RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 ZNF143P52747 638 aaPredicted RBP17.16■□□□□ 0.34
HOXD3-201ENST00000249440 FAM102AQ5T9C2 384 aaPredicted RBP17.16■□□□□ 0.34
HOXD3-201ENST00000249440 GADL1Q6ZQY3 521 aa17.16■□□□□ 0.34
HOXD3-201ENST00000249440 ZNF398Q8TD17 642 aa17.16■□□□□ 0.34
HOXD3-201ENST00000249440 TCP10LQ8TDR4 215 aa17.16■□□□□ 0.34
HOXD3-201ENST00000249440 DCAKDQ8WVC6 231 aa17.16■□□□□ 0.34
HOXD3-201ENST00000249440 INPP5DQ92835 1189 aa17.16■□□□□ 0.34
HOXD3-201ENST00000249440 NFKBIZQ9BYH8 718 aa17.16■□□□□ 0.34
HOXD3-201ENST00000249440 CXorf56Q9H5V9 222 aa17.16■□□□□ 0.34
HOXD3-201ENST00000249440 MINDY3Q9H8M7 445 aa17.16■□□□□ 0.34
HOXD3-201ENST00000249440 HMGXB4Q9UGU5 601 aa17.16■□□□□ 0.34
HOXD3-201ENST00000249440 A8MUI8 341 aa17.15■□□□□ 0.34
HOXD3-201ENST00000249440 STAG3L1P0CL83 205 aa17.15■□□□□ 0.34
HOXD3-201ENST00000249440 ADRA1DP25100 572 aa17.15■□□□□ 0.34
HOXD3-201ENST00000249440 CLCN3P51790 818 aa17.15■□□□□ 0.34
HOXD3-201ENST00000249440 ROR1Q01973 937 aa17.15■□□□□ 0.34
HOXD3-201ENST00000249440 TNFAIP2Q03169 654 aa17.15■□□□□ 0.34
HOXD3-201ENST00000249440 JADE1Q6IE81 842 aa17.15■□□□□ 0.34
HOXD3-201ENST00000249440 DARS2Q6PI48 645 aaKnown RBP17.15■□□□□ 0.34
HOXD3-201ENST00000249440 AGGF1Q8N302 714 aaeCLIP17.15■□□□□ 0.34
HOXD3-201ENST00000249440 BANPQ8N9N5 519 aa17.15■□□□□ 0.34
HOXD3-201ENST00000249440 N4BP2L2Q92802 583 aaPredicted RBP17.15■□□□□ 0.34
HOXD3-201ENST00000249440 VPS11Q9H270 941 aa17.15■□□□□ 0.34
HOXD3-201ENST00000249440 VRTNQ9H8Y1 702 aa17.15■□□□□ 0.34
HOXD3-201ENST00000249440 CYLDQ9NQC7 956 aa17.15■□□□□ 0.34
HOXD3-201ENST00000249440 CSADQ9Y600 493 aa17.15■□□□□ 0.34
HOXD3-201ENST00000249440 IKBKGQ9Y6K9 419 aa17.15■□□□□ 0.34
HOXD3-201ENST00000249440 IQANK1A0A1B0GTG1 560 aa17.15■□□□□ 0.34
HOXD3-201ENST00000249440 GPR25O00155 361 aa17.15■□□□□ 0.34
HOXD3-201ENST00000249440 SLC25A27O95847 323 aa17.15■□□□□ 0.34
HOXD3-201ENST00000249440 PGK2P07205 417 aa17.15■□□□□ 0.34
HOXD3-201ENST00000249440 TARSP26639 723 aaKnown RBP17.15■□□□□ 0.34
HOXD3-201ENST00000249440 TFDP2Q14188 446 aa17.15■□□□□ 0.34
HOXD3-201ENST00000249440 ACCSLQ4AC99 568 aa17.15■□□□□ 0.34
HOXD3-201ENST00000249440 FAM47CQ5HY64 1035 aa17.15■□□□□ 0.34
HOXD3-201ENST00000249440 RSRC1Q96IZ7 334 aaKnown RBP17.15■□□□□ 0.34
HOXD3-201ENST00000249440 HEXIM2Q96MH2 286 aaKnown RBP17.15■□□□□ 0.34
HOXD3-201ENST00000249440 ASB7Q9H672 318 aa17.15■□□□□ 0.34
HOXD3-201ENST00000249440 CHMP2BQ9UQN3 213 aa17.15■□□□□ 0.34
HOXD3-201ENST00000249440 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP17.14■□□□□ 0.33
HOXD3-201ENST00000249440 C2CD2LO14523 706 aa17.14■□□□□ 0.33
HOXD3-201ENST00000249440 PIAS1O75925 651 aa17.14■□□□□ 0.33
HOXD3-201ENST00000249440 ENDOD1O94919 500 aa17.14■□□□□ 0.33
HOXD3-201ENST00000249440 IQCF3P0C7M6 154 aa17.14■□□□□ 0.33
HOXD3-201ENST00000249440 TROVE2P10155 538 aaKnown RBP eCLIP17.14■□□□□ 0.33
HOXD3-201ENST00000249440 FGFR1P11362 822 aa17.14■□□□□ 0.33
HOXD3-201ENST00000249440 GPD1P21695 349 aa17.14■□□□□ 0.33
HOXD3-201ENST00000249440 CDH6P55285 790 aa17.14■□□□□ 0.33
HOXD3-201ENST00000249440 MTM1Q13496 603 aa17.14■□□□□ 0.33
HOXD3-201ENST00000249440 NOMO1Q15155 1222 aa17.14■□□□□ 0.33
HOXD3-201ENST00000249440 SLC45A4Q5BKX6 768 aa17.14■□□□□ 0.33
HOXD3-201ENST00000249440 TLDC1Q6P9B6 456 aa17.14■□□□□ 0.33
HOXD3-201ENST00000249440 CNKSR2Q8WXI2 1034 aa17.14■□□□□ 0.33
HOXD3-201ENST00000249440 TMEM237Q96Q45 408 aa17.14■□□□□ 0.33
HOXD3-201ENST00000249440 CNPY3Q9BT09 278 aa17.14■□□□□ 0.33
HOXD3-201ENST00000249440 MIS12Q9H081 205 aa17.14■□□□□ 0.33
HOXD3-201ENST00000249440 STAU2Q9NUL3 570 aaKnown RBP eCLIP17.14■□□□□ 0.33
HOXD3-201ENST00000249440 HAO1Q9UJM8 370 aa17.14■□□□□ 0.33
HOXD3-201ENST00000249440 C15orf41Q9Y2V0 281 aa17.14■□□□□ 0.33
HOXD3-201ENST00000249440 SPAG6O75602 509 aa17.14■□□□□ 0.33
HOXD3-201ENST00000249440 WFS1O76024 890 aa17.14■□□□□ 0.33
HOXD3-201ENST00000249440 MT-ND3P03897 115 aa17.14■□□□□ 0.33
HOXD3-201ENST00000249440 MCF2P10911 925 aa17.14■□□□□ 0.33
HOXD3-201ENST00000249440 ELK3P41970 407 aa17.14■□□□□ 0.33
HOXD3-201ENST00000249440 PHKA2P46019 1235 aa17.14■□□□□ 0.33
HOXD3-201ENST00000249440 ZC3H18Q86VM9 953 aaKnown RBP17.14■□□□□ 0.33
HOXD3-201ENST00000249440 MANSC1Q9H8J5 431 aa17.14■□□□□ 0.33
HOXD3-201ENST00000249440 WDR91A4D1P6 747 aa17.13■□□□□ 0.33
HOXD3-201ENST00000249440 GOLGA8RI6L899 631 aa17.13■□□□□ 0.33
HOXD3-201ENST00000249440 DPH6Q7L8W6 267 aa17.13■□□□□ 0.33
HOXD3-201ENST00000249440 NLRP9Q7RTR0 991 aa17.13■□□□□ 0.33
HOXD3-201ENST00000249440 MAP7D3Q8IWC1 876 aa17.13■□□□□ 0.33
HOXD3-201ENST00000249440 CXorf38Q8TB03 319 aa17.13■□□□□ 0.33
HOXD3-201ENST00000249440 UBA3Q8TBC4 463 aa17.13■□□□□ 0.33
HOXD3-201ENST00000249440 TRAF3IP1Q8TDR0 691 aaPredicted RBP17.13■□□□□ 0.33
HOXD3-201ENST00000249440 NSMCE1Q8WV22 266 aa17.13■□□□□ 0.33
HOXD3-201ENST00000249440 HPDLQ96IR7 371 aa17.13■□□□□ 0.33
HOXD3-201ENST00000249440 PEBP4Q96S96 227 aa17.13■□□□□ 0.33
HOXD3-201ENST00000249440 IFT122Q9HBG6 1241 aa17.13■□□□□ 0.33
HOXD3-201ENST00000249440 NPHS2Q9NP85 383 aa17.13■□□□□ 0.33
HOXD3-201ENST00000249440 MCM3APO60318 1980 aa17.13■□□□□ 0.33
HOXD3-201ENST00000249440 ADM5C9JUS6 153 aa17.13■□□□□ 0.33
HOXD3-201ENST00000249440 CHADO15335 359 aa17.13■□□□□ 0.33
HOXD3-201ENST00000249440 PRPSAP2O60256 369 aa17.13■□□□□ 0.33
HOXD3-201ENST00000249440 RPSAP08865 295 aaKnown RBP17.13■□□□□ 0.33
HOXD3-201ENST00000249440 PDGFRAP16234 1089 aa17.13■□□□□ 0.33
HOXD3-201ENST00000249440 ZNF200P98182 395 aaPredicted RBP17.13■□□□□ 0.33
HOXD3-201ENST00000249440 POU5F1BQ06416 359 aa17.13■□□□□ 0.33
HOXD3-201ENST00000249440 MMRN1Q13201 1228 aa17.13■□□□□ 0.33
HOXD3-201ENST00000249440 PTK7Q13308 1070 aa17.13■□□□□ 0.33
HOXD3-201ENST00000249440 FAM187BQ17R55 369 aa17.13■□□□□ 0.33
HOXD3-201ENST00000249440 CCDC62Q6P9F0 684 aa17.13■□□□□ 0.33
HOXD3-201ENST00000249440 NPNTQ6UXI9 565 aa17.13■□□□□ 0.33
HOXD3-201ENST00000249440 ZNF276Q8N554 614 aa17.13■□□□□ 0.33
HOXD3-201ENST00000249440 RXFP2Q8WXD0 754 aa17.13■□□□□ 0.33
HOXD3-201ENST00000249440 UTP4Q969X6 686 aaKnown RBP17.13■□□□□ 0.33
HOXD3-201ENST00000249440 FGD4Q96M96 766 aa17.13■□□□□ 0.33
HOXD3-201ENST00000249440 ZFP69BQ9UJL9 534 aa17.13■□□□□ 0.33
HOXD3-201ENST00000249440 BARX2Q9UMQ3 279 aaPredicted RBP17.13■□□□□ 0.33
HOXD3-201ENST00000249440 TEX264Q9Y6I9 313 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms