□ -0.97
PTCD3-201ENST00000254630 VPS26AO75436 327 aa9.01□□□□□ -0.97
PTCD3-201ENST00000254630 KRT8P05787 483 aa9.01□□□□□ -0.97
PTCD3-201ENST00000254630 CXCL8P10145 99 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms