RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 TEAD2Q15562 447 aa19.26■□□□□ 0.67
CLN3-243ENST00000635973 TAF12Q16514 161 aa19.26■□□□□ 0.67
CLN3-243ENST00000635973 EXOC3L4Q17RC7 722 aa19.26■□□□□ 0.67
CLN3-243ENST00000635973 CCDC142Q17RM4 750 aa19.26■□□□□ 0.67
CLN3-243ENST00000635973 ITIH5Q86UX2 942 aa19.26■□□□□ 0.67
CLN3-243ENST00000635973 UNC93AQ86WB7 457 aa19.26■□□□□ 0.67
CLN3-243ENST00000635973 YAF2Q8IY57 180 aa19.26■□□□□ 0.67
CLN3-243ENST00000635973 TTC9BQ8N6N2 239 aa19.26■□□□□ 0.67
CLN3-243ENST00000635973 EHBP1Q8NDI1 1231 aa19.26■□□□□ 0.67
CLN3-243ENST00000635973 ZSCAN18Q8TBC5 510 aaPredicted RBP19.26■□□□□ 0.67
CLN3-243ENST00000635973 ARID3AQ99856 593 aa19.26■□□□□ 0.67
CLN3-243ENST00000635973 DDX23Q9BUQ8 820 aaKnown RBP19.26■□□□□ 0.67
CLN3-243ENST00000635973 CRISPLD1Q9H336 500 aa19.26■□□□□ 0.67
CLN3-243ENST00000635973 LTB4R2Q9NPC1 389 aa19.26■□□□□ 0.67
CLN3-243ENST00000635973 HEBP1Q9NRV9 189 aa19.26■□□□□ 0.67
CLN3-243ENST00000635973 DLGAP2Q9P1A6 1054 aa19.26■□□□□ 0.67
CLN3-243ENST00000635973 HMGXB4Q9UGU5 601 aa19.26■□□□□ 0.67
CLN3-243ENST00000635973 ASB3Q9Y575 518 aa19.26■□□□□ 0.67
CLN3-243ENST00000635973 NME7Q9Y5B8 376 aa19.26■□□□□ 0.67
CLN3-243ENST00000635973 CFAP54Q96N23 3096 aa19.25■□□□□ 0.67
CLN3-243ENST00000635973 A0A1W2PRU2 124 aa19.25■□□□□ 0.67
CLN3-243ENST00000635973 LAMTOR5O43504 91 aa19.25■□□□□ 0.67
CLN3-243ENST00000635973 SOAT2O75908 522 aa19.25■□□□□ 0.67
CLN3-243ENST00000635973 FGF19O95750 216 aa19.25■□□□□ 0.67
CLN3-243ENST00000635973 GDI1P31150 447 aa19.25■□□□□ 0.67
CLN3-243ENST00000635973 MAGEA9P43362 315 aa19.25■□□□□ 0.67
CLN3-243ENST00000635973 TUFMP49411 452 aaKnown RBP19.25■□□□□ 0.67
CLN3-243ENST00000635973 TPM4P67936 248 aa19.25■□□□□ 0.67
CLN3-243ENST00000635973 INCA1Q0VD86 236 aa19.25■□□□□ 0.67
CLN3-243ENST00000635973 VEPH1Q14D04 833 aa19.25■□□□□ 0.67
CLN3-243ENST00000635973 NCAPHQ15003 741 aa19.25■□□□□ 0.67
CLN3-243ENST00000635973 KRT31Q15323 416 aa19.25■□□□□ 0.67
CLN3-243ENST00000635973 FAM171BQ6P995 826 aa19.25■□□□□ 0.67
CLN3-243ENST00000635973 ACOT1Q86TX2 421 aa19.25■□□□□ 0.67
CLN3-243ENST00000635973 DHX40Q8IX18 779 aaKnown RBP19.25■□□□□ 0.67
CLN3-243ENST00000635973 MYCBPAPQ8TBZ2 947 aa19.25■□□□□ 0.67
CLN3-243ENST00000635973 DEPDC1BQ8WUY9 529 aa19.25■□□□□ 0.67
CLN3-243ENST00000635973 E2F7Q96AV8 911 aa19.25■□□□□ 0.67
CLN3-243ENST00000635973 ZSWIM3Q96MP5 696 aa19.25■□□□□ 0.67
CLN3-243ENST00000635973 PKMYT1Q99640 499 aa19.25■□□□□ 0.67
CLN3-243ENST00000635973 MED10Q9BTT4 135 aa19.25■□□□□ 0.67
CLN3-243ENST00000635973 NT5C1AQ9BXI3 368 aa19.25■□□□□ 0.67
CLN3-243ENST00000635973 ABCB6Q9NP58 842 aa19.25■□□□□ 0.67
CLN3-243ENST00000635973 CISHQ9NSE2 258 aa19.25■□□□□ 0.67
CLN3-243ENST00000635973 HSFX1Q9UBD0 423 aa19.25■□□□□ 0.67
CLN3-243ENST00000635973 TICRRQ7Z2Z1 1910 aa19.25■□□□□ 0.67
CLN3-243ENST00000635973 ATP8B3O60423 1300 aa19.25■□□□□ 0.67
CLN3-243ENST00000635973 GTPBP10A4D1E9 387 aaKnown RBP19.24■□□□□ 0.67
CLN3-243ENST00000635973 MAN2B1O00754 1011 aa19.24■□□□□ 0.67
CLN3-243ENST00000635973 ZNF263O14978 683 aa19.24■□□□□ 0.67
CLN3-243ENST00000635973 CAVIN2O95810 425 aa19.24■□□□□ 0.67
CLN3-243ENST00000635973 SP9P0CG40 484 aa19.24■□□□□ 0.67
CLN3-243ENST00000635973 GLULP15104 373 aa19.24■□□□□ 0.67
CLN3-243ENST00000635973 FCARP24071 287 aa19.24■□□□□ 0.67
CLN3-243ENST00000635973 ARHGAP15Q53QZ3 475 aa19.24■□□□□ 0.67
CLN3-243ENST00000635973 MIIPQ5JXC2 388 aa19.24■□□□□ 0.67
CLN3-243ENST00000635973 FKBP15Q5T1M5 1219 aa19.24■□□□□ 0.67
CLN3-243ENST00000635973 SHKBP1Q8TBC3 707 aa19.24■□□□□ 0.67
CLN3-243ENST00000635973 PCED1BQ96HM7 432 aa19.24■□□□□ 0.67
CLN3-243ENST00000635973 FUBP3Q96I24 572 aaKnown RBP eCLIP19.24■□□□□ 0.67
CLN3-243ENST00000635973 GCNAQ96QF7 691 aa19.24■□□□□ 0.67
CLN3-243ENST00000635973 VPS16Q9H269 839 aa19.24■□□□□ 0.67
CLN3-243ENST00000635973 MTF2Q9Y483 593 aaPredicted RBP19.24■□□□□ 0.67
CLN3-243ENST00000635973 R4GN57 208 aa19.24■□□□□ 0.67
CLN3-243ENST00000635973 COL4A3Q01955 1670 aa19.24■□□□□ 0.67
CLN3-243ENST00000635973 DPYSL4O14531 572 aa19.23■□□□□ 0.67
CLN3-243ENST00000635973 CILPO75339 1184 aa19.23■□□□□ 0.67
CLN3-243ENST00000635973 MOSPD3O75425 235 aa19.23■□□□□ 0.67
CLN3-243ENST00000635973 LMNAP02545 664 aaKnown RBP19.23■□□□□ 0.67
CLN3-243ENST00000635973 HAPLN1P10915 354 aaPredicted RBP19.23■□□□□ 0.67
CLN3-243ENST00000635973 CYP2F1P24903 491 aa19.23■□□□□ 0.67
CLN3-243ENST00000635973 VIPR2P41587 438 aa19.23■□□□□ 0.67
CLN3-243ENST00000635973 CFAP221Q4G0U5 840 aa19.23■□□□□ 0.67
CLN3-243ENST00000635973 ZNF394Q53GI3 561 aa19.23■□□□□ 0.67
CLN3-243ENST00000635973 TRIM65Q6PJ69 517 aa19.23■□□□□ 0.67
CLN3-243ENST00000635973 POTEHQ6S545 545 aa19.23■□□□□ 0.67
CLN3-243ENST00000635973 VITQ6UXI7 678 aa19.23■□□□□ 0.67
CLN3-243ENST00000635973 RRAGAQ7L523 313 aa19.23■□□□□ 0.67
CLN3-243ENST00000635973 DNAJB7Q7Z6W7 309 aaPredicted RBP19.23■□□□□ 0.67
CLN3-243ENST00000635973 SCN4BQ8IWT1 228 aa19.23■□□□□ 0.67
CLN3-243ENST00000635973 LMO3Q8TAP4 145 aa19.23■□□□□ 0.67
CLN3-243ENST00000635973 CSGALNACT1Q8TDX6 532 aa19.23■□□□□ 0.67
CLN3-243ENST00000635973 LPIN3Q9BQK8 851 aa19.23■□□□□ 0.67
CLN3-243ENST00000635973 ATXN3LQ9H3M9 355 aa19.23■□□□□ 0.67
CLN3-243ENST00000635973 FAM124BQ9H5Z6 455 aaPredicted RBP19.23■□□□□ 0.67
CLN3-243ENST00000635973 CBX8Q9HC52 389 aa19.23■□□□□ 0.67
CLN3-243ENST00000635973 PATJQ8NI35 1801 aa19.23■□□□□ 0.67
CLN3-243ENST00000635973 GOLGA6L19H0YKK7 550 aa19.22■□□□□ 0.67
CLN3-243ENST00000635973 ZNF18P17022 549 aa19.22■□□□□ 0.67
CLN3-243ENST00000635973 BDNFP23560 247 aa19.22■□□□□ 0.67
CLN3-243ENST00000635973 COPB1P53618 953 aaKnown RBP19.22■□□□□ 0.67
CLN3-243ENST00000635973 RPL10AP62906 217 aaKnown RBP19.22■□□□□ 0.67
CLN3-243ENST00000635973 GCNT1Q02742 428 aa19.22■□□□□ 0.67
CLN3-243ENST00000635973 ARHGEF19Q8IW93 802 aa19.22■□□□□ 0.67
CLN3-243ENST00000635973 MFSD6LQ8IWD5 586 aa19.22■□□□□ 0.67
CLN3-243ENST00000635973 PSMG2Q969U7 264 aa19.22■□□□□ 0.67
CLN3-243ENST00000635973 TWNKQ96RR1 684 aa19.22■□□□□ 0.67
CLN3-243ENST00000635973 HINFPQ9BQA5 517 aa19.22■□□□□ 0.67
CLN3-243ENST00000635973 ELOVL4Q9GZR5 314 aa19.22■□□□□ 0.67
CLN3-243ENST00000635973 TSPY26PQ9H489 355 aa19.22■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms