RNA–Protein interactions for RNA: YNL197C

WHI3, Transcript of RNA binding protein that sequesters CLN3 mRNA in cytoplasmic foci, yeast

Gene WHI3, Length 1,986 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
WHI3	YNL197C	RGI1	P40043	161 aa	Predicted RBP	1.03	□□□□□ -2.24
WHI3	YNL197C	TSC11	P40061	1430 aa		1.03	□□□□□ -2.24
WHI3	YNL197C	YRF1-6	P53819	1859 aa		1.03	□□□□□ -2.24
WHI3	YNL197C	YHR138C	P38841	114 aa	Predicted RBP	1.03	□□□□□ -2.25
WHI3	YNL197C	KRE5	P22023	1365 aa		1.02	□□□□□ -2.25
WHI3	YNL197C	YCR101C	P25607	182 aa		1.02	□□□□□ -2.25
WHI3	YNL197C	SWC7	Q06707	132 aa		1.02	□□□□□ -2.25
WHI3	YNL197C	BNI1	P41832	1953 aa		1.02	□□□□□ -2.25
WHI3	YNL197C	YLR419W	Q06698	1435 aa	Known RBP	1.02	□□□□□ -2.25
WHI3	YNL197C	YOL118C	Q08259	102 aa		1.01	□□□□□ -2.25
WHI3	YNL197C	YOS1	Q3E834	85 aa		1.01	□□□□□ -2.25
WHI3	YNL197C	MDN1	Q12019	4910 aa	Known RBP	1.01	□□□□□ -2.25
WHI3	YNL197C	UBC4	P15731	148 aa		1.01	□□□□□ -2.25
WHI3	YNL197C	IMP2	P46972	177 aa		1.01	□□□□□ -2.25
WHI3	YNL197C	YCL048W-A	Q2V2Q2	79 aa		1	□□□□□ -2.25
WHI3	YNL197C	UBC5	P15732	148 aa		0.99	□□□□□ -2.25
WHI3	YNL197C	YMR090W	Q04304	227 aa	Known RBP	0.99	□□□□□ -2.25
WHI3	YNL197C	BLM10	P43583	2143 aa		0.99	□□□□□ -2.25
WHI3	YNL197C	YBR090C	P38253	122 aa		0.99	□□□□□ -2.25
WHI3	YNL197C	SNF2	P22082	1703 aa		0.98	□□□□□ -2.25
WHI3	YNL197C	SRB6	P32570	121 aa		0.98	□□□□□ -2.25
WHI3	YNL197C	FYV7	Q12247	151 aa		0.98	□□□□□ -2.25
WHI3	YNL197C	POL2	P21951	2222 aa	Known RBP	0.98	□□□□□ -2.25
WHI3	YNL197C	GEA1	P47102	1408 aa	Predicted RBP	0.98	□□□□□ -2.25
WHI3	YNL197C	PAU5	P43575	122 aa		0.97	□□□□□ -2.25
WHI3	YNL197C	BUD4	P47136	1447 aa		0.97	□□□□□ -2.25
WHI3	YNL197C	GCV3	P39726	170 aa	Predicted RBP	0.97	□□□□□ -2.25
WHI3	YNL197C	RSM19	P53733	91 aa	Predicted RBP	0.97	□□□□□ -2.25
WHI3	YNL197C	YDR210W	Q03482	75 aa		0.97	□□□□□ -2.25
WHI3	YNL197C	PDR11	P40550	1411 aa		0.96	□□□□□ -2.26
WHI3	YNL197C	TY4B-H	P0C2J7	1802 aa		0.96	□□□□□ -2.26
WHI3	YNL197C	CCW14	O13547	238 aa		0.96	□□□□□ -2.26
WHI3	YNL197C	SHU1	P38751	150 aa		0.96	□□□□□ -2.26
WHI3	YNL197C	YPL038W-A	Q3E7B4	63 aa		0.96	□□□□□ -2.26
WHI3	YNL197C	TY3B-I	Q7LHG5	1498 aa	Known RBP	0.95	□□□□□ -2.26
WHI3	YNL197C	SIN3	P22579	1536 aa		0.95	□□□□□ -2.26
WHI3	YNL197C	YCR095W-A	Q3E787	52 aa		0.95	□□□□□ -2.26
WHI3	YNL197C	GEA2	P39993	1459 aa	Known RBP	0.95	□□□□□ -2.26
WHI3	YNL197C	YHR173C	P38864	112 aa		0.94	□□□□□ -2.26
WHI3	YNL197C	YIL086C	P40503	102 aa		0.94	□□□□□ -2.26
WHI3	YNL197C	TOP2	P06786	1428 aa	Known RBP	0.94	□□□□□ -2.26
WHI3	YNL197C	FMP27	Q06179	2628 aa		0.94	□□□□□ -2.26
WHI3	YNL197C	REV3	P14284	1504 aa		0.93	□□□□□ -2.26
WHI3	YNL197C	KSH1	Q8TGJ3	72 aa		0.93	□□□□□ -2.26
WHI3	YNL197C	MYO1	P08964	1928 aa		0.92	□□□□□ -2.26
WHI3	YNL197C	BPT1	P14772	1559 aa		0.92	□□□□□ -2.26
WHI3	YNL197C	PAU6	P0CE90	120 aa		0.92	□□□□□ -2.26
WHI3	YNL197C	PAU18	P0CE91	120 aa		0.92	□□□□□ -2.26
WHI3	YNL197C	MIX14	Q04341	121 aa		0.92	□□□□□ -2.26
WHI3	YNL197C	YPL225W	Q08971	146 aa	Known RBP	0.92	□□□□□ -2.26
WHI3	YNL197C	ROX3	P25046	220 aa		0.91	□□□□□ -2.26
WHI3	YNL197C	CAT8	P39113	1433 aa		0.91	□□□□□ -2.26
WHI3	YNL197C	SNA2	P56508	79 aa		0.9	□□□□□ -2.26
WHI3	YNL197C	ZEO1	Q08245	113 aa		0.9	□□□□□ -2.26
WHI3	YNL197C	GCN1	P33892	2672 aa	Known RBP	0.9	□□□□□ -2.27
WHI3	YNL197C	YOR289W	Q12012	251 aa	Predicted RBP	0.9	□□□□□ -2.27
WHI3	YNL197C	YDR010C	Q12426	110 aa		0.9	□□□□□ -2.27
WHI3	YNL197C	YBR072C-A	Q3E794	53 aa		0.9	□□□□□ -2.27
WHI3	YNL197C	YOL164W-A	Q3E7A5	60 aa		0.9	□□□□□ -2.27
WHI3	YNL197C	MPC2	P38857	129 aa		0.89	□□□□□ -2.27
WHI3	YNL197C	RRT15	Q3E811	62 aa		0.89	□□□□□ -2.27
WHI3	YNL197C	UTP20	P35194	2493 aa	Known RBP	0.89	□□□□□ -2.27
WHI3	YNL197C	MRX7	P53869	86 aa		0.88	□□□□□ -2.27
WHI3	YNL197C	YHL005C	P38752	130 aa		0.88	□□□□□ -2.27
WHI3	YNL197C	YNR034W-A	Q3E841	98 aa		0.88	□□□□□ -2.27
WHI3	YNL197C	COX12	Q01519	83 aa		0.87	□□□□□ -2.27
WHI3	YNL197C	RPA12	P32529	125 aa	Known RBP	0.87	□□□□□ -2.27
WHI3	YNL197C	YBL071C	P38185	102 aa		0.87	□□□□□ -2.27
WHI3	YNL197C	SRB8	P25648	1427 aa		0.86	□□□□□ -2.27
WHI3	YNL197C	HMRA1	P0CY11	126 aa		0.86	□□□□□ -2.27
WHI3	YNL197C	SPC1	P46965	94 aa		0.85	□□□□□ -2.27
WHI3	YNL197C	COX19	Q3E731	98 aa		0.85	□□□□□ -2.27
WHI3	YNL197C	NTE1	Q04958	1679 aa		0.85	□□□□□ -2.27
WHI3	YNL197C	YRF1-1	P0CX20	1796 aa		0.84	□□□□□ -2.27
WHI3	YNL197C	YRF1-5	P0CX21	1796 aa		0.84	□□□□□ -2.27
WHI3	YNL197C	YRF1-8	P0CX22	1796 aa		0.84	□□□□□ -2.27
WHI3	YNL197C	FAS2	P19097	1887 aa	Known RBP	0.84	□□□□□ -2.27
WHI3	YNL197C	MRP17	P28778	131 aa		0.84	□□□□□ -2.28
WHI3	YNL197C	EMC5	P40540	141 aa		0.84	□□□□□ -2.28
WHI3	YNL197C	ICY1	Q04329	127 aa		0.84	□□□□□ -2.28
WHI3	YNL197C	MRPL38	P35996	138 aa	Predicted RBP	0.83	□□□□□ -2.28
WHI3	YNL197C	NHP10	Q03435	203 aa		0.83	□□□□□ -2.28
WHI3	YNL197C	PAU20	Q08322	120 aa		0.83	□□□□□ -2.28
WHI3	YNL197C	SSN2	P38931	1420 aa		0.82	□□□□□ -2.28
WHI3	YNL197C	RSF2	P46974	1380 aa		0.82	□□□□□ -2.28
WHI3	YNL197C	RPS11A	P0CX47	156 aa	Known RBP	0.82	□□□□□ -2.28
WHI3	YNL197C	RPS11B	P0CX48	156 aa	Known RBP	0.82	□□□□□ -2.28
WHI3	YNL197C	PDR10	P51533	1564 aa		0.82	□□□□□ -2.28
WHI3	YNL197C	SKI3	P17883	1432 aa	Known RBP	0.81	□□□□□ -2.28
WHI3	YNL197C	RPA190	P10964	1664 aa	Known RBP	0.81	□□□□□ -2.28
WHI3	YNL197C	MSL1	P40567	111 aa	Predicted RBP	0.8	□□□□□ -2.28
WHI3	YNL197C	YCL001W-B	Q96VH2	84 aa		0.79	□□□□□ -2.28
WHI3	YNL197C	PAU1	P0CE88	120 aa		0.79	□□□□□ -2.28
WHI3	YNL197C	PAU14	P0CE89	120 aa		0.79	□□□□□ -2.28
WHI3	YNL197C	PAU8	P0CE92	120 aa		0.79	□□□□□ -2.28
WHI3	YNL197C	PAU11	P0CE93	120 aa		0.79	□□□□□ -2.28
WHI3	YNL197C	PAU13	P38725	120 aa		0.79	□□□□□ -2.28
WHI3	YNL197C	AIM19	P40502	157 aa		0.79	□□□□□ -2.28
WHI3	YNL197C	PAU10	Q03050	120 aa		0.79	□□□□□ -2.28
WHI3	YNL197C	PAU9	Q3E770	120 aa		0.79	□□□□□ -2.28

Retrieved 100 of 5,963 RNA–protein pairs in 158.2 ms