RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 CYP3A43Q9HB55 503 aa13.37□□□□□ -0.27
LINC00540-203ENST00000631321 NOP53Q9NZM5 478 aaKnown RBP13.37□□□□□ -0.27
LINC00540-203ENST00000631321 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.37□□□□□ -0.27
LINC00540-203ENST00000631321 BRCA1P38398 1863 aaKnown RBP13.36□□□□□ -0.27
LINC00540-203ENST00000631321 LRRC37A2A6NM11 1700 aa13.36□□□□□ -0.27
LINC00540-203ENST00000631321 A8MUI8 341 aa13.36□□□□□ -0.27
LINC00540-203ENST00000631321 MCF2LO15068 1137 aa13.36□□□□□ -0.27
LINC00540-203ENST00000631321 MICAL2O94851 1124 aa13.36□□□□□ -0.27
LINC00540-203ENST00000631321 ANP32DO95626 131 aa13.36□□□□□ -0.27
LINC00540-203ENST00000631321 CXCL8P10145 99 aa13.36□□□□□ -0.27
LINC00540-203ENST00000631321 ATICP31939 592 aa13.36□□□□□ -0.27
LINC00540-203ENST00000631321 SLC26A2P50443 739 aa13.36□□□□□ -0.27
LINC00540-203ENST00000631321 CDH8P55286 799 aa13.36□□□□□ -0.27
LINC00540-203ENST00000631321 DPYSL3Q14195 570 aa13.36□□□□□ -0.27
LINC00540-203ENST00000631321 HSDL1Q3SXM5 330 aa13.36□□□□□ -0.27
LINC00540-203ENST00000631321 SLC45A4Q5BKX6 768 aa13.36□□□□□ -0.27
LINC00540-203ENST00000631321 NCAPG2Q86XI2 1143 aa13.36□□□□□ -0.27
LINC00540-203ENST00000631321 VSIG1Q86XK7 387 aa13.36□□□□□ -0.27
LINC00540-203ENST00000631321 VPS11Q9H270 941 aa13.36□□□□□ -0.27
LINC00540-203ENST00000631321 ASNSD1Q9NWL6 643 aa13.36□□□□□ -0.27
LINC00540-203ENST00000631321 XPO7Q9UIA9 1087 aaKnown RBP13.36□□□□□ -0.27
LINC00540-203ENST00000631321 USP18Q9UMW8 372 aa13.36□□□□□ -0.27
LINC00540-203ENST00000631321 C15orf41Q9Y2V0 281 aa13.36□□□□□ -0.27
LINC00540-203ENST00000631321 L3MBTL1Q9Y468 752 aa13.36□□□□□ -0.27
LINC00540-203ENST00000631321 C2CD2LO14523 706 aa13.35□□□□□ -0.27
LINC00540-203ENST00000631321 TRAFD1O14545 582 aaPredicted RBP13.35□□□□□ -0.27
LINC00540-203ENST00000631321 HMGCRP04035 888 aa13.35□□□□□ -0.27
LINC00540-203ENST00000631321 NFICP08651 508 aa13.35□□□□□ -0.27
LINC00540-203ENST00000631321 T-ENOLP0DO92 83 aa13.35□□□□□ -0.27
LINC00540-203ENST00000631321 STIP1P31948 543 aaKnown RBP13.35□□□□□ -0.27
LINC00540-203ENST00000631321 GBP2P32456 591 aaPredicted RBP13.35□□□□□ -0.27
LINC00540-203ENST00000631321 GPD2P43304 727 aa13.35□□□□□ -0.27
LINC00540-203ENST00000631321 ZNF143P52747 638 aaPredicted RBP13.35□□□□□ -0.27
LINC00540-203ENST00000631321 HIRAP54198 1017 aaPredicted RBP13.35□□□□□ -0.27
LINC00540-203ENST00000631321 VGLL4Q14135 290 aa13.35□□□□□ -0.27
LINC00540-203ENST00000631321 NOMO1Q15155 1222 aa13.35□□□□□ -0.27
LINC00540-203ENST00000631321 TMEM192Q8IY95 271 aa13.35□□□□□ -0.27
LINC00540-203ENST00000631321 PLCD3Q8N3E9 789 aa13.35□□□□□ -0.27
LINC00540-203ENST00000631321 FAM71DQ8N9W8 422 aa13.35□□□□□ -0.27
LINC00540-203ENST00000631321 MRRFQ96E11 262 aaKnown RBP13.35□□□□□ -0.27
LINC00540-203ENST00000631321 TMEM176AQ96HP8 235 aa13.35□□□□□ -0.27
LINC00540-203ENST00000631321 FGD4Q96M96 766 aa13.35□□□□□ -0.27
LINC00540-203ENST00000631321 SMYD3Q9H7B4 428 aa13.35□□□□□ -0.27
LINC00540-203ENST00000631321 SYNCQ9H7C4 482 aa13.35□□□□□ -0.27
LINC00540-203ENST00000631321 HMGXB4Q9UGU5 601 aa13.35□□□□□ -0.27
LINC00540-203ENST00000631321 PCSK1NQ9UHG2 260 aa13.35□□□□□ -0.27
LINC00540-203ENST00000631321 STK38LQ9Y2H1 464 aa13.35□□□□□ -0.27
LINC00540-203ENST00000631321 INO80B-WBP1J3KQ70 363 aa13.35□□□□□ -0.27
LINC00540-203ENST00000631321 RNF8O76064 485 aa13.35□□□□□ -0.27
LINC00540-203ENST00000631321 KRT19P08727 400 aa13.35□□□□□ -0.27
LINC00540-203ENST00000631321 RBP3P10745 1247 aa13.35□□□□□ -0.27
LINC00540-203ENST00000631321 ADRA1DP25100 572 aa13.35□□□□□ -0.27
LINC00540-203ENST00000631321 OSTNP61366 133 aa13.35□□□□□ -0.27
LINC00540-203ENST00000631321 ATP11AP98196 1134 aa13.35□□□□□ -0.27
LINC00540-203ENST00000631321 TAF5Q15542 800 aa13.35□□□□□ -0.27
LINC00540-203ENST00000631321 FAM187BQ17R55 369 aa13.35□□□□□ -0.27
LINC00540-203ENST00000631321 BBS9Q3SYG4 887 aa13.35□□□□□ -0.27
LINC00540-203ENST00000631321 CYP4V2Q6ZWL3 525 aaPredicted RBP13.35□□□□□ -0.27
LINC00540-203ENST00000631321 EEPD1Q7L9B9 569 aa13.35□□□□□ -0.27
LINC00540-203ENST00000631321 PALM2Q8IXS6 379 aa13.35□□□□□ -0.27
LINC00540-203ENST00000631321 NLRP4Q96MN2 994 aa13.35□□□□□ -0.27
LINC00540-203ENST00000631321 CYTH2Q99418 400 aa13.35□□□□□ -0.27
LINC00540-203ENST00000631321 INO80BQ9C086 356 aaPredicted RBP13.35□□□□□ -0.27
LINC00540-203ENST00000631321 MINDY3Q9H8M7 445 aa13.35□□□□□ -0.27
LINC00540-203ENST00000631321 LACTBL1A8MY62 500 aa13.34□□□□□ -0.27
LINC00540-203ENST00000631321 GPR25O00155 361 aa13.34□□□□□ -0.27
LINC00540-203ENST00000631321 NOP56O00567 594 aaKnown RBP13.34□□□□□ -0.27
LINC00540-203ENST00000631321 HGSO14964 777 aaPredicted RBP13.34□□□□□ -0.27
LINC00540-203ENST00000631321 CNMDO75829 334 aa13.34□□□□□ -0.27
LINC00540-203ENST00000631321 DHRS4L1P0CG22 281 aa13.34□□□□□ -0.27
LINC00540-203ENST00000631321 VDRP11473 427 aa13.34□□□□□ -0.27
LINC00540-203ENST00000631321 ATP2A2P16615 1042 aaKnown RBP13.34□□□□□ -0.27
LINC00540-203ENST00000631321 CCNG1P51959 295 aa13.34□□□□□ -0.27
LINC00540-203ENST00000631321 IRX3P78415 501 aaPredicted RBP13.34□□□□□ -0.27
LINC00540-203ENST00000631321 ROR1Q01973 937 aa13.34□□□□□ -0.27
LINC00540-203ENST00000631321 POU5F1BQ06416 359 aa13.34□□□□□ -0.27
LINC00540-203ENST00000631321 KCNJ11Q14654 390 aa13.34□□□□□ -0.27
LINC00540-203ENST00000631321 WDR78Q5VTH9 848 aa13.34□□□□□ -0.27
LINC00540-203ENST00000631321 SPATA18Q8TC71 538 aa13.34□□□□□ -0.27
LINC00540-203ENST00000631321 N4BP2L2Q92802 583 aaPredicted RBP13.34□□□□□ -0.27
LINC00540-203ENST00000631321 SLC7A6OSQ96CW6 309 aaPredicted RBP13.34□□□□□ -0.27
LINC00540-203ENST00000631321 THOC1Q96FV9 657 aaKnown RBP13.34□□□□□ -0.27
LINC00540-203ENST00000631321 PEBP4Q96S96 227 aa13.34□□□□□ -0.27
LINC00540-203ENST00000631321 MPHOSPH6Q99547 160 aaKnown RBP13.34□□□□□ -0.27
LINC00540-203ENST00000631321 CNPY3Q9BT09 278 aa13.34□□□□□ -0.27
LINC00540-203ENST00000631321 FAM124BQ9H5Z6 455 aaPredicted RBP13.34□□□□□ -0.27
LINC00540-203ENST00000631321 GPRC5DQ9NZD1 345 aa13.34□□□□□ -0.27
LINC00540-203ENST00000631321 IRF6O14896 467 aa13.34□□□□□ -0.27
LINC00540-203ENST00000631321 HBP1O60381 514 aa13.34□□□□□ -0.27
LINC00540-203ENST00000631321 SPAG6O75602 509 aa13.34□□□□□ -0.27
LINC00540-203ENST00000631321 FAM155BO75949 473 aa13.34□□□□□ -0.27
LINC00540-203ENST00000631321 GJB1P08034 283 aa13.34□□□□□ -0.27
LINC00540-203ENST00000631321 MCF2P10911 925 aa13.34□□□□□ -0.27
LINC00540-203ENST00000631321 BAG6P46379 1132 aa13.34□□□□□ -0.27
LINC00540-203ENST00000631321 SLC18A2Q05940 514 aa13.34□□□□□ -0.27
LINC00540-203ENST00000631321 FAM47CQ5HY64 1035 aa13.34□□□□□ -0.27
LINC00540-203ENST00000631321 FYB2Q5VWT5 728 aa13.34□□□□□ -0.27
LINC00540-203ENST00000631321 CCDC62Q6P9F0 684 aa13.34□□□□□ -0.27
LINC00540-203ENST00000631321 SH2D5Q6ZV89 423 aa13.34□□□□□ -0.27
LINC00540-203ENST00000631321 CHSY1Q86X52 802 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms