RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 C4BPAP04003 597 aaKnown RBP12.4□□□□□ -0.42
CLN3-257ENST00000637110 P4HA1P13674 534 aa12.4□□□□□ -0.42
CLN3-257ENST00000637110 BDNFP23560 247 aa12.4□□□□□ -0.42
CLN3-257ENST00000637110 PIK3CAP42336 1068 aa12.4□□□□□ -0.42
CLN3-257ENST00000637110 FZD5Q13467 585 aa12.4□□□□□ -0.42
CLN3-257ENST00000637110 FAM171BQ6P995 826 aa12.4□□□□□ -0.42
CLN3-257ENST00000637110 FAM186BQ8IYM0 893 aa12.4□□□□□ -0.42
CLN3-257ENST00000637110 KDF1Q8NAX2 398 aaPredicted RBP12.4□□□□□ -0.42
CLN3-257ENST00000637110 TTC16Q8NEE8 873 aa12.4□□□□□ -0.42
CLN3-257ENST00000637110 TMC2Q8TDI7 906 aa12.4□□□□□ -0.42
CLN3-257ENST00000637110 CSGALNACT1Q8TDX6 532 aa12.4□□□□□ -0.42
CLN3-257ENST00000637110 ERCC4Q92889 916 aaPredicted RBP12.4□□□□□ -0.42
CLN3-257ENST00000637110 ELMO3Q96BJ8 720 aa12.4□□□□□ -0.42
CLN3-257ENST00000637110 FUBP3Q96I24 572 aaKnown RBP eCLIP12.4□□□□□ -0.42
CLN3-257ENST00000637110 TSG101Q99816 390 aa12.4□□□□□ -0.42
CLN3-257ENST00000637110 SMG9Q9H0W8 520 aaKnown RBP12.4□□□□□ -0.42
CLN3-257ENST00000637110 CRTAC1Q9NQ79 661 aa12.4□□□□□ -0.42
CLN3-257ENST00000637110 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.4□□□□□ -0.42
CLN3-257ENST00000637110 UXTQ9UBK9 157 aaPredicted RBP12.4□□□□□ -0.42
CLN3-257ENST00000637110 NDRG2Q9UN36 371 aaKnown RBP12.4□□□□□ -0.42
CLN3-257ENST00000637110 CETN3O15182 167 aa12.39□□□□□ -0.43
CLN3-257ENST00000637110 TACC1O75410 805 aa12.39□□□□□ -0.43
CLN3-257ENST00000637110 AKAP3O75969 853 aa12.39□□□□□ -0.43
CLN3-257ENST00000637110 FAM163BP0C2L3 166 aa12.39□□□□□ -0.43
CLN3-257ENST00000637110 TRIM49P0CI25 452 aa12.39□□□□□ -0.43
CLN3-257ENST00000637110 TRIM49CP0CI26 452 aa12.39□□□□□ -0.43
CLN3-257ENST00000637110 PTPN1P18031 435 aaKnown RBP12.39□□□□□ -0.43
CLN3-257ENST00000637110 PSMC2P35998 433 aaKnown RBP12.39□□□□□ -0.43
CLN3-257ENST00000637110 AVPR1AP37288 418 aa12.39□□□□□ -0.43
CLN3-257ENST00000637110 RAP1GAPP47736 663 aa12.39□□□□□ -0.43
CLN3-257ENST00000637110 CXCL12P48061 93 aa12.39□□□□□ -0.43
CLN3-257ENST00000637110 NLRP12P59046 1061 aa12.39□□□□□ -0.43
CLN3-257ENST00000637110 SGSM1Q2NKQ1 1148 aa12.39□□□□□ -0.43
CLN3-257ENST00000637110 CFAP221Q4G0U5 840 aa12.39□□□□□ -0.43
CLN3-257ENST00000637110 ZNF658Q5TYW1 1059 aaPredicted RBP12.39□□□□□ -0.43
CLN3-257ENST00000637110 ISM2Q6H9L7 571 aa12.39□□□□□ -0.43
CLN3-257ENST00000637110 INTS8Q75QN2 995 aaKnown RBP12.39□□□□□ -0.43
CLN3-257ENST00000637110 SV2AQ7L0J3 742 aa12.39□□□□□ -0.43
CLN3-257ENST00000637110 MFSD6LQ8IWD5 586 aa12.39□□□□□ -0.43
CLN3-257ENST00000637110 MAB21L3Q8N8X9 362 aa12.39□□□□□ -0.43
CLN3-257ENST00000637110 CCDC150Q8NCX0 1101 aa12.39□□□□□ -0.43
CLN3-257ENST00000637110 MYCBPAPQ8TBZ2 947 aa12.39□□□□□ -0.43
CLN3-257ENST00000637110 GSDMAQ96QA5 445 aa12.39□□□□□ -0.43
CLN3-257ENST00000637110 PKMYT1Q99640 499 aa12.39□□□□□ -0.43
CLN3-257ENST00000637110 MED10Q9BTT4 135 aa12.39□□□□□ -0.43
CLN3-257ENST00000637110 IMPG2Q9BZV3 1241 aa12.39□□□□□ -0.43
CLN3-257ENST00000637110 GZF1Q9H116 711 aaPredicted RBP12.39□□□□□ -0.43
CLN3-257ENST00000637110 SMYD3Q9H7B4 428 aa12.39□□□□□ -0.43
CLN3-257ENST00000637110 TRPV4Q9HBA0 871 aa12.39□□□□□ -0.43
CLN3-257ENST00000637110 IL21Q9HBE4 155 aa12.39□□□□□ -0.43
CLN3-257ENST00000637110 TRPC7Q9HCX4 862 aa12.39□□□□□ -0.43
CLN3-257ENST00000637110 THG1LQ9NWX6 298 aaKnown RBP12.39□□□□□ -0.43
CLN3-257ENST00000637110 PCDHA5Q9Y5H7 936 aa12.39□□□□□ -0.43
CLN3-257ENST00000637110 ZZEF1O43149 2961 aa12.38□□□□□ -0.43
CLN3-257ENST00000637110 C1QTNF9BB2RNN3 333 aa12.38□□□□□ -0.43
CLN3-257ENST00000637110 TM4SF5O14894 197 aa12.38□□□□□ -0.43
CLN3-257ENST00000637110 IKBKBO14920 756 aa12.38□□□□□ -0.43
CLN3-257ENST00000637110 STAU1O95793 577 aaKnown RBP12.38□□□□□ -0.43
CLN3-257ENST00000637110 F11P03951 625 aa12.38□□□□□ -0.43
CLN3-257ENST00000637110 C1QTNF9P0C862 333 aa12.38□□□□□ -0.43
CLN3-257ENST00000637110 HMGA1P17096 107 aaKnown RBP12.38□□□□□ -0.43
CLN3-257ENST00000637110 TRIM21P19474 475 aaKnown RBP12.38□□□□□ -0.43
CLN3-257ENST00000637110 PRCPP42785 496 aa12.38□□□□□ -0.43
CLN3-257ENST00000637110 MAGEA11P43364 429 aa12.38□□□□□ -0.43
CLN3-257ENST00000637110 GCLMP48507 274 aa12.38□□□□□ -0.43
CLN3-257ENST00000637110 KPNA1P52294 538 aaPredicted RBP12.38□□□□□ -0.43
CLN3-257ENST00000637110 CDH8P55286 799 aa12.38□□□□□ -0.43
CLN3-257ENST00000637110 CLDN10P78369 228 aa12.38□□□□□ -0.43
CLN3-257ENST00000637110 IFRD2Q12894 506 aaPredicted RBP12.38□□□□□ -0.43
CLN3-257ENST00000637110 STIM1Q13586 685 aa12.38□□□□□ -0.43
CLN3-257ENST00000637110 NFIL3Q16649 462 aa12.38□□□□□ -0.43
CLN3-257ENST00000637110 ZACNQ401N2 412 aa12.38□□□□□ -0.43
CLN3-257ENST00000637110 TXNDC8Q6A555 127 aa12.38□□□□□ -0.43
CLN3-257ENST00000637110 VSTM1Q6UX27 236 aa12.38□□□□□ -0.43
CLN3-257ENST00000637110 CEP68Q76N32 757 aa12.38□□□□□ -0.43
CLN3-257ENST00000637110 LIMS2Q7Z4I7 341 aa12.38□□□□□ -0.43
CLN3-257ENST00000637110 LONP2Q86WA8 852 aa12.38□□□□□ -0.43
CLN3-257ENST00000637110 ENGASEQ8NFI3 743 aa12.38□□□□□ -0.43
CLN3-257ENST00000637110 TTC8Q8TAM2 541 aa12.38□□□□□ -0.43
CLN3-257ENST00000637110 BPIFB1Q8TDL5 484 aa12.38□□□□□ -0.43
CLN3-257ENST00000637110 TMEM174Q8WUU8 243 aa12.38□□□□□ -0.43
CLN3-257ENST00000637110 RSPRY1Q96DX4 576 aa12.38□□□□□ -0.43
CLN3-257ENST00000637110 EEF2KMTQ96G04 330 aa12.38□□□□□ -0.43
CLN3-257ENST00000637110 PCED1BQ96HM7 432 aa12.38□□□□□ -0.43
CLN3-257ENST00000637110 TIGD1Q96MW7 591 aa12.38□□□□□ -0.43
CLN3-257ENST00000637110 SLC46A2Q9BY10 475 aa12.38□□□□□ -0.43
CLN3-257ENST00000637110 XYLT2Q9H1B5 865 aa12.38□□□□□ -0.43
CLN3-257ENST00000637110 DPEP3Q9H4B8 488 aa12.38□□□□□ -0.43
CLN3-257ENST00000637110 CIZ1Q9ULV3 898 aaPredicted RBP12.38□□□□□ -0.43
CLN3-257ENST00000637110 SPAG17Q6Q759 2223 aa12.38□□□□□ -0.43
CLN3-257ENST00000637110 ATP8B3O60423 1300 aa12.37□□□□□ -0.43
CLN3-257ENST00000637110 IGF2RP11717 2491 aa12.37□□□□□ -0.43
CLN3-257ENST00000637110 SPEGQ15772 3267 aa12.37□□□□□ -0.43
CLN3-257ENST00000637110 TRIM66O15016 1216 aa12.37□□□□□ -0.43
CLN3-257ENST00000637110 MAPK13O15264 365 aa12.37□□□□□ -0.43
CLN3-257ENST00000637110 HRO43593 1189 aa12.37□□□□□ -0.43
CLN3-257ENST00000637110 NOL4O94818 638 aa12.37□□□□□ -0.43
CLN3-257ENST00000637110 KCNK5O95279 499 aa12.37□□□□□ -0.43
CLN3-257ENST00000637110 VNN1O95497 513 aa12.37□□□□□ -0.43
CLN3-257ENST00000637110 ABL1P00519 1130 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms